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Jump to navigationJump to search- How to build a WormBase Virtual Machine
- How to build a frozen release
- How to make a new Textpresso category
- INDI
- INTERNET RESOURCES
- INTRODUCTION
- ISB2014 Babbitt
- ISB2014 Session2 Systems Biology
- ISB2014 Session3 Functional Annotations
- ISB2014 Session4 Microbial Informatics
- ISB2014 Session5 Data Integration and Sharing
- ISB2014 Stein
- ISB2014 Workshop4 Big Data Curation
- ISB2014 WormBase notes
- ISB2014 group notes
- Importing PFAM Images
- Importing Protein Structure Data
- Importing Protein Structure Data Images
- In book
- In vitro flagging
- Innate Immunity, Defense Response, MAPK Signaling Pathway
- Installing Catalyst
- Installing Phenote
- Installing Phenote+
- Instructions for Genetics
- Instructions for curators
- InterMOD meeting jdmswong
- InterMine Strategy Meeting: June 7, 2013
- InterMine Strategy Meeting: May 14, 2013
- InterMine Strategy Meeting: May 21, 2013
- InterMine Strategy Meeting: May 29, 2013
- InterMine Strategy Meeting: May 9, 2013
- InterMine Strategy Meetings
- Interaction Display in the Gene Page
- International C. elegans Meetings - UCLA
- Introduction to Phenote+
- Invalid PMIDs in postgres and WormBase
- Issues-10/1/2013
- Issues-10/15/2013
- Issues-10/8/2013
- Issues-11/12/2013
- Issues-11/5/2013
- Issues-3/12/2013
- Issues-3/14/2013
- Issues-3/19/2013
- Issues-3/21/2013
- Issues-3/26/2013
- Issues-3/28/2013
- Issues-3/7/2013
- Issues-4/16/2013
- Issues-4/18/2013
- Issues-4/2/2013
- Issues-4/23/2013
- Issues-4/25/2013
- Issues-4/30/2013
- Issues-4/4/2013
- Issues-4/9/2013
- Issues-5/2/2013
- Issues-5/21/2013
- Issues-5/23/2013
- Issues-5/28/2013
- Issues-5/30/2013
- Issues-5/7/2013
- Issues-5/9/2013
- Issues-6/11/2013
- Issues-6/13/2013
- Issues-6/18/2013
- Issues-6/20/2013
- Issues-6/4/2013
- Issues-6/6/2013
- Issues-7/16/2013
- Issues-7/23/2013
- Issues-7/30/2013
- Issues-7/4/2013
- Issues-7/9/2013
- Issues-8/20/2013
- Issues-8/27/2013
- Issues-9/10/2013
- Issues-9/17/2013
- Issues-9/24/2013
- Issues-9/3/2013
- January 12, 2010
- Javascript libraries
- Jdmswong notes
- Jdmswong sandbox
- Jenkins Checks
- Jfp postgres table details
- Job Openings
- Journal first-pass (jfp) postgres table details
- Journals
- Juancarlos
- June
- June 2012 - Weekly Pipeline Set-up
- KEY REFERENCES
- Key publications
- LEGO Curation
- Lexicon Development Tool
- Life Stage
- Linking To WormBase
- Linking script pipeline
- Lists
- Local installation of WormBase
- Log file management and analysis
- Lung Development Targets (November 2009 - February 2010)
- MacOSX(Leopard)
- Mac OSX(Leopard)
- Mailing lists
- Main Page
- Main Page Temp
- Managing Perl Libraries
- Managing Perl libraries across nodes
- Managing servers hosting virtual machines
- Mapped Transgenes
- Mapping the GAF to GO OA tables
- March
- Mark Up Work Flow
- Mark up policy
- Markup excerpts
- May
- Meeting Abstracts
- Meeting abstracts
- Meetings
- Meloidogyne hapla
- Meloidogyne incognita
- Merging Papers
- Merging Papers - Top Secret from the Bush administration torture memos
- Methods Journals
- Mf hmm tool
- Microarray Data
- Micropub Pipeline
- Micropublication tracker
- Micropublications
- Migrating frozen releases to OICR
- Migration
- Milestones and progress
- Mining AceDB/WormBase with AcePerl
- Mining WormBase with Bio::DB::GFF
- Mirror sites and frozen releases
- Missing Abstracts in PLoS One, PLoS Biol Papers
- Missing PMIDs
- ModENCODE
- ModENCODE Analysis & metadata discussion
- ModENCODE Integration status
- ModENCODE TilingArray
- Model changes
- Model changes to capture and consolidate human disease data
- Modeling data for Infectious agents
- Molecule
- Molecule model build
- Molecule papers
- Monitoring services and servers
- Most wanted web features
- Movie
- MySQL database replication
- N-Browse Installation & Interaction Data
- N-Z titles
- NBC sign off documentation
- NGASP
- NGASP Results
- NGASP submit
- Nematode resequencing and diversity
- Nematode sequencing summary
- New 2012 Curation Status
- New GO Progress Report Script
- New Model Implementation Checklist
- New Paper Model - Model and Changes to Pipeline
- Nippostrongylus brasiliensis
- Noctua - Upload of WB Manual Annotations
- Noctua model curation tracking table
- Nomenclature
- November 2012 - Weekly Pipeline Set-up
- November 2014 Phenotype2GO Mappings File
- November 25, 2009 - Sequence Curation Flags
- OA-phenotype
- OA and scripts for disease data
- OA for disease term
- OA forms, tables, scripts, etc
- OA forms, tables, scripts, etc.
- OICR-Configuring the development machine
- Old pipeline for disease data
- Onchocerca volvulus
- Ontologies
- Ontology Annotator
- Ontology Annotator - The GO annotation interface
- Ontology Annotator wish list
- Optimizing site performance
- Orthologs: use cases for searches
- Orthology, Homology and Paralog data in WormBase
- Other nematodes
- Output files - Petra, Kimberly, Sidd, Juancarlos
- Outstanding Model questions
- Overall performance
- Overview
- Overview of molecule pages
- Overview of process pages
- PMID:26412237
- Paper Editor
- Paper ID conversion CGI
- Paper Pipeline
- Paper Pipeline - To Do List
- Paper Pipeline Scripts
- Paper Pipeline To Do - May 2011
- Paper Tables in Postgres
- Paper Type
- Paper editor.cgi code
- Papers that use GO - 2015
- Partslist
- Person
- Phasing out the manual annotations
- Phenote+ Phenotype Curation
- Phenote .ace citace upload
- Phenote .ace dump and citace upload SOP
- Phenote .obo files
- Phenote .obo files and where they come from
- Phenote Fields
- Phenote cgi wish list
- Phenote quirks/bugs/fixes to request
- Phenote quirks and bugs/fixes to request
- Phenotype2GO Analysis
- Phenotype2GO Mappings
- Phenotype2GO Mappings File
- Phenotype2GO Mappings Sept. 09
- Phenotype2GO Paper Inclusion List
- Phenotype2GO pipeline SOP
- Phenotype Ontology Development
- Phenotype micropublications
- Phenotypes
- Physical Interactions
- Picture Data Model
- Pictures
- Pipeline
- Pipeline for identifying papers with disease or disease gene ortholog
- Pipeline for identifying papers with drugs
- Pipeline for markup
- Populating Species Tag
- Populating dois
- Populating the OA and New Dumping Script
- Possible assembly errors
- Postgres Query
- Postgres management
- Postgres queries
- Postgres status
- Presentations
- Primary data Tag
- Pristionchus pacificus
- Process Pages
- Process page mock-ups
- Process page summary
- Process pages
- Process pages summary
- Processing Gene and Protein Names for Searches and Curation
- Processing NBP alleles
- Profiling
- Progress Report 2011
- Project-wide documentation
- Project Calendar
- Project meeting agendas and minutes
- Project page for author first pass form
- Publications
- Query Builder
- Query Results
- Quick response cheatsheet
- RNAi
- RNAi/archive
- RNAi curation
- RSS implementation
- RSS news feeds
- Random Selection of New Training Set Papers
- Reagents
- Reference Genome Reports - Annotation Coverage
- Regional and Topical Meetings
- Related web resources
- Relations Ontology
- Release
- Release Schedule
- Release note requests
- Release notes
- Removing Dead Genes from Papers
- Reporting Genetic (Phenotype) information for an allele
- Reporting sequence for RNAi
- Request Account
- Request tracker
- Resources
- Results
- Review Call Agenda and Minutes
- Rnaseq library details
- SOP for GO citace and GO consortium data uploads
- SOP for generating GO files for citace and GO consortium uploads
- SOPs
- SPELL
- SVM Guidelines
- Sample paper and data for exploring updates
- Sanger documentation
- Scripts for file dumping and conversion
- Searching WormBase for Information About C. elegans (Wiley)
- Searching WormMine
- Sentence Saver for Category Seed
- Sequence Feature
- Session management
- Site Map
- Site statistics
- Software Life Cycle: 1. Updating The Development Server
- Software Life Cycle: 3. QA/QC and Performance Benchmarking
- Software Life Cycle: 4. Updating The Production Servers
- Software Release Cycle: 1. Updating The Development Server
- Software for nematode research
- Source and maintenance of non-WBGene info
- Species available through WormBase (overview)
- Specifications for CCC Curation from Textpresso Search Page
- Specifications for WB gpi file
- Specifications for a Community Annotation Form
- Specifications for a DAF for gene-disease data
- Specifications for a GAF for gene-disease data
- Specifications for a GAF for gene-life stage data
- Specifications for data submission to the Alliance
- Specifications for source files
- Specifications for the OA for WBGene-disease
- Starting a new Journal
- Steinernema carpocapsae
- Strain
- Strains
- Strongyloides ransomi
- Strongyloides ratti
- Subsequent Phenotype2GO Uploads to Postgres
- Suggested pre-release data checks
- TAIR
- TAIR CCC
- TBA
- Tasks
- Tasks in Progress
- Technology
- Teladorsagia circumcincta
- Test and training regions
- Test page
- Test searches - from web site or by script? - Arun, Kimberly, Juancarlos
- Testing
- Testing Form - 20130611
- Testing Search Results - 20130509
- Texpresso/Author/Curator interim form
- Textpresso
- Textpresso-based automated extraction of concise descriptions
- Textpresso Central
- Textpresso related forms
- Tissue Specific Transgene Markers
- Tools