WBConfCall 2020.07.02-Agenda and Minutes

Agenda

WS277 release

• Final stages of getting prepared for release by Web Team
• New Amino Acid-based JBrowse Protein schematic (https://staging.wormbase.org/species/c_elegans/protein/CE29545#03--10)

WS278 Models and Build Schedule

• Confirm model proposals and changes

https://github.com/WormBase/wormbase-pipeline/releases/tag/models.wrm.WS278

• • Genotype/Disease_model_annotation -- All tested and files already submitted to citace here at Caltech
  • ECO_term -- same as above
• Build schedule

Help Desk

• https://github.com/WormBase/website/issues/7748
  • User requiring list of Transposons and their locations
    • Raymond responded with a linked to Paul David's response in similar ticket #6735
    • Will follow up to see if this satisfies what he is requiring

• https://github.com/WormBase/website/issues/7774
  • User looking for statistics page similar to http://www.informatics.jax.org/mgihome/homepages/stats/all_stats.shtml

Minutes

• Raymond introduced Fernand to the team. He is focusing on anatomy function curation.

• Genotype new class submitted with WS2778 upload from CalTech
  • To handle Genotype EBI needs to change config for new datatype (genotype)
    • New tags get automatically pulled in but a new class needs a new line in config file.
  • Ranjana work directly with Sibly on the Disease Disease Widget to make UI changes for genotype for WS278

• Are opening up the discussion for getting statistics for pages from either Elasticsearch, the database, or from EBI and displaying them on a WB page
  • Will be starting to discuss on Slack and if needed will start meetings.

• Paul S believes it is time to start looking into organizing the Project Meeting.

• Reactome Views in WormBase?
  • Need to figure out criteria with regards to WB while being aware of the Alliance.
  • Some pathways transfer from human to C. elegans work well and others not so much. Signaling pathways are an example of ones that are more problematic.
  • Decided to set up a meeting between Reactome and CalTech curators.