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- * Raymond * Raymond in charge of documentation now733 bytes (88 words) - 18:32, 29 May 2013
- | Anatomy_function||Raymond | Anatomy_name||Raymond1 KB (200 words) - 17:59, 6 October 2017
- JD, Raymond * Setting up Raymond's WormMine instance1 KB (183 words) - 19:25, 9 May 2013
- === Action items for Raymond === === Raymond ===1 KB (169 words) - 16:51, 28 May 2013
- ! raymond #Documentation (Raymond)1 KB (147 words) - 14:23, 30 May 2013
- JD, Raymond ** Assigned to Raymond2 KB (241 words) - 15:32, 15 May 2013
- 8pm - 9:30pm: Tamberlyn Bieri (with laptop), Philip Ozersky (with Laptop), Raymond 9:30pm - 11pm: Raymond (Laptop), Wen Chen (with laptop),608 bytes (92 words) - 17:29, 20 June 2011
- 8pm - 9:30pm: Tamberlyn Bieri (with laptop), Philip Ozersky (with Laptop), Raymond 9:30pm - 11pm: Raymond (Laptop), Wen Chen (with laptop),608 bytes (92 words) - 01:09, 30 June 2015
- ** Raymond - Not about automated predictions, about manual connections of functional h * Raymond - Caltech scrambling for model changes recently. There was discussion on g2 KB (277 words) - 16:10, 17 November 2017
- ''Access code has also changed, see email from Raymond to staff@wormbase for this code'' Raymond: hopefully we won’t need SimpleMine when WormMine is fully featured.<br /1 KB (243 words) - 16:03, 4 August 2016
- *Raymond mentioned UI tweaks and branding *Raymond tasked with wiki for sample queries and how to create templates.2 KB (295 words) - 16:39, 16 May 2013
- == Website Search Function (Raymond)==2 KB (263 words) - 22:55, 16 May 2017
- * update ontology/anatom script on live -- Raymond's request for database_url1,008 bytes (140 words) - 17:20, 3 February 2010
- ! raymond1 KB (154 words) - 14:18, 20 June 2013
- * Raymond's proposal: each of three WB sites contributes a portion of the paper, each * Raymond: each site knows the new features and issues to bring up; could try as an e2 KB (378 words) - 16:32, 3 August 2017
- Raymond: built gene-mapping tool using python Jupyter notebook and google colab. Th Raymond: might not be as good, as they might not be able to adjust things for thems3 KB (494 words) - 16:08, 4 June 2020
- Raymond brings up difficulty in using coordinates to search and retrieve sequence w Raymond sees that WormMine has the capability, but returns a more detailed return b1 KB (209 words) - 15:52, 20 July 2023
- Brief_id ?Text //put in for Raymond and Paul, equivalent to old Remark but shorter ...xt // the whole of old remark plus more to be added by Raymond2 KB (215 words) - 11:09, 10 August 2010
- ==== Raymond: ====2 KB (260 words) - 11:11, 27 July 2012
- * Raymond will spend time on AmiGO and see how can be beneficial to us. Raymond does not have yet the complete code.1 KB (182 words) - 10:02, 2 November 2012
- * Raymond: would be interested in discussing ontologies and their usage in the Allian * Wen and Raymond now have access to outreach@wormbase.org account; will upload videos3 KB (427 words) - 15:32, 1 August 2019
- * Caltech (Raymond, Juancarlos, Chris) worked on new phenotype summary view * Raymond will work with Daniela to get anatomy-associated images displayed on the we2 KB (379 words) - 16:39, 1 October 2015
- ...ki> and select the desired configuration (e.g.: worm.cfg) (Now we're using Raymond's repository instead of the main phenote one : <nowiki>svn co https://obo.s4 KB (613 words) - 03:02, 19 December 2008
- * Raymond wanted to know when this would go live because he has already updated the O * Raymond asked if anyone had objections to a simple gene data mining tool.2 KB (324 words) - 17:41, 2 June 2016
- Anatomy_term ?Anatomy_term //[2006-04-21 ar2] Raymond413 bytes (38 words) - 08:57, 5 October 2010
- // AO_code class - Raymond Lee 040203515 bytes (46 words) - 11:02, 10 August 2010
- * Engaging Raymond more ** Raymond can do this?2 KB (252 words) - 15:53, 10 May 2013
- // ?Anatomy_name - Raymond, krb [030916]769 bytes (70 words) - 10:43, 10 August 2010
- // NEW Expr_profile and SK_map classes added at request of Raymond [010912 krb]595 bytes (73 words) - 10:27, 4 October 2010
- ...b-future group : Todd Harris (TH), Abigail Cabunoc (AC), Adam Wright (AW), Raymond Lee (RL), Juancarlos Chan (JC), Kevin Howe (KH), Michael Paulini (MP), Paul526 bytes (87 words) - 16:01, 18 March 2014
- .../WormBase/website/issues/9282 New external links for connectome display] - Raymond, can you confirm all is working as expected? Yes. They are working now. ...res, Dio, Jae, Juancarlos, Karen, Kimberly, Mark, Michael, Paolo, Ranjana, Raymond, Scott, Stavros, Steph, Todd, Valerio2 KB (283 words) - 15:52, 3 August 2023
- * broken treeview (Raymond): ** would be useful for an ontology browser (Raymond)2 KB (339 words) - 16:20, 20 April 2017
- Daniela: Raymond suggested to obtain standard strain names for Transgenome project. Paul Dav * Raymond: Biologically do they generate knockdown effect?4 KB (645 words) - 23:43, 3 October 2019
- ...ret Duesbury, Ruihua Fang, Jolene Fernandes, Michael Han, Ranjana Kishore, Raymond Lee, Hans-Michael Müller, Cecilia Nakamura, Philip Ozersky, Andrei Petcher ...J. Fiedler, Michael Han, [[User:Tharris|Todd W. Harris]], Ranjana Kishore, Raymond Lee, Sheldon McKay, Hans-Michael Müller, Cecilia Nakamura, Philip Ozersky,6 KB (781 words) - 02:18, 1 April 2012
- *Raymond and Juancarlos have taken AMIGO2 infrastructure to make an ontology browser *Raymond has set up a server5 KB (850 words) - 15:32, 5 September 2013
- *** Raymond responded with a linked to Paul David's response in similar ticket #6735 *Raymond introduced Fernand to the team. He is focusing on anatomy function curation2 KB (315 words) - 21:06, 3 July 2020
- Wen: metadata is mostly mapping ontology terms and it should be in Raymond's domain of expertise but she will be be part of the WG. Raymond: finalize workshop presentation? Scott will send slides and/or a recording2 KB (414 words) - 16:14, 18 May 2023
- #*SObAs(raymond) ...enrichment (Tissue, Phenotype, GO) & SObA (Phenotype, GO, and Tissue(?)) (Raymond)3 KB (466 words) - 09:34, 3 March 2017
- // Anatomy_function class for Raymond1 KB (119 words) - 10:41, 10 August 2010
- *next officer Raymond Aug 6 ...on. Involves strain data that will be propagated to gene and allele pages. Raymond proposes that YouTube host the movies and we provide the links. Todd likes3 KB (560 words) - 16:24, 2 August 2012
- ==== Raymond: ====4 KB (503 words) - 08:30, 22 June 2012
- ...rating gene association files that conform to the GAF 2.0 format (Ranjana, Raymond)== ...which is the industry standard, and required for the ontology browser that Raymond and Juancarlos are working on.4 KB (629 words) - 16:57, 6 February 2014
- ! raymond2 KB (215 words) - 14:45, 11 June 2013
- * Raymond: possible lunch meeting849 bytes (126 words) - 16:46, 16 June 2017
- * Raymond - I would prefer one system used by everyone. * Raymond - we should encourage site-spcific projects on GitHub.4 KB (708 words) - 16:41, 16 July 2015
- Bottom_up_modelling // for Raymond in the future for cell upwards approach2 KB (159 words) - 11:11, 10 August 2010
- **Raymond - we do care where this data comes from ***Raymond will proof-read papers to check on corresponding author designation and ema3 KB (407 words) - 01:16, 19 February 2011
- Raymond is thinking about an easy to display solution. Maybe adding more info to th Raymond, Daniela, Eduardo and Wen are planning to start working on this in late Feb3 KB (462 words) - 17:47, 4 February 2021
- ....html Web Resources for ''C. elegans''] - WormBook's WormMethod chapter by Raymond Lee containing core web resources for ''C. elegans'' research1 KB (202 words) - 10:16, 11 June 2012
- * Raymond and Eduardo talked about taking it over * Raymond working on writing paper4 KB (605 words) - 15:21, 3 March 2020
- ! raymond2 KB (298 words) - 14:47, 18 June 2013
- Karen, Lincoln, Raymond Raymond, JD, Kevin, Todd, Paul S, Michael P4 KB (689 words) - 11:13, 29 August 2013
- * Raymond - Flybase has experience of moving to a new system. They may be able to adv * Raymond - we check the numbers in our classes.4 KB (645 words) - 08:57, 27 August 2014
- * Raymond: what about large publications like NAR papers? * Raymond: We could use use WBPerson or Analysis objects as appropriate.8 KB (1,246 words) - 15:52, 12 November 2013
- 3. SoBa Graph for NAR paper. Raymond will discuss with Sibyl on how to change the display.1 KB (165 words) - 18:42, 15 August 2019
- Raymond couldn't see a problem but deferred to Kimberly and Juancarlos to look into Raymond volunteered to prepare and circulate a template.3 KB (486 words) - 11:14, 21 December 2011
- *** Stavros and Raymond agreed to be representatives; may ask Todd as website representative1 KB (184 words) - 18:13, 16 February 2023
- * Raymond will write up a Wiki page for documentation * Raymond will pilot this with help docs for the new SObA phenotype graph5 KB (776 words) - 16:50, 7 January 2016
- * Raymond working on display for paper * Raymond, Juancarlos working on7 KB (1,010 words) - 17:08, 4 May 2017
- * Raymond, Valerio (community curation), Wen (Simple mine)787 bytes (115 words) - 04:11, 4 November 2021
- * Raymond : use Ranjana's document to organize talks, review topics, and other things * Todd could do the tools talk, otherwise Raymond could.7 KB (1,113 words) - 18:19, 6 April 2023
- * GitHub ticket 6775 - Raymond will respond * Raymond interested in this issue as well; Scott, Chris, and Raymond will discuss and come up with an automated approach4 KB (575 words) - 18:18, 6 December 2018
- * Raymond & Juancarlos will work on a SObA graph for GO annotations * Raymond and Juancarlos are working on it4 KB (544 words) - 16:22, 5 January 2017
- *Daniela [Karen/Raymond filling in as conference moderator] **Raymond suggests making a division between for-profit or non-profit, Paul S. sugges3 KB (420 words) - 16:02, 17 August 2017
- '''Raymond - is there a policy to deal with questions from students'''1 KB (181 words) - 15:47, 2 November 2017
- * Raymond will try to remember to forward to staff * Daniela, Wen, Valerio, Eduardo, Raymond met with CeNGEN5 KB (777 words) - 13:18, 1 April 2021
- **position_matrix (Raymond) **rearrangment (Raymond, Mary Ann?)7 KB (1,077 words) - 16:26, 20 July 2017
- Raymond: We have only stored the image and final analysis<br> Raymond: One postgres, two data streams one to acedb and a second to alliance<br>4 KB (709 words) - 13:27, 5 April 2021
- * Raymond: we should have a focus to the SAB meeting like collaborative efforts with * Raymond: we should have a focus to the SAB meeting like collaborative efforts with4 KB (684 words) - 19:43, 5 December 2015
- * Raymond: We should try to write so that the content remains pertinent for a while * Karen asked Raymond/Gary and any other person interested in the group to help with pharyngeal p7 KB (1,073 words) - 16:26, 2 March 2017
- Raymond has been working on a prototype. People should try it and give feedback.1 KB (203 words) - 16:53, 16 February 2017
- Raymond * Raymond & Chris - fixed gene interaction table dumping script4 KB (624 words) - 17:15, 4 April 2013
- Raymond - can you know if other people have read the message? Other possibility - LINE (Raymond) - could check to see if someone read it3 KB (477 words) - 16:23, 19 March 2015
- * Raymond encountering challenges with setting up regular meeting room reservations i * Anatomy function project with Raymond3 KB (542 words) - 16:49, 1 July 2021
- *Raymond and Juancarlos working on it *Raymond: Assume that once logged into another machine, your keystrokes could be mon5 KB (752 words) - 17:07, 7 July 2011
- **Raymond will send Paul Davis link to page that describes sequence verification1 KB (205 words) - 16:55, 17 May 2012
- ....html Web Resources for ''C. elegans''] - WormBook's WormMethod chapter by Raymond Lee containing core web resources for ''C. elegans'' research2 KB (284 words) - 22:43, 16 August 2010
- *Raymond setup FTP directory for Wen ***Raymond re-installed WS database4 KB (651 words) - 16:11, 2 May 2013
- * Raymond's LEGO-like approach to curating anatomy function * Raymond (WormBase ontology browser)6 KB (857 words) - 16:01, 2 October 2014
- In the future (thank you, Raymond): Contact Person: Raymond Lee5 KB (746 words) - 18:57, 10 August 2010
- ** Raymond, Chris, Ranjana, Valerio, Daniela, Kimberly * Raymond gets slim terms into Solr from OBO release file; Sibyl collecting from diff5 KB (759 words) - 15:02, 11 September 2019
- * Plans to add annotation searches for GO and AO, then bring in input from Raymond, Ranjana, Kimberly1 KB (150 words) - 16:37, 12 May 2010
- ...sentations/2005.11-SAB-CSHL/RL-2005-SAB-AO.ppt Cells and anatomy ontology, Raymond Lee]2 KB (238 words) - 12:04, 20 January 2011
- * Raymond - are we ready to implement as a widget on person page? * Raymond installing new network card4 KB (646 words) - 17:33, 1 September 2016
- ** Chris Grove, Kimberly Van Auken, Raymond Lee, Karen Yook, Paul Sternberg, Wen Chen, Ranjana Kishore, Juancarlos Chan * Raymond Lee -- ontology tools etc.5 KB (696 words) - 13:32, 13 July 2018
- ...niela, Faye, Jae, Juancarlos, Karen, Kimberly, Magz, Mark, Paulo, Ranjana, Raymond, Scott, Stavros, Todd, Valerio, Wen2 KB (239 words) - 17:32, 3 December 2020
- | Raymond ||3/16-3/29 ||8/3-8/162 KB (241 words) - 23:04, 13 August 2010
- * coordination between CalTech and Hinxton (Gary, Raymond, Wen), due to the large scale analysis data2 KB (213 words) - 18:30, 1 February 2018
- |[[User:raymond|Raymond]] |[[User:raymond|Raymond]]16 KB (2,207 words) - 23:06, 9 January 2014
- *Raymond: how stable is Datomic? *Raymond: how do we deal with discrepancies between acedb and datomic7 KB (1,137 words) - 17:57, 17 November 2016
- ...gene knockdown phenotypes for more than 100 individual RNAi experiments.||raymond@its.caltech.edu ...e loss in a particular cell lineage leads to loss of mutant rescue, etc. ||raymond@its.caltech.edu11 KB (1,688 words) - 11:06, 21 December 2011
- Raymond: Would be good if there were two dynamic links which were updated as Raymond: it's useful to have new release (dev) ASAP. Would like to continue to7 KB (1,220 words) - 15:50, 25 November 2011
- === Tissue enrichment tool (Raymond) ===5 KB (689 words) - 15:35, 7 April 2016
- *Raymond: integration is important; we need to talk about how much work needs to be **Raymond: will look at it13 KB (2,097 words) - 22:48, 7 April 2011
- * Ranjana will discuss with Raymond and Kevin * Juancarlos and Raymond have been working on5 KB (818 words) - 15:55, 1 November 2018
- Some discussion from Todd and Raymond, modified model slightly.3 KB (354 words) - 11:08, 3 December 2010
- ...n leverage the flow from the CalTech site visits to organise the workshop (Raymond / Kimberley)2 KB (280 words) - 17:48, 1 April 2019
- * Ranjana forwarded a help desk issue, will make a ticket. Raymond, have we offered what they want ? Magda and Mark will look into it. Paul2 KB (279 words) - 16:01, 7 July 2022
- ...gene knockdown phenotypes for more than 100 individual RNAi experiments.||raymond@its.caltech.edu ...e loss in a particular cell lineage leads to loss of mutant rescue, etc. ||raymond@its.caltech.edu16 KB (2,310 words) - 11:05, 21 December 2011
- * Raymond: One person from each site should be there to cover any WormBase knowledge. * Raymond: Help desk github ticket was removing contact information. Now that github5 KB (794 words) - 16:30, 3 June 2021
- Raymond: Since these are not published, we can't curate them and that't the main di2 KB (303 words) - 15:59, 4 November 2021
- *Raymond and Wen worked on putting on Amazon cloud *Switch credit cards (from Raymond's to Caltech)6 KB (971 words) - 16:24, 6 October 2011
- The help desk queue includes Raymond Lee, Scott Cain, Karen Yook, Wen Chen, Mark Quinton-Tulloch, Juancarlos Cha |Raymond Lee42 KB (5,348 words) - 16:49, 15 April 2024
- *Raymond will periodically check for "floating" anatomy terms *Paper-anatomy term associations in Citace Minus; Raymond will take care of them6 KB (983 words) - 18:02, 12 July 2012
- ** Raymond - SOBA for GO......simplified GO graph, use for our data2 KB (274 words) - 15:59, 14 May 2018
- ...> what do we want advice on; Kevin -> advice on tools that we don't have?; Raymond -> Trends on data? Curation and UI; Paul -> community annotation, GOCAM, Me ** Raymond -> need to produce a progress report document so that when we make oral pre11 KB (1,898 words) - 16:43, 7 June 2018
- ** Raymond, Ranjana, Gary, Jae and Karen ok to have a monthly digest. Chris, Wen no em * Caltech (Raymond & Juancarlos) will fix6 KB (906 words) - 15:34, 6 December 2018
- ** Raymond (SObA), Chris (Community curation), Mary Ann, Wen would like to go * Raymond and Juancarlos working on9 KB (1,377 words) - 16:44, 2 February 2017
- ...iomedcentral.com/articles/10.1186/s12859-016-1229-9 David Angeles-Albores, Raymond Y. N. Lee, Juancarlos Chan and Paul W. Sternberg, 2016. "Tissue enrichment2 KB (261 words) - 22:27, 5 August 2019
- * Joesph may be able to meet with Raymond Raymond and Eduardo met with Joseph and decided to have the tool running as is for6 KB (903 words) - 15:28, 2 April 2020
- ...gene knockdown phenotypes for more than 100 individual RNAi experiments.||raymond@its.caltech.edu ...e loss in a particular cell lineage leads to loss of mutant rescue, etc. ||raymond@its.caltech.edu13 KB (1,960 words) - 11:07, 21 December 2011
- * Raymond started documentation1 KB (199 words) - 15:33, 31 May 2013
- ...centric pages; gene centric will be geared to comparisons between species; Raymond suggested a landing page for each species; more focused on the the "what" (2 KB (306 words) - 16:32, 3 November 2016
- ** WormBase Ontology Browser - Raymond Lee * Raymond will video workshops to put online at later date. Blog hilights with summar9 KB (1,431 words) - 23:32, 23 June 2015
- * Raymond - will create our own docs3 KB (347 words) - 14:58, 4 June 2013
- === Raymond, Chris and Juancarlos are working on phenotype viewer === * Raymond and Juancarlos working on alternate displays to allow for rapid visual revi8 KB (1,220 words) - 16:26, 3 September 2015
- *On call: Adam, Cecilia, Chris, Daniela, Juancarlos, Karen, Kimberly, Paulo, Raymond, Scott, Sibyl, Todd, Valerio, Wen, Kevin, Paul D, Gary, Matt, Paul K *Raymond: can this change be coordinated with moving to the centralized curation dat5 KB (816 words) - 16:43, 17 May 2018
- *Will let Raymond know if the disease GAFs are okay after they test these for gene descriptio *Raymond needs the GAFs for WoBR4 KB (695 words) - 14:44, 3 December 2020
- *1500 - Genes in region of genetic map - Raymond *1557 - WormMine - unrecognized genes in list - Raymond, Chris6 KB (1,069 words) - 20:52, 23 July 2013
- *Raymond will take precautions to restore properly; should take a week or less *Raymond lifted Todd's directories over to new hard drive7 KB (1,074 words) - 17:19, 4 October 2012
- ** Gene Name Sanitizer (Wen/Raymond/Caltech?) ** Anatomy and Cell (Raymond)5 KB (670 words) - 16:00, 5 August 2021
- * Raymond establishing a WormBase development environment that Juancarlos can use * Todd can give an AMI (?) ID , letting Raymond create an instance8 KB (1,225 words) - 16:33, 3 October 2013
- * will happen in December and Raymond will update the mails * Raymond added some comments above4 KB (688 words) - 17:08, 21 November 2019
- *** Anatomy function -> focus on site of action -> Raymond *** Is the cell lineage browser gone? Yes, lost in the Datomic transition. Raymond: info is in the ontology browser (relationship between nuclei and cells).5 KB (787 words) - 18:10, 25 August 2022
- * Raymond, Gary, Chris interested in going (to join phenotype ontology developers mee2 KB (305 words) - 17:05, 19 April 2018
- *Cell-centric curation: Raymond Lee ([[Media:18-2008-SAB-Lee.ppt|slides]])2 KB (242 words) - 17:09, 6 January 2011
- ...o a summary graph to see it for a different gene. Please send feedback to Raymond, Chris or Juancarlos.6 KB (850 words) - 01:12, 22 August 2015
- * Juancarlos and Raymond working on * Raymond has URL constructor, for private/internal use; will share internally8 KB (1,262 words) - 15:34, 3 May 2018
- ** Raymond looked into the variant data but we don't have additional info. In terms of ...in cell by cell data. How are we going to serve our users with these data? Raymond: what we have right now is an expression profile. This matches with small s6 KB (982 words) - 16:54, 1 September 2022
- *Raymond: once Gary Williams/Michael Paulini send Tier II files, we can incorporate2 KB (303 words) - 09:13, 5 October 2012
- * Raymond trying to annotate axioms for anatomy function * Raymond attempting to use Noctua to draw relationships between anatomy terms and fu8 KB (1,289 words) - 18:11, 10 November 2016
- * What testing of generation of the GAF could be done (and sent to Raymond)? * Raymond will cover WormBase Ontology Browser8 KB (1,120 words) - 16:19, 5 March 2015
- * Raymond: should we go through a two tier process for models?2 KB (296 words) - 01:51, 5 September 2015
- **Raymond: used for code development/versioning by OICR; may be the best use for Bitb *Raymond: WormBase mirrors8 KB (1,282 words) - 17:08, 7 July 2011
- *Karen, Raymond, Chris will talk to Todd Gene interaction dumping script (Raymond/Todd)9 KB (1,302 words) - 16:38, 2 June 2011
- ** Maybe, but should be free text instead of a modeled tag for WBPersons (Raymond) * (Raymond) Two aspects of strain curation: 1) strains that are available (e.g. from C9 KB (1,490 words) - 15:35, 6 October 2016
- ...he reporter class has a text field that can be used for this. Paul/Daniela/Raymond will discuss the details.2 KB (347 words) - 14:07, 2 July 2021
- ...ndled as other Paper DOIs are handled -might be formalized (DB_info as per Raymond's suggestion)7 KB (934 words) - 19:56, 27 September 2016
- * Student will work with Raymond, Kimberly to do anatomy function & Noctua/GO-CAM curation on dauer developm * Raymond et al. will communicate with Todd and web team about how to handle the data5 KB (670 words) - 15:31, 3 June 2021
- *** Eduardo, Raymond, Todd, Chris3 KB (408 words) - 17:27, 17 December 2020
- * SObA top-slicing (summary view) gets tricky; Raymond looking into better solutions, if available * Todd and Raymond meeting this afternoon5 KB (698 words) - 16:11, 3 January 2019
- * Raymond will look into it2 KB (327 words) - 16:50, 4 January 2018
- === Development environment for Raymond === *Raymond was trying to keep up with the AMIGO 2 development upgrades13 KB (1,983 words) - 16:40, 7 November 2013
- ...gene knockdown phenotypes for more than 100 individual RNAi experiments.||raymond@its.caltech.edu|| ...e loss in a particular cell lineage leads to loss of mutant rescue, etc. ||raymond@its.caltech.edu ||17 KB (2,417 words) - 11:04, 21 December 2011
- * Raymond and Todd will see if they can find a log for archaeological reasons2 KB (329 words) - 17:10, 6 August 2015
- Raymond : Doesn't seem right for the paper not to get priority. We don't need to w Todd : Agree with Raymond, rely on users to look at data + evidence and make their own decisions.15 KB (2,374 words) - 16:00, 17 July 2014
- * https://github.com/WormBase/website/issues/1788 - Abby thinks it's working. Raymond will test it.3 KB (427 words) - 18:31, 3 October 2013
- Raymond asked PAD for insight on how RRIDs are being used, Paul D replied:2 KB (350 words) - 11:50, 6 January 2017
- Follow up question about alternative transcripts...Raymond forwarded email from user.2 KB (376 words) - 16:20, 10 July 2017
- ** Needs patching for WS282 (Raymond) - Adam thinks it can be done as a patch as a hot fix after release.2 KB (354 words) - 16:05, 16 September 2021
- *Let Raymond know of any problems *Raymond can/will create individual user accounts (for those who want it) with acces7 KB (1,059 words) - 15:37, 1 August 2013
- *1:35 Visualizing data with the Ontology Browser and Enrichment Analysis. Raymond Lee (10 mins)2 KB (306 words) - 08:41, 7 June 2019
- *Mary Ann sent to James and Raymond *Adapt to handle anatomy data types that Raymond actually curates7 KB (1,123 words) - 16:39, 6 December 2012
- *Any new web pages for C. elegans researchers, send to Raymond *Raymond from Caltech, with Juancarlos7 KB (1,064 words) - 19:12, 3 November 2011
- '''1400 - 1425''' Cell pages -- Raymond3 KB (357 words) - 20:30, 6 June 2014
- * Raymond: Do we have a common place to track interlibrary loan requests? Could be us *Wen, Daniela, and Raymond will look at the datasets to work out how to incorporate. Start simple.5 KB (873 words) - 14:41, 4 February 2021
- *Raymond made links from Anatomy pages to Gloworm site *Raymond working on fixing5 KB (847 words) - 17:49, 1 March 2012
- *Raymond & Juancarlos working on incorporation of AMIGO2 into WormBase *Raymond ordered a new server computer6 KB (864 words) - 15:32, 6 June 2013
- * Raymond has been looking into * Raymond had updated device drivers and network cards for Mangolassi and Tazendra5 KB (843 words) - 16:32, 4 December 2014
- **Please contact Raymond if you have any problems with this.2 KB (351 words) - 18:32, 15 December 2016
- * [Addressed by Wen and Raymond] GSEA for enrichment analysis https://github.com/WormBase/website/issues/943 KB (458 words) - 16:53, 1 February 2024
- Patch file/Interbuild (Raymond) **Raymond had question about whether it's a good idea in general to create people wit7 KB (1,103 words) - 18:28, 5 May 2011
- *Responsible data curator: Raymond *Responsible data curator: Raymond17 KB (2,401 words) - 22:36, 29 November 2017
- Raymond mentioned that one should adhere to NCBI standards.2 KB (358 words) - 14:03, 13 January 2014
- * http://wobr2.caltech.edu/~raymond/cgi-bin/soba_biggo.cgi * Juancarlos and Raymond looking for feedback; let them know6 KB (911 words) - 17:13, 6 June 2019
- Raymond * will get relationships from Raymond10 KB (1,453 words) - 18:52, 4 February 2015
- * Raymond - Also biocuration automation. * Raymond - For a full build it's difficult to do diffs, something Kevin said a while9 KB (1,570 words) - 16:36, 21 September 2023
- * Let Raymond know if you have an idea for another (extra) use of the server * Let Raymond know if anyone has uses for the server6 KB (927 words) - 14:23, 10 August 2017
- * Laboratory search for "Raymond Chan" did not produce the desired/expected results * Once GAF is generated, will send to Raymond for inclusion into WOBr8 KB (1,218 words) - 17:46, 2 April 2014
- * Raymond: This would be good to discuss at the upcoming International C. elegans Mee2 KB (384 words) - 20:25, 21 May 2015
- ''WormBook's WormMethod chapter by Raymond Lee containing core web resources for C. elegans research''3 KB (514 words) - 23:35, 13 August 2010
- **Caltech: Chris, Gary, Juancarlos, Karen, Kimberly, Mary Ann, Paul, Ranjana, Raymond, Wen, Cecilia3 KB (435 words) - 19:56, 4 March 2016
- * documentation - Raymond2 KB (293 words) - 15:57, 24 May 2013
- ** Raymond will ask who sent them the original file.3 KB (440 words) - 08:42, 3 September 2020
- * Raymond & Juancarlos have been working on autocomplete tool for search bar; not tri * Raymond and Juancarlos have resolved most suggestions8 KB (1,229 words) - 15:31, 1 June 2017
- * There appeared to be missing gene-phenotype annotations; Raymond contacted Kevin Howe * Raymond will try to work on from Taiwan8 KB (1,234 words) - 12:36, 4 June 2014
- * Raymond fixing up to send around first draft * Raymond would like to wrap up today or tomorrow6 KB (910 words) - 15:23, 5 October 2017
- * Has been less stable lately; Raymond has needed to restart machine * Send ideas to Raymond6 KB (912 words) - 01:40, 15 September 2017
- * Wen and Raymond discussed; will add an "uncertain" tag or something similar * Raymond will take a look at6 KB (921 words) - 16:52, 4 January 2018
- * Raymond: suggests we formally take note of how well model proposals play with Datom2 KB (403 words) - 16:33, 6 April 2017
- * Raymond/Juancarlos request testing * Raymond has been in contact with Chris about cell ontology9 KB (1,336 words) - 15:32, 2 June 2016
- * Diff tool: Raymond and Juancarlos created a prototype diff tool (for comparing two genes, for * Raymond: concerned about automatically generating strains based on imports from the6 KB (897 words) - 14:27, 3 October 2019
- *Would be best if Raymond could work with a programmer (Juancarlos?) *Juancarlos and Raymond still working on9 KB (1,339 words) - 19:02, 31 January 2013
- * Being incorporated and worked on by Raymond * Raymond acquired expression clusters from Wen to test the (David's) anatomy enrichm6 KB (906 words) - 21:38, 30 September 2015
- * Raymond will send around reviews * Raymond working on methods paper for SObA display10 KB (1,586 words) - 15:30, 2 November 2017
- ** Priority one is to get the images in that we already sent to us (Raymond)3 KB (563 words) - 03:27, 19 March 2022
- *Paul and Raymond will explore the possibility of a WormBase Foundation for users to make don3 KB (525 words) - 17:20, 4 April 2024
- ** 16.45 Ontology browser and use - Raymond Lee3 KB (438 words) - 07:19, 6 October 2014
- Raymond - Should take this as a base and build up3 KB (452 words) - 17:48, 7 March 2013
- *Raymond bought a new HD **loss of function studies. Raymond will talk to Nikhil and see how he can contribute to curation. We have part12 KB (1,878 words) - 15:55, 6 September 2012
- '''Daniela - working on brugia life-stages with Gary, Raymond and Mark Blaxter'''3 KB (564 words) - 17:27, 20 December 2012
- *Raymond: need for a staging and test environment? Todd: this is in motion3 KB (523 words) - 11:20, 3 April 2020
- |anatomy||Anatomy terms and function||N/A||Raymond Lee||find Anatomy_term<br>find Anatomy_function||||4 KB (580 words) - 18:13, 6 October 2017
- ...the form of .ace files so we can also have whatever information is in WS. Raymond wrote a script to sync those files to tazendra for further processing/use.4 KB (600 words) - 18:40, 2 February 2022
- Abstract platform provided by WormBase? - Raymond/JC3 KB (552 words) - 17:23, 3 January 2019
- * Action Item: Raymond, Wen and Gary to look at this. Raymond: Is it possible to go backwards from a Wormbase modENCODE data boint to the7 KB (1,182 words) - 13:50, 20 April 2012
- * Raymond and Juancarlos have worked on a SObA-graph based comparison tool to compare * Raymond intending to share progress on SObA at December Alliance All-Hands Face-to-13 KB (2,025 words) - 16:28, 7 November 2019
- raymond proposes adding four sub tags to ?Anatomy_term model4 KB (641 words) - 15:23, 19 June 2012
- * Raymond looked at his data types; at first glance thinks there may be quite a few f * Raymond, Juancarlos, David Angeles and Joseph developed automated data processing p11 KB (1,676 words) - 15:28, 2 May 2019
- * Project to J & Raymond working with Post Doc and UG student3 KB (561 words) - 18:39, 6 February 2020
- * As one-offs, Raymond can take newly generated GAFs from curators and process for testing. * Raymond updated all servers/machines10 KB (1,474 words) - 15:54, 30 April 2014
- *Anatomy_term -Raymond Raymond suggested to leave the sex distinction out of the ontology. We are therefor14 KB (2,213 words) - 19:26, 12 February 2019
- ''Raymond: should we have 3 letter codes for phenotypes? Agreed this would be good su4 KB (597 words) - 18:34, 31 October 2012
- * Decided to put data on FTP. Daniela, Sibyl, Raymond will set up a meeting with Seth to get further insight of raw data and on h4 KB (576 words) - 16:28, 17 June 2021
- | Remove (raymond) | Remove (raymond)35 KB (4,174 words) - 10:52, 2 February 2015
- * CenGen has a weekly call: have invited Wen, Daniela, and Raymond ** MovieURL -> 32 - Mohler -> move to movies -> talk again with Raymond9 KB (1,377 words) - 16:36, 4 March 2021
- * Tools? Raymond can bring up enrichment analysis * Raymond trying to use the SObA approach to display logically defined phenotype term8 KB (1,189 words) - 14:10, 5 July 2018
- :cell/other-name (919 values, 0 evidence -- Raymond suggests killing this class?)7 KB (604 words) - 18:21, 11 November 2014
- ...een RO terms and GO - shouldn't be a major issue to have them in datomic. (Raymond): Make sure that there are enough query tools for datomic for curators to r4 KB (691 words) - 17:16, 21 June 2018
- ...etting settled; Paul will find out who is managing the server room and let Raymond know * Raymond fixed; now Spica, wobr and wobr2 are back up11 KB (1,782 words) - 17:55, 13 May 2021
- * Raymond: Don't know the SSL details; has made Caltech machines using SSL layer * Juancarlos, Raymond, Sibyl, and Todd will discuss later (Slack channel?)11 KB (1,703 words) - 15:27, 5 April 2018
- * Raymond: XCO, experimental condition ontology * Daniela, Raymond, Chris working on importing existing cell and anatomy object images into WB8 KB (1,224 words) - 15:34, 21 July 2016
- * Raymond will look into the exposed URL from forwarding.5 KB (732 words) - 14:46, 29 April 2016
- Raymond4 KB (650 words) - 17:08, 1 September 2011
- * Raymond, Chris interested * Raymond has upgraded OS from 8-year old OS, beefed up hardware9 KB (1,369 words) - 22:47, 5 August 2020
- ** Wen, Raymond, and David should discuss * Raymond will discuss with Juancarlos to centralize12 KB (1,809 words) - 16:33, 1 March 2018
- ** Start a cronjob to check for network connections? Already set up (Raymond) * Raymond reporting on meeting with Scott Emmons and neural connectivity data10 KB (1,547 words) - 21:31, 2 January 2024
- * Anatomy & Cells - Raymond4 KB (610 words) - 13:12, 14 November 2014
- * Juancarlos and Raymond working on4 KB (604 words) - 15:28, 5 May 2016
- *Discussion between Raymond, Wen, Daniela, etc.4 KB (612 words) - 17:13, 1 December 2011
- ...types/results are discussed for more than 100 RNAi experiments||''"yes"''||raymond@its.caltech.edu ...mutant rescue ||''"p.580"''; ''"yes"''; ''"fig2"''; ''"daf-16 mosaic"'' ||raymond@its.caltech.edu21 KB (3,156 words) - 23:03, 13 August 2010
- * Raymond prepared to give short talk on SObA to the Alliance group4 KB (694 words) - 21:33, 19 December 2019
- Raymond suggests : To have a first pass form for curators that shows author's6 KB (1,045 words) - 21:14, 24 September 2010
- |Raymond Lee |Raymond12 KB (1,663 words) - 16:28, 9 October 2023
- * Raymond and Juancarlos have been working on5 KB (701 words) - 15:38, 4 June 2020
- ...criptome datasets. A gold-standard set of markers needs to be implemented.[Raymond, Daniela] ...s for working closer with WormAtlas on this issue. [see also Q4] [Paul S., Raymond, Lincoln, Todd?]11 KB (1,649 words) - 16:10, 19 July 2018
- * Raymond requests that people take a look and send feedback5 KB (715 words) - 15:49, 4 August 2016
- ...en a set of genes, find commonalities in (for example) anatomy– Wen and/or Raymond will address this in their talks.5 KB (763 words) - 00:51, 19 September 2014
- * Raymond considering submitting abstract ...WormBase needs to set up our own AWS and SGD can give us their code. Will Raymond be able to help set up the AWS? Once installing the AWS SPELL following SGD14 KB (2,226 words) - 15:31, 7 June 2018
- * Raymond and Juancarlos are working on a display of genes that may be exclusively ex * Raymond & Juancarlos working on final details10 KB (1,464 words) - 17:09, 13 August 2015
- Raymond suggests : To have a first pass form for curators that shows author's6 KB (1,024 words) - 23:02, 13 August 2010
- * Anatomy function model: Proposal to make Remark entry unique; Raymond asking to remove the UNIQUE in the model * Raymond: Cell Press taking in tables of reagents with URLs; we should make sure tha11 KB (1,664 words) - 16:29, 7 December 2017
- ** SObA? (Raymond); still working on multi-species SObA5 KB (747 words) - 16:31, 5 December 2019
- *Curation stats per paper (Raymond): write comments in a remark field; traceable, transparent, available5 KB (843 words) - 17:26, 1 November 2012
- ** Raymond and Juancarlos figuring out web code structure6 KB (823 words) - 19:38, 2 January 2014
- Igor/Raymond8 KB (820 words) - 10:51, 21 December 2011
- * Raymond and Juancarlos have worked out a way to display top-slicing of the ontology ...with top slicing function. You can try it here <http://wobr2.caltech.edu/~raymond/cgi-bin/soba_biggo.cgi> by entering the name of your favorite gene.6 KB (910 words) - 16:43, 7 March 2019
- |No API needed at this time. Ask Raymond about this class.12 KB (1,559 words) - 18:14, 15 June 2011
- * Raymond working on addressing warnings and errors (missing definitions, duplicate l7 KB (1,044 words) - 14:45, 8 October 2020
- **Raymond tried to install a 64-bit machine (free); wouldn't work7 KB (1,070 words) - 17:47, 1 March 2012
- *Raymond stabilized Elbrus7 KB (1,117 words) - 16:39, 4 August 2011
- * Raymond: lots of neuro data8 KB (1,213 words) - 15:29, 6 July 2017
- ...p://www.wormbase.org/species/c_elegans/gene/WBGene00000898#-bc-10 SObA]) - Raymond8 KB (1,130 words) - 13:27, 4 February 2016
- *''' Anatomy/cell''' -> ''acedb on spica'' with corrections by Raymond ; Summary of anatomy ontology term<br>10 KB (1,696 words) - 17:21, 25 July 2013
- ** Raymond: The throughput will be handled appropriately depending on demand; priority8 KB (1,121 words) - 14:01, 15 July 2019
- ...o see how the sentences look, will feedback any ontology related issues to Raymond9 KB (1,366 words) - 15:19, 6 September 2018
- * Raymond: want to use design pattern strategy to curate9 KB (1,364 words) - 15:39, 7 February 2019
- Raymond - CMS system is designed for this, but we would need to set that up == Wen Raymond fixed the link-outs to these sites, not updated on the site yet<br>36 KB (4,994 words) - 17:27, 14 February 2024
- * Juancarlos & Raymond will continue to work on Cytoscape view for another month, then we will mak10 KB (1,475 words) - 16:57, 5 November 2015
- ** Raymond: simply set up forwarding at our end?9 KB (1,375 words) - 16:04, 18 April 2024
