WBConfCall 2013.10.02-Agenda and Minutes

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Agenda

Please add your agenda items here.

SAB

Make a final decision about timing and location of SAB, so that people can plan holidays and other meetings accordingly.

Elsevier linking

To summarize: Elsevier would like to put a link to Wormbase via adding a logo on the ScienceDirect pages, in the same fashion they are doing for MGI and EMAGE. go here

http://www.sciencedirect.com/science/article/pii/S0012160604007456 and look on the right column 'Data for this article'

The link to Wormbase will point to the paper page showing the referenced curated data e.g. http://www.wormbase.org/resources/paper/WBPaper00001770#30--10

In order to do this they want us to approve the following statement

"By emailing this logo, I grant Elsevier and its sub-licensees a royalty-free, perpetual, irrevocable, worldwide, non-exclusive right and license to display, publish and otherwise use this logo in any format in connection with the linking between [DATABASE NAME] and ScienceDirect. [NAME] [DATABASE NAME]"

Caltech attorneys gave the green light but they would like to have the OK from other Wormbase members. So they need an e-mail from somebody at Hinxton and OICR stating that there are no objections.


Expression visualization (Joachim)

  • data naming conventions
  • data consolidation

WS241 upload schedule

Help desk issues:

NameServer2

  • will be ready for testing outside of Hinxton Friday or Monday

Apologies for absence: Mary Ann

Minutes

SAB

move to next call, since Paul is not in the meeting

Elsevier linking

Kevin and Todd to write an agreement email to Daniela. Daniela will forward to Elsevier.

Expression visualization (Joachim)

  • aggregation data by conditions - pretexted, control vocabulary, ontology
    • life stage
    • tissues
    • relicates
    • expriments
  • interactive, on-the-fly image generation
    • filter button
    • pre-processed tables, since acedb is slow
  • is not working now with safari yet

more discussions on RNAseq expression visualization, please follow: https://github.com/WormBase/website/issues/885#

WS241 upload schedule

  • model release on 11/22/2013
  • data upload on 11/29/2013


Help desk issues:

NameServer2

  • will be ready for testing outside of Hinxton Friday or Monday