Subsequent Phenotype2GO Uploads to Postgres

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  • After the initial upload to postgres, we will need a maintenance pipeline to make sure that we don't continue to upload annotations that have been edited by curators.
  • To do this, we'll need to essentially repeat the process we did for the initial upload, but now also include a 'GAF' dumped from postgres in the files that need to be compared for gene-paper connections.
  • The postgres file could just be a file of gene-paper connections for all 'P' annotations. This file would include all annotations, even those that have the NODUMP toggled (especially those, since they're the ones we definitely don't want to re-upload).


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