Citace upload report

Goals for upload report

• Summary of the uploaded data classes/objects - this summary should be blind to requests from curators and should alert Caltech to missing data classes or severe changes in numbers of objects within preexisting data classes
• Summary of curation work - this summary should be curator driven, in some cases the summary will require a more involved aceperl query to get at the actual annotation rather than a straight data class object number.

Data classes/types curated and sent to Hinxton

For each data type, please indicate what information you want to know upon Citace data testing and what information you want to include the report to Hinxton.

Data class/type	Curation focus	Postgres Tables ( oa tables)	Curator	Current Citace dump stat	Requested stat(s) for Citace report	Requested stats for build release
Antibody	C. elegans antibodies	abp_	Daniela Raciti	find Antibody Paper with Antibody Total Paper--Antibody links
anatomy	Anatomy terms and function	N/A	Raymond Lee	find Anatomy_term find Anatomy_function
concise	Concise Description	con_	Ranjana Kishore, Kimberly Van Auken	Gene with Concise_description	Automated_description Papers for Concise_description Papers for Automated_description
construct	Constructs used in various classes	cns_	Daniela Raciti	None	construct #new papers curated for construct average # constructs curated/new paper
disease	Worm models of human disease	dis_	Ranjana Kishore	Disease_relevance	Papers for Gene with Experimental_model Papers for Gene with Disease_relevance
exprpat	Expression pattern of genes	exp_	Daniela Raciti	find Expr_pattern Gene with Expr_pattern Paper with Expr_pattern
gene cluster	phylogenetic profile clusters	N/A	Karen	none	# gene cluster objects
go	Gene ontology annotation		Kimberly Van Auken, Ranjana Kishore	Gene with GO_term Total Gene--GO_term links
gene regulation	Gene regulation	grg_	Chris Grove	Interaction with Regulatory
gene interaction	Genetic and physical interactions	int_	Chris Grove, Gary Schindelman, Kimberly Van Auken, Karen Yook	Interaction Interaction with Physical Interaction with Genetic Interaction with Predicted Paper with Interaction
Microarray	microarray	N/A	Wen Chen	find Microarray_experiment
Expression_cluster	Expression Cluster	N/A	Wen Chen	find Expression_cluster
Analysis	Proteomics Analysis	N/A	Wen Chen	find Analysis MassSpec*
molecule	Drug/Chemical/Small molecule objects	mop_	Karen Yook	Interaction Molecule with WBProcess
movie	Movies	mov_	Daniela Raciti	none
paper	Papers	pap_	Kimberly	find Paper Total Paper--Gene links
person	People	two_	Cecilia	find Person
phenotype	Annotation of phenotypes to variations, strains, rearrangements, transgenes	app_	Gary Schindelman	with Phenotype_not_observed Transgene with Phenotype Strain with Phenotype	variation-|phenotype link
picture	figures from papers	pic_	Daniela Raciti	find Picture
biological_topic	Topic curation	pro_	Karen Yook	none	links
process_term	Process term creation	prt_	Karen Yook	find WBProcess
RNAi	RNAi sequence and phenotype curation	rna_	Chris Grove, Gary Schindelman	find RNAi RNAi with Phenotype	RNAi with Phenotype_not_observed Paper with RNAi
transgene	Transgene object curation	trp_	Daniela Raciti	find Transgene Paper with Transgene Total Paper--Transgene links