Issues-7/23/2013

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All meetings: WebDev Issues Meetings

Tuesday July 16th, 10:30am 5th floor kitchen


Progress on tasks to resolve before WS239

JB: Test suite expansion

  • GBrowse tests
    • goes through config - dl image for each track/species
    • need to benchmark - could be slow
  • Jenkins
    • continuous integration - tests run whenever we push to staging
    • need to test api tests
    • add emails - yes

Write tests! Unit Testing

JB: Outstanding GBrowse Issues

  • 4 are 'Under testing'
1356
1410
1503
1529
  • Bug report: missing bp? 1517 1518
    • will look at this after testing

For 239:

  • Test GFF3 and update species still using Bio::DB::GFF to Bio::DB::SeqFeature::Store 910
  • Standardize GBrowse config 909
    • is there still work for this? - FOR 239

JD: July Issues

For review:

  • Process pages 337 - July 18
  • Wiki Pathway 1415 1525 - July 18
  • Predicted exon sturcture 942 - July 23

In progress:

Cytoscape

  • upgrade to js version

Triage new issues

  • Download widget URLs wrong 1586 - JB
  • Transgene table reporter column wrong 1585 - JB
  • 500 server error dl motifs 1583 - JD
  • Disease page - genes_by_biology missing 1472 - JD
  • wrong paper associations 1049 -AC
  • save table bug 1484 - JB
  • Bristol hard-coded 1308 - AC
  • 500 error widget - molecular details 1272 - JD


Not urgent (but should be done before WS239):

  • Blast - e value sorting 1588 - JB
  • Consecutive questions help tab 1582 - AC
  • Feature request: Features connected to Transcripts 1567 - JD
  • New table in associations widget - anatomy page 1549 - AC
  • start not found/end not found for CDSes 1506 - AC