Issues-7/23/2013

All meetings: WebDev Issues Meetings

Tuesday July 16th, 10:30am 5th floor kitchen

Progress on tasks to resolve before WS239

JB: Test suite expansion

• GBrowse tests
  • goes through config - dl image for each track/species
  • need to benchmark - could be slow
• Jenkins
  • continuous integration - tests run whenever we push to staging
  • need to test api tests
  • add emails - yes

Write tests! Unit Testing

JB: Outstanding GBrowse Issues

• 4 are 'Under testing'

1356
1410
1503
1529

• Bug report: missing bp? 1517 1518
  • will look at this after testing

For 239:

• Test GFF3 and update species still using Bio::DB::GFF to Bio::DB::SeqFeature::Store 910
• Standardize GBrowse config 909
  • is there still work for this? - FOR 239

JD: July Issues

For review:

• Process pages 337 - July 18
• Wiki Pathway 1415 1525 - July 18
• Predicted exon sturcture 942 - July 23

In progress:

• Lineage browsing 741 - July 25
  • http://wiki.wormbase.org/index.php/Creating_a_tool

Cytoscape

• upgrade to js version

Triage new issues

• Download widget URLs wrong 1586 - JB
• Transgene table reporter column wrong 1585 - JB
• 500 server error dl motifs 1583 - JD
• Disease page - genes_by_biology missing 1472 - JD
• wrong paper associations 1049 -AC
• save table bug 1484 - JB
• Bristol hard-coded 1308 - AC
• 500 error widget - molecular details 1272 - JD

Not urgent (but should be done before WS239):

• Blast - e value sorting 1588 - JB
• Consecutive questions help tab 1582 - AC
• Feature request: Features connected to Transcripts 1567 - JD
• New table in associations widget - anatomy page 1549 - AC
• start not found/end not found for CDSes 1506 - AC