Issues-5/21/2013

All meetings: WebDev Issues Meetings

Tuesday MayBoardroom

Milest

Release	total	tharris	acabunoc	jdmswong	joejimbo	unassigned	due
WS238	58	13	26	2	3	7

Update on Intermod meeting / Last week in general

Intermod meeting:

• Intermine 2.0 (alpha)
  • no jsps
  • restful api
  • embeddable
  • beta later this year
• Monarch group meeting on Thurs - no WB representative
  • bring data from various mods together
• QueryBuilder page - add graph view (brainstorming)
• Human mine discussed
• request: Ability to share and edit other ppls templates
  • template versioning
• correlating documentation - branding?
• user profiles - personas

Developer meeting:

• how we're running mines
• Jenkins - rebuilds mine when mine folder updated

Breakout

• didn't get to talk through much issues

Curations Issues - for Intermine

• getting curators more involved, making templates
• scheduled tutorials

Issues in progress

Joachim

• #1034
  • Important - backend done. Front-end need to figure out
• #628
  • not major - WS239
• #155
  • gbrowse problems - reassign to lincoln
• #910
  • received files, will finish for WS238
• #909
  • not major - WS239
• Production issue: stability issues WS236, seeing "panic: fold_constants JMPENV_PUSH returnedwormbase/extlib/lib/perl5/Plack/Util.pm line 118."
  • need to improved logging

JD

• Intermine branding
  • header and footer working on

Intermine:

• linkouts configured to WormBase

1. get mine up for IWM
2. release pipeline
3. extras

• accounts - link them

• Cytoscape:
  • update on Process page
  • [1]
    • Cell lineage browsing using Cytoscape - ready to start this?
• on hold till the IWM

• Merge redundant columns in Curatorial history table
  • [2]

• WormMine issues:

1. "Genes" with a Primary Identifier that is not of the format "WBGene0000####" Intermine

   the cambridge logo in the footer is too prominent Intermine

   "Gene Name" under protein queries should be "Protein Name" Intermine

   add genus, species, and other name Intermine

2. yieldsheader for each row Intermine
3. on the gene report is non-informative Intermine
4. are missing their primary name Intermine
5. error message Intermine
6. using Cytoscape? feature request Webteam UI-data display
7. for WormMine Intermine
8. message Intermine
9. exporter Intermine
10. functionality Intermine
11. WormMine use cases Intermine