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  • Software Life Cycle: 3. QA/QC and Performance Benchmarking
    == Check out code to the staging QA/QC website == wb-dev> cd /usr/local/wormbase/website/staging
    362 bytes (53 words) - 18:13, 13 July 2011
  • Design Specs: CSS
    Define standardized scheme of the next generation WormBase website using CSS ** will contain standardized scheme for the entire WormBase website
    488 bytes (68 words) - 18:48, 11 August 2010
  • Website:Adding new Species
    Whenever a new species is added, we need to update the website in several places. = Wormbase/website =
    802 bytes (113 words) - 14:10, 10 April 2014
  • Website:Model
    [[Category:Main Website (Web Dev)]]
    35 bytes (5 words) - 14:39, 19 June 2014
  • Website:Controller
    [[Category:Main Website (Web Dev)]]
    35 bytes (5 words) - 14:40, 19 June 2014
  • Creating a widget
    [[Category:Main Website (Web Dev)]]
    35 bytes (5 words) - 18:45, 19 June 2014
  • WebDev 2016.04.12-Agenda and Minutes
    ==Website== ==Datomic & website migration==
    2 KB (280 words) - 14:45, 12 April 2016
  • WBConfCall 2012.03.15-Agenda and Minutes
    === New Website release: === The new website will be launched, on schedule, on March 30th (WS230).
    1 KB (240 words) - 09:37, 16 March 2012
  • Website:GBrowse Set-up on dev.wormbase.org
    Your local WormBase website and GBrowse directory: /usr/local/wormbase/website/yourusername
    2 KB (324 words) - 19:49, 19 February 2015
  • WBConfCall 2017-05-04-Agenda and Minutes
    https://github.com/WormBase/website/issues/5588 Error 500 https://github.com/WormBase/website/issues/5586 pending query about his-36 search
    2 KB (263 words) - 22:55, 16 May 2017
  • WebDev 2016.05.03-Agenda and Minutes
    * Integrating JBrowse build into main website build (currently are stand alone scripts) == 3. Website ==
    1 KB (176 words) - 20:42, 3 May 2016
  • 2004 - West Coast Worm Meeting
    [http://www.lifesci.ucsb.edu/mcdb/labs/rothman/wcwm04.htm Meeting website]
    247 bytes (32 words) - 19:08, 10 August 2010
  • 2004 - Midwest Worm Meeting
    [http://people.ku.edu/~buechner Meeting website]
    221 bytes (27 words) - 19:08, 10 August 2010
  • Website:Testing And Profiling
    $ cd website/ $ nytprofhtml --file website/nytprof.out --out ~/nytprof --deletee
    2 KB (248 words) - 18:38, 18 June 2014
  • Issues-6/4/2013
    | [https://github.com/WormBase/website/issues?direction=desc&labels=&milestone=10&page=1&sort=updated&state=open ] | [https://github.com/WormBase/website/issues/assigned/tharris?direction=desc&labels=&milestone=10&sort=updated&st
    3 KB (347 words) - 14:58, 4 June 2013
  • Website:Configuration
    [[Category:Main Website (Web Dev)]]
    226 bytes (26 words) - 14:38, 19 June 2014
  • WBConfCall 2013.12.05-Agenda and Minutes
    https://github.com/WormBase/website/issues/2092 == GFF3 testing - website ==
    2 KB (309 words) - 19:45, 5 December 2013
  • Citing and Acknowledging WormBase
    ...AS BEEN MIGRATED TO THE [http://www.wormbase.org/about/citing_wormbase NEW WEBSITE] DO NOT EDIT IT HERE.
    217 bytes (36 words) - 12:46, 13 November 2015
  • WebDev 2011.05.11-Agenda and Minutes
    == Architecture progress for new website (Todd; 10 minutes) == * we will have a pool hosting new website
    1 KB (182 words) - 20:41, 11 May 2011
  • WebDev 2016.03.29-Agenda and Minutes
    ==Website (Sibyl)== A draft plan of what to do with Website, datomic-to-catalyst and Docker:
    895 bytes (140 words) - 14:23, 29 March 2016
  • WBConfCall 2016.09.15-Agenda and Minutes
    ** Should we put these up on the website as a supplement/replacement of the user guide? ** Reiterated from the last call that WB would push on with the website releases as scheduled with Sibyl and Scott managing the staging process.
    854 bytes (146 words) - 16:08, 15 September 2016
  • WBConfCall 2011.07.21-Agenda and Minutes
    === Website ===
    1 KB (213 words) - 16:30, 21 July 2011
  • WBConfCall 2019.08.15-Agenda and Minutes
    ...said it would take "years". This is causing difficulties for the WormBase website, and several downstream tools. We will to discuss this with Ranjana to see https://github.com/WormBase/website/issues/7187
    1 KB (165 words) - 18:42, 15 August 2019
  • C.remanei
    == Website == *website fixes
    2 KB (324 words) - 19:34, 11 August 2010
  • 2008-SAB Meeting
    == 9:30 - 11:00: Website, UI, Build, Orthology == *Website overview and future plans: Todd Harris ([[Media:2-2008-SAB-Harris.ppt|slide
    2 KB (242 words) - 17:09, 6 January 2011
  • WBConfCall 2013.11.21-Agenda and Minutes
    * [[https://github.com/WormBase/website/issues/2019 2019]] - gff3 implementation no discussion necessary until gff3 * [[https://github.com/WormBase/website/issues/2026 2026]] - gff3 implementation no discussion necessary until gff3
    6 KB (909 words) - 21:56, 21 November 2013
  • WormBase Source Code
    website-main and website-sync % hg clone ssh://hg@bitbucket.org/tharris/wormbase/ website-main
    4 KB (664 words) - 13:20, 2 June 2014
  • Design Specs: Templates
    To build a templating system for the next generation of the WormBase website.
    375 bytes (51 words) - 18:49, 11 August 2010
  • Issues-11/5/2013
    * https://github.com/WormBase/website/issues/885 ...f time/space requirements summarized at http://wiki.wormbase.org/index.php/Website:WormMine_Builds
    2 KB (222 words) - 15:42, 5 November 2013
  • WBConfCall 2015.02.19-Agenda and Minutes
    Website: http://www.genetics-gsa.org/celegans/2015/ *website usability
    1 KB (146 words) - 16:44, 19 February 2015
  • Design Specs: GBrowse Integration
    alias /usr/local/wormbase/website/staging/extlib/gbrowse2/current/tmp/images/; alias /usr/local/wormbase/website/staging/extlib/gbrowse2/current/html/;
    3 KB (388 words) - 20:30, 27 January 2011
  • Issues-9/10/2013
    [[Website:Visualization_Library_Assessment]] [[Website:Visualization_with_ggplot2_of_the_R-Project]]
    2 KB (273 words) - 14:57, 10 September 2013
  • Managing Perl Libraries
    ...ion of the site. This enables us to keep unique sets of libraries for each website. website/production/extlib - ''The current production version of the website''
    6 KB (868 words) - 18:47, 13 April 2015
  • WBConfCall 2023.01.19-Agenda and Minutes
    * this morning; snRNA sequences: https://github.com/WormBase/website/issues/8911 * Server error 500 (2 days ago): https://github.com/WormBase/website/issues/8908
    464 bytes (65 words) - 16:59, 19 January 2023
  • WBConfCall 2024.03.21-Agenda and Minutes
    *https://github.com/WormBase/website/issues/9444 ...are in the manual curation at Caltech postgres database but don't show on website (check if dumped for data upload)
    2 KB (243 words) - 16:07, 4 April 2024
  • WBConfCall 2024.01.04-Agenda and Minutes
    * https://github.com/WormBase/website/issues/9391 * https://github.com/WormBase/website/issues/9390
    618 bytes (81 words) - 21:36, 2 January 2024
  • Using private development sites
    ...the main development site at http://dev.wormbase.org/ (/usr/local/wormbase/website-classic) into a preview site. ...heck out your changes on main development site (wb-dev:/usr/local/wormbase/website-classic) for community testing
    2 KB (381 words) - 18:42, 17 August 2010
  • Website:Visualization Library Assessment
    [[Category:Main Website (Web Dev)]]
    1 KB (156 words) - 14:48, 19 June 2014
  • Website:Mobile
    ...mprove performance on mobile devices. Those changes are explained on the [[Website:MobileWidgets| Widgets Porting]] page. ...he possible routes that have been implemented so far can be found on the [[Website:Router| Router]] page.
    5 KB (769 words) - 15:16, 19 June 2014
  • WebDev 2016.03.22-Agenda and Minutes
    * Have development website running off off Clojure API for the Gene page and pulling data from Datomic ...Clojure. There are tests that are failing now on the Datomic branch of the website because it is no longer pulling specific information from AceDB. We will ne
    2 KB (242 words) - 15:25, 22 March 2016
  • WBConfCall 2013.03.21-Agenda and Minutes
    == Website release schedule/testing (Todd) == == website release schedule (Todd) ==
    4 KB (624 words) - 17:15, 4 April 2013
  • WBConfCall 2015.07.02-Agenda and Minutes
    ** 1st of October on live website * Should we track "date last reviewed"? ([https://github.com/WormBase/website/issues/3997 3887])
    2 KB (240 words) - 08:42, 3 July 2015
  • WBConfCall 2012.10.18-Agenda and Minutes
    * Subject: [website] Feature Request: Hi guys it is really di... (#554) ** website display issue - m.tuli has responded to allele query - can someone else res
    4 KB (597 words) - 18:34, 31 October 2012
  • WBConfCall 2022.05.19-Agenda and Minutes
    https://github.com/WormBase/website/issues/8591 https://github.com/WormBase/website/issues/8605
    663 bytes (105 words) - 15:45, 19 May 2022
  • WormBook
    Maintaining the WormBook website will consist primarily of putting new chapters online. This process also in In addition, future website improvements include:
    3 KB (508 words) - 15:41, 24 September 2007
  • Developer documentation
    *[http://github.org/WormBase/website website] - ''The WormBase web application (public)'' *[http://github.org/WormBase/website-admin website-admin] - ''Administrative code (private)''
    12 KB (1,638 words) - 18:25, 18 June 2014
  • Website:MobileModels
    [[Category:Mobile Website (Web Dev)]]
    606 bytes (95 words) - 15:28, 19 June 2014
  • WebDev 2015.05.19-Agenda and Minutes
    == 2. Website manuscript ==
    513 bytes (64 words) - 13:42, 19 May 2015
  • WBConfCall 2023.09.07–Agenda and Minutes
    ** https://github.com/WormBase/website/issues/9311 ** Paulo will look for website entries that mention tazendra to change reverse proxy and any URLs.
    753 bytes (111 words) - 15:53, 7 September 2023
  • Website:WormMine Builds
    Command: <code>./website-intermine/scripts/dump_ace.sh /mnt/ephemeral0/acedb_dump_ws244</code> ./website-intermine/scripts/dump_ace.sh /mnt/ephemeral0/acedb_dump_ws244
    9 KB (947 words) - 18:27, 12 August 2014
  • WBConfCall 2023.10.19-Agenda and Minutes
    * helping curating with students - Andrea Scharf https://github.com/WormBase/website/issues/9348 ...that link outs to Article pages will go through DOI other than publisher's website.
    727 bytes (112 words) - 15:56, 19 October 2023
  • WS226 Models.wrm
    the new website architecture
    1 KB (124 words) - 11:01, 19 April 2011
  • WBConfCall 2016.03.17-Agenda and Minutes
    ...file not made during website staging process [https://github.com/WormBase/website/issues/4655 4655] * Account email & password reset request [https://github.com/WormBase/website/issues/4659 4659]
    4 KB (572 words) - 17:29, 17 March 2016
  • Website:MobileWidgets
    In order to make the website widgets work within the mobile webapp, it's been necessary to (in order): ...ated to be compatible with the format of the webapp (as described in the [[Website:MobileRouter| Router page]]).
    3 KB (492 words) - 15:30, 19 June 2014
  • WBConfCall 2018.09.06-Agenda and Minutes
    * https://github.com/WormBase/website/issues/6599 (Chis Grove query about github + anonymised email address, poss * https://github.com/WormBase/website/issues/6597 (Query from user about transcripts for a non WormBase parasitic
    896 bytes (138 words) - 16:10, 6 September 2018
  • Issues-7/4/2013
    = WormBase website issues going forward = * Login issue [https://github.com/WormBase/website/issues/1498 1498]
    1 KB (149 words) - 14:24, 4 July 2013
  • WBConfCall 2015.09.03-Agenda and Minutes
    ** Method for provisioning machines with Datomic, website, etc. * Discussion about whether or not we will show the data on the website
    2 KB (296 words) - 01:51, 5 September 2015
  • NGASP submit
    ...g. command-line options, non-nGASP training data) as outlined on the nGASP website in a separate README for each gene prediction set. Filenames should be as f
    1 KB (173 words) - 17:55, 16 August 2010
  • Reagents
    ...MAKE EDITS TO THIS PAGE; IT WILL BE DEPRECATED IN SUMMER 2011 WHEN THE NEW WEBSITE GOES LIVE.
    2 KB (271 words) - 15:10, 22 September 2021
  • WBConfCall 2017-07-20-Agenda and Minutes
    == WS260 Website Release == * Possibility to delay WS260 website release to Aug 25 (currently scheduled at Aug 4)?
    7 KB (1,077 words) - 16:26, 20 July 2017
  • WBConfCall 2013.05.02-Agenda and Minutes
    ...r for WS238, so the webteam will have additional time to develop the WS238 website, as they will release one-two weeks early for the IWM. We hope to make WS23
    742 bytes (115 words) - 15:38, 2 May 2013
  • WormCloud:Overview
    ...t is broken down into three main sections: central database, curation, and website. Docker Hub is a WebSite to a repository of Docker containers. Like GitHub for Code, this is a great
    5 KB (842 words) - 19:41, 17 February 2016
  • 2011 Advisory Board Meeting
    * <b>website development</b> ** implications of freeze on current website development - should we make this public?
    5 KB (644 words) - 22:02, 23 January 2013
  • Strains
    ...MAKE EDITS TO THIS PAGE; IT WILL BE DEPRECATED IN SUMMER 2011 WHEN THE NEW WEBSITE GOES LIVE.
    1 KB (209 words) - 21:14, 21 February 2011
  • WBConfCall 2014.10.16-Agenda and Minutes
    ...blish important news/topic curation results from the release notes, to the website
    851 bytes (131 words) - 18:06, 16 October 2014
  • WormBase-Caltech Weekly Calls December 2015
    * Ticket https://github.com/WormBase/website/issues/4424 ** Documentation plans (granular (per widget/object/feature) links from website to wiki)
    5 KB (776 words) - 16:50, 7 January 2016
  • Software Life Cycle: 4. Updating The Production Servers
    ...lease are maintained in the git [https://github.com/WormBase/website-admin website-admin] repository. staging> website-admin/update/production/purge_old_releases.sh --release WSXXX --target stag
    8 KB (1,229 words) - 16:17, 30 December 2013
  • 2013 Advisory Board Meeting
    === 9:15 - 10:30 Website / User interface === * Tour of the new website (Abby; 20 minutes)
    4 KB (462 words) - 08:54, 8 October 2014
  • WBConfCall 2013.10.17-Agenda and Minutes
    **acedb + website flat file **website flat file only with only database name and description stored in acedb
    2 KB (361 words) - 16:32, 17 October 2013
  • Building Frozen Releases
    WS100 // WS100 website WS110 // WS110 website
    8 KB (1,087 words) - 17:35, 19 June 2014
  • WBConfCall 2016.10.06-Agenda and Minutes
    https://github.com/WormBase/website/issues/5092 ...n, phenotype, GO, Human disease, intermine, nomenclature, Process&Pathway, website, sequence homology.
    2 KB (369 words) - 16:38, 6 October 2016
  • WebDev 2010.02.10-Agenda and Minutes
    [[Website:Design_Specifications|Design Specifications]]
    1 KB (163 words) - 17:51, 10 February 2010
  • Phenotype Ontology Development
    ==Website Display== *Website changes
    5 KB (653 words) - 00:23, 29 November 2014
  • Formal development strategy
    wb-dev:/usr/local/wormbase/website/DEVNAME wb-dev:/usr/local/wormbase/website/staging -> VERSION
    4 KB (600 words) - 14:55, 10 June 2014
  • WBConfCall 2022.01.06-Agenda and Minutes
    *Discuss [https://github.com/WormBase/website/issues/8499 github ticket] created in response to a recent email from Tim S ...there are relatively easy/low hanging-updates that we could make to the WB website to help acknowledge our community curators in a more systematic and promine
    985 bytes (154 words) - 21:08, 6 January 2022
  • WBConfCall 2015.10.15-Agenda and Minutes
    * Cannot generate a URL to a specific widget in website * Discussion about website being a good place to store documentation:
    3 KB (415 words) - 18:05, 22 October 2015
  • WBConfCall 2011.05.19-Agenda and Minutes
    === New website timeline - Todd ===
    3 KB (486 words) - 11:14, 21 December 2011
  • Issues-5/2/2013
    [https://github.com/WormBase/website/issues/1065 issue #1065] * TODO: look into bringing in header and footer from main wormbase website to the wormmine tool
    922 bytes (128 words) - 15:10, 2 May 2013
  • Website:MobileCollections
    [[Category:Mobile Website (Web Dev)]]
    998 bytes (168 words) - 15:29, 19 June 2014
  • WBConfCall 2023.02.16-Agenda and Minutes
    * [https://github.com/WormBase/website/issues/8940 TICKET #8940 Access the simple mine tool programmatically] * [https://github.com/WormBase/website/issues/8943 TICKET #8943 I was wondering if the 2013 version of Fascio
    1 KB (184 words) - 18:13, 16 February 2023
  • Creating a tool
    [[Category:Main Website (Web Dev)]]
    1 KB (203 words) - 18:46, 19 June 2014
  • Issues-9/3/2013
    [[Website:Visualization_Library_Assessment]]
    1 KB (142 words) - 14:49, 3 September 2013
  • Reporting sequence for RNAi
    ...rly display the information gained from an RNAi experiment on the WormBase website, the curators need to be able to figure out the exact sequence used for int
    998 bytes (156 words) - 18:56, 16 August 2010
  • June
    ====Website==== ===website===
    8 KB (1,231 words) - 22:06, 25 July 2017
  • WBConfCall 2013.06.06-Agenda and Minutes
    ** Hard to update config and website when we don't know what exactly has changed
    1 KB (168 words) - 16:06, 6 June 2013
  • Design Specs: Application Configuration
    Maintain and document configuration of the next generation WormBase website.
    1 KB (176 words) - 18:47, 11 August 2010
  • WBConfCall 2015.10.01-Agenda and Minutes
    * Caltech would like to get the new view up and running for the website ...d will work with Daniela to get anatomy-associated images displayed on the website
    2 KB (379 words) - 16:39, 1 October 2015
  • Website:Contribute from GitHub
    ...a member of the WormBase project on github - you can help us maintain the website! Right from your browser. ...ob/staging/root/templates/config/external_urls https://github.com/WormBase/website/blob/staging/root/templates/config/external_urls]
    2 KB (236 words) - 15:07, 19 June 2014
  • Topic (WBProcess) Model build
    //?WBProcess Model - renamed Biological topics for website and curation ...r tags. Ideally I would like the papers sorted by type for display on the website, that is it would be good to have papers that are reviews separate from pap
    4 KB (503 words) - 00:51, 7 November 2013
  • WBConfCall 2014.09.03-Agenda and Minutes
    == Adding worm disease models/data to the Monarch Initiative website== Sibyl: will take a look at the Monarch website
    5 KB (807 words) - 18:27, 4 September 2014
  • WebDev 2011.02.09-Agenda and Minutes
    * [[Website:Development_Milestones|Milestones]]
    941 bytes (117 words) - 22:00, 9 February 2011
  • Website:MobileViews
    Represents the home page of the mobile website. Given the simplicity of the home page, it just initializes the side global [[Category:Mobile Website (Web Dev)]]
    4 KB (562 words) - 15:29, 19 June 2014
  • Website:Application overview
    ...website is divided into two main components: the code responsible for the website (henceforth "the web application") and a series of external models in the W See the [[Website:WormBase::API|API documentation]] for additional details.
    10 KB (1,357 words) - 14:03, 19 June 2014
  • Using github
    2. Find and follow the repo WormBase/website project: https://github.com/WormBase/website
    3 KB (528 words) - 09:52, 22 June 2012
  • WBConfCall 2014.09.18-Agenda and Minutes
    * Advances – mention website restructure. * Introduction/overview of website/metrics…what’s used and not (todd)
    5 KB (763 words) - 00:51, 19 September 2014
  • Working Groups
    * Building the website page can happen in sync with building the model * This group will deal with text markup/link checking interactions with the website
    2 KB (306 words) - 15:01, 14 January 2016
  • WBConfCall 2012.02.02-Agenda and Minutes
    ** not used very much on the website ==== New Website Progress ====
    8 KB (879 words) - 09:32, 3 February 2012
  • Website:MobileRouter
    [[Category:Mobile Website (Web Dev)]]
    1 KB (193 words) - 15:28, 19 June 2014
  • WBConfCall 2015.12.03-Agenda and Minutes
    ** chromosome map tool (https://github.com/WormBase/website/issues/1103). Requires comment from web team ** Note [th]: only from the website perspective. Data curators should also look at results as it should help us
    4 KB (684 words) - 19:43, 5 December 2015
  • Website:Visualization with ggplot2 of the R-Project
    [[Category:Main Website (Web Dev)]]
    1 KB (213 words) - 14:49, 19 June 2014
  • WBConfCall 2020.06.04-Agenda and Minutes
    ...tend the website to provide this service without having to tinker with the website code itself<br>
    3 KB (494 words) - 16:08, 4 June 2020
  • Example Pages
    ...ces/laboratory/VC VC](214627 Alleles)(Too large to load!! Crashes dev:8023 website)
    8 KB (1,190 words) - 23:28, 12 March 2012
  • WBConfCall 2020.02.20-Agenda and Minutes
    * [https://github.com/WormBase/website/issues/7579 Estimate of number of C. elegans protein-coding genes with no f * [https://github.com/WormBase/website/issues/7581 I was directed here from a link on the CGC]
    5 KB (821 words) - 22:36, 20 February 2020
  • Log file management and analysis
    Website: http://hping.org/visitors
    2 KB (226 words) - 17:31, 19 June 2014
  • WBConfCall 2013.01.24-Agenda and Minutes
    ** KH: Website dynamically replace genes with live ones
    1 KB (201 words) - 19:18, 24 January 2013
  • Feature WishList
    ...For example, perhaps we could make the Brief Description editable on the website and list individuals contributions on their Person page. If done in a spec Currently we have GBrowse configuration in two places, as part of the website-gbrowse-support git repository and integrated into the new web app.
    6 KB (842 words) - 17:01, 21 October 2011
  • Design Specs: Configuration setup and 3rd party software install
    /usr/local/wormbase/website/staging/extlib/gbrowse2/current/lib/perl5/x86_64-linux-gnu-thread-multi/
    2 KB (254 words) - 21:18, 27 January 2011
  • WormBase-Caltech Weekly Calls July 2014
    ==== Nomenclature pages on the website====
    4 KB (622 words) - 16:47, 6 August 2014
  • WBConfCall 2012.12.06-Agenda and Minutes
    ...rotein dataset but also gives a very poor display for these objects on the website. * there will be a hackathon for the WS235 website release
    5 KB (752 words) - 18:55, 6 December 2012
  • WebDev 2013.03.27-Agenda and Minutes
    * data loading issue right now for website * https://github.com/acabunoc/website/compare/master...intermine-widgets
    2 KB (248 words) - 20:52, 27 March 2013
  • WebDev 2013.06.03-Agenda and Minutes
    * WormBase/website-mobile on github * reignite discussion of possible backends for website (AC, JB, TH)
    3 KB (420 words) - 15:52, 7 June 2013
  • WormBase-Caltech Weekly Calls March 2012
    New website release *We will draft an e-mail/blog post about official release of new website at end of March
    7 KB (1,019 words) - 20:58, 12 April 2012
  • Website:JBrowse set-up on dev.wormbase.org
    ...heckout of the website-admin repository, copy the build config file, <code>website-admin/jbrowse/conf/c_elegans.jbrowse.conf</code>, to a temporary working di allstats=/usr/local/wormbase/website/tharris/conf/gbrowse/releases/WS246/ALL_SPECIES.stats
    15 KB (2,419 words) - 15:11, 26 July 2016
  • WBConfCall 2019.10.03-Agenda and Minutes
    ** https://github.com/WormBase/website/issues/7306 * Sibyl: how will the website and genome browser be affect by this?
    4 KB (645 words) - 23:43, 3 October 2019
  • 2018 Advisory Board Meeting
    * Sibyl Gao -- ''Website updates and plans;, Name server UI'' '''1100''' Website: Overview; Community; Architecture -- ''Todd Harris''
    5 KB (696 words) - 13:32, 13 July 2018
  • WBConfCall 2020.12.03-Agenda and Minutes
    * [https://github.com/WormBase/website/issues/8008 egl-1 automated gene description] * [https://github.com/WormBase/website/issues/8006 We have identified from RNAseq....]
    2 KB (239 words) - 17:32, 3 December 2020
  • Issues-8/27/2013
    [[Website:Visualization_Library_Assessment]]
    1 KB (188 words) - 14:50, 27 August 2013
  • WBConfCall 2020.01.16-Agenda and Minutes
    ...kup pipeline before publication, maybe display the notes from these on the website **We don't tell people that it goes on a public website
    4 KB (613 words) - 17:56, 16 January 2020
  • WBConfCall 2018.03.01-Agenda and Minutes
    * [https://github.com/WormBase/website/issues/6213 SNPs in specific genomic regions in Hawaiian C. elegans] ...at the end of 1.5 years we should have this data available on the Alliance website
    4 KB (574 words) - 01:54, 2 March 2018
  • WBConfCall 2011.11.17-Agenda and Minutes
    database for driving the website. The new website will look at what's available and then create Blasts
    7 KB (1,220 words) - 15:50, 25 November 2011
  • Issues-4/23/2013
    JD - [https://github.com/WormBase/website/issues/870 issue #870] JD - [https://github.com/WormBase/website/issues/1065 issue #1065]
    2 KB (212 words) - 15:12, 24 April 2013
  • WBConfCall 2018.06.21-Agenda and Minutes
    ...'m not clear on how these tag values would get used in the database and/or website and if they are really needed. * Interaction tabs not loading https://github.com/WormBase/website/issues/6473
    4 KB (691 words) - 17:16, 21 June 2018
  • Issues-3/12/2013
    [https://github.com/WormBase/website/issues/889 issue #889] [https://github.com/WormBase/website/issues/870 issue #870]
    1 KB (170 words) - 16:01, 12 March 2013
  • Citing WormBase
    [[Category:Website]]
    2 KB (304 words) - 21:19, 5 July 2011
  • Website:Rearchitecture Development Duties
    * See the [[Website:Profiling|Profiling documentation]] for additional details and progress.
    2 KB (261 words) - 00:48, 24 December 2010
  • WBConfCall 2014.06.05-Agenda and Minutes
    ...eserve the current naming but could potentially result in problems for the website. Is this the case? - would be a first so should we discuss nomenclature gui ...single gene with non-overlapping transcript populations....simplifies for website, but not necessarily the best option.
    8 KB (1,391 words) - 11:57, 6 August 2014
  • WormBoard Report: August 2020
    ...#6: Create a comprehensive and user-friendly C. elegans Community WormBase Website Portal to facilitate these and future initiatives</u> ...nclude “LabHeads” in the subject line and include your institution and lab website link and preferred email address. New and current LabHeads members may also
    4 KB (641 words) - 17:26, 10 November 2020
  • WBConfCall 2015.07.16-Agenda and Minutes
    * Doesn't feel that the website/helpdesk system is the natural place....or is it? ...- GitHub requires creative use of labels. Most issues it tracks tend to be website issues. GitHub could be leveraged a little more.
    4 KB (708 words) - 16:41, 16 July 2015
  • WBConfCall 2015.03.05-Agenda and Minutes
    *Should we provide/curate SNP confirmation? ([https://github.com/WormBase/website/issues/3645 3645]) 1. Issues [https://github.com/WormBase/website/issues/3550 3550], 3551, 3615, GBrowse Overview Track lacks Landmark label
    2 KB (277 words) - 20:30, 5 March 2015
  • WBConfCall 2011.11.03-Agenda and Minutes
    **OK for build and website? **Website, yes
    4 KB (609 words) - 20:57, 3 November 2011
  • Website:WormBase::API
    [[Category:Main Website (Web Dev)]]
    2 KB (271 words) - 14:09, 19 June 2014
  • WBConfCall 2016.04.21-Agenda and Minutes
    ...Base to list of SciData repositories . See git https://github.com/WormBase/website/issues/4753 ...hment analysis reverse proxy. See github issue https://github.com/WormBase/website/issues/4750
    5 KB (732 words) - 14:46, 29 April 2016
  • WBConfCall 2013.09.19-Agenda and Minutes
    | https://github.com/WormBase/website/issues/1735 |https://github.com/WormBase/website/issues/1762
    5 KB (719 words) - 16:40, 19 September 2013
  • Github Helpdesk Working Document
    *Website form submissions ...now be tracked in the Issue Tracker on GitHub (https://github.com/WormBase/website/issues?q=is%3Aissue+is%3Aopen+label%3AHelpDesk)
    5 KB (845 words) - 17:00, 21 March 2022
  • WBConfCall 2012.07.019-Agenda and Minutes
    *Website does not use them *Ported out into ACEDB for the website
    4 KB (617 words) - 17:01, 19 July 2012
  • Acceptable use policy
    PLEASE NOTE: THIS PAGE HAS BEEN MIGRATED TO THE NEW WEBSITE. DO NOT EDIT IT HERE.
    2 KB (301 words) - 02:21, 1 April 2012
  • WBConfCall 2019.04.04-Agenda and Minutes
    *[https://github.com/WormBase/website/issues/7001 Hello! I would like to register as a new user (to ...] - Closed * [https://github.com/WormBase/website/issues/6979 ...create a new login/account, withou...] - Still open; user di
    2 KB (263 words) - 15:49, 4 April 2019
  • WS173
    * added Nemagenetag dbinfo for crossreferencing with the Nemagene website 5. See the acedb website for more information about acedb and
    6 KB (639 words) - 10:55, 21 December 2011
  • WormBase-Caltech Weekly Calls February 2012
    ...rate Endrov visualizations of Blender model and cell lineage into WormBase website? *Science-direct website links to-and-from WormBase website
    7 KB (1,070 words) - 17:47, 1 March 2012
  • Adding Data to a Widget (Example)
    Issue [https://github.com/WormBase/website/issues/2571 #2571] required showing the URL in the "URL" field on the "Over ...ains default configurations for the fields inside widgets - is in the main website directory.)
    6 KB (907 words) - 18:45, 19 June 2014
  • WBConfCall 2023.02.02-Agenda and Minutes
    ...what extent these non-canonical species need to be supported in the public website and APIs
    2 KB (348 words) - 17:52, 2 February 2023
  • Adding pmid Identifier to Paper Object
    #Go to the NCBI website: http://www.ncbi.nlm.nih.gov/guide/
    2 KB (381 words) - 16:53, 2 November 2010
  • WebDev 2010.08.11-Agenda and Minutes
    * testing proxy @ OICR. part and parcel of new website set-up
    1 KB (174 words) - 20:43, 11 August 2010
  • WebDev 2013.07.19-Agenda and Minutes
    ...links and another one making some minor changes to the DOM. I'm using the website CSS stylesheet and overriding a few properties in my main.css file. http://wiki.wormbase.org/index.php/Website:Mobile
    2 KB (270 words) - 18:32, 23 July 2013
  • WBConfCall 2014.12.18-Agenda and Minutes
    ...es across multiple projects but would like this average value to appear on website.
    2 KB (298 words) - 15:28, 23 December 2014
  • WBConfCall 2016.04.07-Agenda and Minutes
    * Breakdown website to widgets, so that they can be discussed from curation level. Widgets may
    2 KB (339 words) - 18:43, 8 April 2016
  • 2006 - EMBO Caenorhabditis Evolution Workshop
    ...dditional information, please see the [http://cwp.embo.org/w06-31 workshop website]. Further details about the host Institute can be found at (www.igc.gulbenk
    2 KB (302 words) - 19:10, 10 August 2010
  • WebDev 2013.09.27-Agenda and Minutes
    AC: Get mobile website up for WS240
    2 KB (240 words) - 16:14, 27 September 2013
  • 2006 - Development and Evolution
    Meeting Website Topic #1: http://www.union.wisc.edu/celegans/index.html
    2 KB (309 words) - 19:09, 10 August 2010
  • WBConfCall 2015.08.20-Agenda and Minutes
    ...rmMine (i.e. 250) will be in sync with the release of the versions for the website (i.e. WS250).
    6 KB (850 words) - 01:12, 22 August 2015
  • WormBase-Caltech Weekly Calls March 2011
    ...hecking for errors and inconsistencies before sending to Todd to put up on website Think about connecting website to Postgres:
    13 KB (2,097 words) - 22:48, 7 April 2011
  • WebDev 2013.09.06-Agenda and Minutes
    * PhoneGap - build app version of website
    2 KB (253 words) - 15:33, 6 September 2013
  • WormBase-Caltech Weekly Calls September 2011
    **New Website *Give each person, website, etc. a unique ID via publications
    6 KB (971 words) - 16:24, 6 October 2011
  • WormBase-Caltech Weekly Calls June 2012
    ***Develop process pages for the website? **Website/database
    6 KB (983 words) - 18:02, 12 July 2012
  • WBConfCall 2015.04.02-Agenda and Minutes
    1. GBrowse motif finder [https://github.com/WormBase/website/issues/3704 #3704] accounts on the soon-to-be-launced new CGC strain website.
    2 KB (334 words) - 09:04, 7 April 2015
  • WS192
    The website at [ftp://ftp.sanger.ac.uk/pub2/wormbase/WS192/genomes/ ftp://ftp.sanger.ac 5. See the acedb website for more information about acedb and
    6 KB (763 words) - 10:43, 21 December 2011
  • WS138
    +New Anatomy data to allow for Expr_pattern searching on the website. 5. See the acedb website for more information about acedb and
    6 KB (740 words) - 11:19, 21 December 2011
  • WBConfCall 2020.05.06-Agenda and Minutes
    ''Suggestion: be up front on twitter, website and wiki and follow the more flexible schedule.'' [https://github.com/WormBase/website/issues/7663 #7663 Homology group Overview Widget] Paul Davis commented and
    2 KB (378 words) - 17:04, 11 May 2020
  • WBConfCall 2020.05.07-Agenda and Minutes
    ''Suggestion: be up front on twitter, website and wiki and follow the more flexible schedule.'' [https://github.com/WormBase/website/issues/7663 #7663 Homology group Overview Widget] Paul Davis commented and
    2 KB (376 words) - 17:03, 11 May 2020
  • WormBase-Caltech Weekly Calls November 2021
    * GeneCards charges for inclusion of commercial reagents on their website: "Companies that wish to provide deep links to their products (e.g. reagent
    2 KB (314 words) - 19:19, 14 December 2021
  • WBConfCall 2017.01.05-Agenda and Minutes
    * [https://github.com/WormBase/website/issues/5255 #5255] Tree display of CB4856 strain. ...ic to add Basel Worm Meeting on March 16th, 2017, in Basel, Switzerland to website
    2 KB (350 words) - 11:50, 6 January 2017
  • WBConfCall 2021.09.16-Agenda and Minutes
    There are a few website tickets, mainly from gmap but would be good if someone could look at the re
    2 KB (354 words) - 16:05, 16 September 2021
  • WormBase-Caltech Weekly Calls October 2011
    ** Status of website *Put in more details about the new website?
    7 KB (1,064 words) - 19:12, 3 November 2011
  • OICR-Configuring the development machine
    website-classic // The classic WormBase website website // The new-and-improved website!
    28 KB (3,957 words) - 19:55, 5 May 2022
  • Project meeting agendas and minutes
    '''0915 - 1015''' Website Todd, Norie
    3 KB (357 words) - 20:30, 6 June 2014
  • WBConfCall 2017-04-20-Agenda and Minutes
    * [https://github.com/WormBase/website/issues/5538 Hi, I lost my account and forget my p...] 6th of April ** drop it from the website, as we can use XAce locally?
    2 KB (339 words) - 16:20, 20 April 2017
  • WBConfCall 2024.01.18-Agenda and Minutes
    * Jonathan Ewbank wants to change his primary contact on the website. ** https://github.com/WormBase/website/issues/9407
    3 KB (432 words) - 17:19, 18 January 2024
  • Website:WormMine
    You'll need both the intermine source code as well as various wormbase "website-intermine" repositories. > git clone git@github.com:WormBase/website-intermine-master.git wormmine
    9 KB (1,231 words) - 14:55, 19 June 2014
  • WebDev 2013.07.05-Agenda and Minutes
    ** tablet view: use website template
    2 KB (261 words) - 15:58, 9 July 2013
  • WBConfCall 2014.07.17-Agenda and Minutes
    ...Report: LInks from BLAT does not go anywher... https://github.com/WormBase/website/issues/2908 * Bug Report: Sorry! An error has occured.... https://github.com/WormBase/website/issues/2903
    3 KB (464 words) - 09:09, 18 July 2014
  • WBConfCall 2015.12.17-Agenda and Minutes
    ** chromosome map tool (https://github.com/WormBase/website/issues/1103). Requires comment from web team * Documentation plans (granular (per widget/object/feature) links from website to wiki)
    2 KB (371 words) - 18:38, 17 December 2015
  • WBConfCall 2023.05.18-Agenda and Minutes
    ...he list of top phenotype curators and pastes it manually to the sheet. The website is updated automatically from the spreadsheet.
    2 KB (414 words) - 16:14, 18 May 2023
  • Gene finders
    ...[mailto:cburge@mit.edu Christopher Burge], [http://genes.mit.edu/acescan/ website]
    6 KB (875 words) - 23:20, 13 August 2010
  • Administration:WormBase Production Environment
    ln -s /usr/local/wormbase/website-admin/nginx/production conf sudo cp /usr/local/wormbase/website-admin/nginx/conf/production/nginx.init /etc/init.d/nginx
    32 KB (4,370 words) - 20:48, 18 June 2014
  • WormBase-Caltech Weekly Calls February 2013
    *Person-person network viewing on website *Link anatomy terms, life stages to relevant phenotypes (at .ACE level or website level)
    8 KB (1,161 words) - 16:34, 7 March 2013
  • WB-ABM-2013-Agenda
    *"Spontaneous" updates to DB/website? Mirrors?
    3 KB (349 words) - 19:25, 18 January 2013
  • WBConfCall 2019.07.18-Agenda and Minutes
    ...FP of a specific author (http://textpressocentral.org:5002) to the main WB website under the 'community' menu and, for logged-in users, as a widget in the per
    3 KB (436 words) - 15:07, 22 July 2019
  • WS185
    5. See the acedb website for more information about acedb and
    6 KB (680 words) - 07:37, 11 January 2008
  • Co-op Documentation
    $ cd /usr/local/wormbase/website $ git clone git@github.com:WormBase/website.git
    11 KB (1,786 words) - 14:31, 17 May 2016
  • WormBase-Caltech Weekly Calls December 2017
    * Consider priority: data site, website * Slides cover step-by-step tutorials for using Wormbase website
    6 KB (921 words) - 16:52, 4 January 2018
  • WebDev 2013.08.30-Agenda and Minutes
    ...er), then I decided to keep it simple so I chose to use a variation of the website's colours.
    2 KB (357 words) - 15:40, 30 August 2013
  • WormBase Model:Clone
    URL Text // to link to MRC_geneservice website ar2 URL Text // to link to MRC_geneservice website ar2
    10 KB (1,176 words) - 22:24, 18 March 2014
  • Discussion
    #Announcement should be made via WormBase website and direct email. This competition differs from ''Drosophila'' GASP and hu
    3 KB (454 words) - 18:54, 11 August 2010
  • Issues-9/24/2013
    ** [[Website:GBrowse_Set-up_on_dev.wormbase.org]]
    3 KB (416 words) - 18:30, 24 September 2013
  • WS186
    5. See the acedb website for more information about acedb and
    6 KB (683 words) - 05:51, 3 April 2008
  • Administration:Installing WormBase
    '''The website/ directory contains one or many versions of the website:''' * /usr/local/wormbase/website, owner=[ANYONE] group=wormbase,mode=drwxrwsr-x
    26 KB (3,522 words) - 19:10, 18 June 2014
  • Design Specs: Scalability
    ...bust and scalable platform for hosting the next generation of the WormBase website. As of Jan 2010, the WormBase website resides on a heterogeneous cluster of web and database servers. A single se
    7 KB (1,258 words) - 18:49, 11 August 2010
  • WBConfCall 2015.06.18-Agenda and Minutes
    ...urators from each data type should look at "their" sections. TH working on website and outreach sections. Useful to know e.g. do people know how often we rele * Website questions - speed, ease of finding info, how to do difficult tasks, propose
    9 KB (1,431 words) - 23:32, 23 June 2015
  • GBrowse Administration
    bash> ./Configure -des -Dprefix=$HOME/website/perl/5.10.1 // GBROWSE_ROOT = /usr/local/wormbase/website/YOURSITE
    20 KB (2,916 words) - 15:25, 4 August 2016
  • WormBaseComparativeGenomicsTools
    ...ans/compara/mlagan_live.pl?geneid=Y82E9BR.3&add=10 PECAN test]]). The test-website allows to search for C.elegans sequence names and shows C.elegans/C.briggsa
    5 KB (727 words) - 17:31, 27 June 2009
  • WormBase-Caltech Weekly Calls January 2017
    === Switching website to run off Datomic ===
    9 KB (1,377 words) - 16:44, 2 February 2017
  • Administration:Installing WormMine
    ...evious build examples are available at: http://wiki.wormbase.org/index.php/Website:WormMine_Builds'''</span> | Tomcat || 6.0.29 || website
    25 KB (3,652 words) - 23:06, 25 December 2014
  • 2014 Advisory Board Meeting
    *** website and user experience
    3 KB (438 words) - 07:19, 6 October 2014
  • WBConfCall 2020.08.06-Agenda and Minutes
    ...the shared table component that forms the basis of all tables on WormBase website. The motivation was to address limitations to the existing table component,
    3 KB (496 words) - 16:06, 6 August 2020
  • WBConfCall 2013.03.07-Agenda and Minutes
    Website
    3 KB (452 words) - 17:48, 7 March 2013
  • WBConfCall 2012.12.20-Agenda and Minutes
    ...into different methods so we have control of how it gets displayed on the website''' from: https://github.com/WormBase/website/issues?labels=HelpDesk&state=open
    3 KB (564 words) - 17:27, 20 December 2012
  • WBConfCall 2017.03.02-Agenda and Minutes
    ...d info as well as step-by-step instructions on how to use the database and website
    3 KB (466 words) - 09:34, 3 March 2017
  • Micropublication tracker
    ...ble, and will be available on WormBase and on the Micropublication:biology website.
    5 KB (693 words) - 18:45, 2 February 2017
  • Using bitbucket
    **website problem/request -> webdev_team or todd
    4 KB (616 words) - 18:35, 17 August 2010
  • WBConfCall 2012.04.19-Agenda and Minutes
    ...y flexible and fast). They feel that they are 1 step away from running the website off a database called AceCouch instead of the OICR ACeDB. Can link out to wiki but not so good, better to integrate into website as this adds the pages to the search box (WS231 www.wormbase.org release).
    7 KB (1,182 words) - 13:50, 20 April 2012
  • WS183
    5. See the acedb website for more information about acedb and
    7 KB (800 words) - 10:01, 8 November 2007
  • NBC sign off documentation
    * location: /usr/local/wormbase/website/classic/cgi-perl/ontology/tree_lister
    4 KB (583 words) - 20:22, 29 July 2011
  • WormBase-Caltech Weekly Calls September 2012
    **Have different CGI forms to populate the data on the website? *Newer data not available on website yet
    7 KB (1,074 words) - 17:19, 4 October 2012
  • WBConfCall 2018.07.19-Agenda and Minutes
    ...ng on the same disease, phenotype, or gene and make these available on the website facilitating interactions between C. elegans labs and human geneticists/cli ...re are data types/sets that are old and should be archived to clean up the website and save researcher effort. Old assemblies? Early microarray or modEncode d
    11 KB (1,649 words) - 16:10, 19 July 2018
  • 2016 Advisory Board Meeting
    ** 1330-1345 - Website - architecture, structure, usage, outreach - Todd ** 1350-1400 - Focus on new website features - Sibyl
    8 KB (1,130 words) - 13:27, 4 February 2016
  • WBConfCall 2012.08.02-Agenda and Minutes
    **New Help desk feature for reporting issues on website - will create a ticket on github
    3 KB (560 words) - 16:24, 2 August 2012
  • WormBase-Caltech Weekly Calls April 2011
    **Concensus at meeting was that lab website + PI website + papers + meetings are good sources.
    7 KB (1,103 words) - 18:28, 5 May 2011
  • WBConfCall 2023.09.21–Agenda and Minutes
    * https://github.com/WormBase/website/issues/9322 * https://github.com/WormBase/website/issues/9328
    9 KB (1,570 words) - 16:36, 21 September 2023
  • WormBase-Caltech Weekly Calls April 2012
    New Website Interaction object displays on WormBase website
    7 KB (1,158 words) - 17:20, 3 May 2012
  • Website:View
    [[Category:Main Website (Web Dev)]]
    5 KB (687 words) - 14:10, 19 June 2014
  • WS184
    5. See the acedb website for more information about acedb and
    7 KB (831 words) - 07:36, 11 January 2008
  • WormBase-Caltech Weekly Calls February 2011
    **Paul: Testing, spot-checking website for errors Newsletter for new website release? Yes
    8 KB (1,282 words) - 17:08, 7 July 2011
  • Software Life Cycle: 1. Updating The Development Server
    The update pipeline code is available in the website-admin module on github: tharris> git clone git@github.com:WormBase/website-admin.git
    25 KB (3,632 words) - 03:11, 28 October 2013
  • Specifications for WB gpi file
    ...e GAF, but I think the slightly different purpose of this file (Noctua, GO website searches, text mining) makes it beneficial to include the Other_name entrie
    5 KB (720 words) - 20:46, 10 October 2016
  • WormBase-Caltech Weekly Calls May 2014
    * "Noncore" interactions will be omitted from website ...into binary interactions, we can tell Abby to display in Cytoscape on the website
    8 KB (1,234 words) - 12:36, 4 June 2014
  • WBConfCall 2014.07.03-Agenda and Minutes
    ...ugh looking at the Evidence attached to CGC_name is does not look like the website is displaying it anyway (a separate issue). In any case, I think there is n ...ublication evidence over person evidence in our various data output modes (website, GAF files, WormMine queries, scripted concise descriptions, etc.)?
    15 KB (2,374 words) - 16:00, 17 July 2014
  • WBConfCall 2018.12.06-Agenda and Minutes
    ** https://github.com/WormBase/website/issues/6747 ** https://github.com/WormBase/website/issues/6775
    4 KB (575 words) - 18:18, 6 December 2018
  • WS208
    5. See the acedb website for more information about acedb and
    5 KB (581 words) - 16:50, 21 December 2011
  • WS212
    5. See the acedb website for more information about acedb and
    5 KB (582 words) - 11:16, 21 December 2011
  • Web2.0 Javascript use and maintenance
    ...fine the look&function of your dataTable, for more pls look at dataTable's website.
    6 KB (671 words) - 16:43, 20 August 2013
  • WormBase-Caltech Weekly Calls August 2018
    * Open question about which tables on the Alliance website should be prioritized for acquiring sorting and filtering functionality ...terns for the alliance import so they will be discoverable on the Alliance website and will be hyperlinked to the WormBase detailed records
    9 KB (1,366 words) - 15:19, 6 September 2018
  • WormMine
    || GO project website (We should record the CVS revision number of the ontology file we use so w || GO project website.
    15 KB (2,088 words) - 16:16, 15 October 2020
  • WBConfCall 2021.04.01-Agenda and Minutes
    ...ng dealt with or closed, except github ticket [https://github.com/WormBase/website/issues/8156| #8156] * https://github.com/WormBase/website/issues/8156 - - needs a reply from textpresso group -Valerio will take care
    4 KB (709 words) - 13:27, 5 April 2021
  • Publications
    THIS PAGE HAS BEEN MIGRATED TO THE NEW WEBSITE:
    6 KB (781 words) - 02:18, 1 April 2012
  • WormBase-Caltech Weekly Calls January 2016
    * Website: http://www.e-mergeglobal.com/
    4 KB (640 words) - 19:07, 11 February 2016
  • WormBase-Caltech Weekly Calls August 2011
    ...ion can be collected and displayed on the fly (but this will slow down the website considerably)
    4 KB (650 words) - 17:08, 1 September 2011
  • Unused Attributes
    ...e, need to discuss syncing or transferring data, data is not being show on website --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) ...e, need to discuss syncing or transferring data, data is not being show on website --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC)
    35 KB (4,174 words) - 10:52, 2 February 2015
  • Textpresso
    First two items cover general tool and website feature requests. Then, curation pipelines for each datatype =Textpresso Website Feature Requests=
    17 KB (2,401 words) - 22:36, 29 November 2017
  • WBConfCall 2014.03.06-Agenda and Minutes
    ...be sent to the modENCODE DCC at UCSC for incorporation into the modENCODE website.
    5 KB (796 words) - 21:05, 10 March 2014
  • WS204
    5. See the acedb website for more information about acedb and
    6 KB (648 words) - 16:16, 21 December 2011
  • WBConfCall 2014.11.13-Agenda and Minutes
    [https://github.com/WormBase/website/issues/3363 #3363] - rol-3/srf-2 Typo in ?Interaction object See [https://github.com/WormBase/website/issues/3311 ticket 3311]. What can be achieved quickly and easily?
    4 KB (610 words) - 13:12, 14 November 2014
  • WormBase-Caltech Weekly Calls April 2016
    ...ossible SGD person will spend 10-15 minutes introducing the respective MOD website, very basic navigation and search.
    4 KB (604 words) - 15:28, 5 May 2016
  • WS187
    5. See the acedb website for more information about acedb and
    6 KB (647 words) - 16:43, 21 December 2011
  • WS199
    5. See the acedb website for more information about acedb and
    6 KB (661 words) - 16:51, 21 December 2011
  • WS171
    5. See the acedb website for more information about acedb and
    6 KB (652 words) - 10:55, 21 December 2011
  • WS207
    5. See the acedb website for more information about acedb and
    6 KB (675 words) - 16:42, 21 December 2011
  • WormBase-Caltech Weekly Calls November 2013
    ...blog) about what topic we have focused on for that release of the database/website (at the time the site goes live for that release) ** Website options, comment and annotation visibility while browsing pathways
    10 KB (1,664 words) - 17:02, 4 December 2013
  • Unit Testing
    # change directory into your [https://github.com/WormBase/website Github Website] clone.
    8 KB (936 words) - 18:39, 18 June 2014
  • WS131
    5. See the acedb website for more information about acedb and
    6 KB (669 words) - 11:18, 21 December 2011
  • WS107
    5. See the acedb website for more information about acedb and
    6 KB (659 words) - 11:17, 21 December 2011
  • WS203
    5. See the acedb website for more information about acedb and
    6 KB (662 words) - 16:50, 21 December 2011
  • WS163
    5. See the acedb website for more information about acedb and
    6 KB (645 words) - 10:57, 21 December 2011
  • WBConfCall 2019.11.21-Agenda and Minutes
    * [https://github.com/WormBase/website/issues/7432 Request: Import single cell transcription profiling experiment * [https://github.com/WormBase/website/issues/7435 WormBase BLAST no longer provides links to gene/protein #7435]
    4 KB (688 words) - 17:08, 21 November 2019
  • WBConfCall 2022.08.18-Agenda and Minutes
    ...t for the community and alert them we need data on those? Can advertise on website, can add to the grant.
    5 KB (787 words) - 18:10, 25 August 2022
  • WS158
    5. See the acedb website for more information about acedb and
    6 KB (673 words) - 11:07, 21 December 2011
  • WS209
    5. See the acedb website for more information about acedb and
    6 KB (687 words) - 16:50, 21 December 2011
  • WS198
    5. See the acedb website for more information about acedb and
    6 KB (692 words) - 16:51, 21 December 2011
  • WS197
    5. See the acedb website for more information about acedb and
    6 KB (672 words) - 16:43, 21 December 2011
  • WS201
    5. See the acedb website for more information about acedb and
    6 KB (665 words) - 16:42, 21 December 2011
  • WS175
    5. See the acedb website for more information about acedb and
    6 KB (680 words) - 10:54, 21 December 2011
  • WS200
    5. See the acedb website for more information about acedb and
    6 KB (722 words) - 16:43, 21 December 2011
  • WS117
    5. See the acedb website for more information about acedb and
    6 KB (695 words) - 11:17, 21 December 2011
  • WS146
    5. See the acedb website for more information about acedb and
    6 KB (670 words) - 11:09, 21 December 2011
  • WS135
    5. See the acedb website for more information about acedb and
    6 KB (689 words) - 11:19, 21 December 2011
  • WS160
    5. See the acedb website for more information about acedb and
    6 KB (706 words) - 10:50, 21 December 2011
  • WS214
    5. See the acedb website for more information about acedb and
    6 KB (709 words) - 16:49, 21 December 2011
  • Design Specs: Database Connectivity
    ...d value in concatenation (.) or string at /home/xshi/work/project/wormbase/website-2.0/lib/WormBase/API/Role/Service.pm line 106.
    6 KB (980 words) - 18:48, 11 August 2010
  • WBConfCall 2022.09.01-Agenda and Minutes
    * Fosmid and clone availability [https://github.com/WormBase/website/issues/8649 #8649] * https://github.com/WormBase/website/issues/8761
    6 KB (982 words) - 16:54, 1 September 2022
  • WS122
    5. See the acedb website for more information about acedb and
    6 KB (721 words) - 11:18, 21 December 2011
  • WS205
    5. See the acedb website for more information about acedb and
    6 KB (711 words) - 16:31, 21 December 2011
  • WS196
    5. See the acedb website for more information about acedb and
    6 KB (748 words) - 16:41, 21 December 2011
  • WormBase-Caltech Weekly Calls January 2013
    *"Spontaneous" updates to DB/website? Mirrors? *ACEBD and website will display only updated genes but have a "Historical_gene" tag and a rema
    10 KB (1,553 words) - 18:04, 7 February 2013
  • SPELL
    IV. About the website
    6 KB (964 words) - 18:49, 22 May 2018
  • WS210
    5. See the acedb website for more information about acedb and
    6 KB (721 words) - 16:46, 21 December 2011
  • WS182
    5. See the acedb website for more information about acedb and
    6 KB (716 words) - 16:48, 21 December 2011
  • WS142
    5. See the acedb website for more information about acedb and
    7 KB (720 words) - 11:09, 21 December 2011
  • WS112
    5. See the acedb website for more information about acedb and
    6 KB (735 words) - 11:17, 21 December 2011
  • WS213
    5. See the acedb website for more information about acedb and
    6 KB (764 words) - 16:45, 21 December 2011
  • WS191
    5. See the acedb website for more information about acedb and
    6 KB (756 words) - 16:53, 21 December 2011
  • WS188
    5. See the acedb website for more information about acedb and
    6 KB (769 words) - 11:01, 21 December 2011
  • WS211
    5. See the acedb website for more information about acedb and
    6 KB (766 words) - 16:38, 21 December 2011
  • WS178
    5. See the acedb website for more information about acedb and
    7 KB (762 words) - 10:53, 21 December 2011
  • WS176
    5. See the acedb website for more information about acedb and
    7 KB (783 words) - 10:46, 21 December 2011
  • WS172
    5. See the acedb website for more information about acedb and
    7 KB (783 words) - 10:55, 21 December 2011
  • WormBase-Caltech Weekly Calls June 2011
    Website (Todd)
    5 KB (752 words) - 17:07, 7 July 2011
  • WS220
    (These are UTR spans as displayed on the UTRome project website) splicing is not accounted for in the feature. 5. See the acedb website for more information about acedb and
    16 KB (1,762 words) - 11:10, 21 December 2011
  • WS154
    5. See the acedb website for more information about acedb and
    7 KB (749 words) - 11:08, 21 December 2011
  • WS216
    5. See the acedb website for more information about acedb and
    7 KB (818 words) - 11:10, 21 December 2011
  • WS206
    5. See the acedb website for more information about acedb and
    7 KB (796 words) - 16:46, 21 December 2011
  • WS202
    5. See the acedb website for more information about acedb and
    6 KB (770 words) - 11:06, 21 December 2011
  • WS180
    5. See the acedb website for more information about acedb and
    7 KB (771 words) - 10:52, 21 December 2011
  • WormBase-Caltech Weekly Calls January 2021
    * This is the repo that makes that website: https://github.com/Munfred/wormcells-data
    5 KB (873 words) - 14:41, 4 February 2021
  • WormBase-Caltech Weekly Calls January 2012
    *Table from 2000 Review, human/C. elegans orthologs and diseases - put on website?
    5 KB (847 words) - 17:49, 1 March 2012
  • WormBase-Caltech Weekly Calls November 2014
    ...lude a link to data submission forms from data widgets within the WormBase website
    5 KB (843 words) - 16:32, 4 December 2014
  • WormBase Staff Resources
    ....org''' account instantly grants additional privileges on the new WormBase website. As people matriculate onto the project they can quickly integrate with ot :https://github.com/WormBase/website/issues
    7 KB (1,036 words) - 14:30, 14 January 2016
  • WBConfCall 2021.06.03-Agenda and Minutes
    * Kevin: Produce trees in the background, but don't show on the website. Is an Alliance deliverable. To display trees may want to add to Alliance * GitHub ticket: https://github.com/WormBase/website/issues/8185
    5 KB (794 words) - 16:30, 3 June 2021
  • Hinxton 2015.07- Meeting minutes
    *** github website - website issues and helpdesk
    11 KB (1,714 words) - 11:04, 27 July 2015
  • WS195
    ...e /users/yourname/wormbase' at the command prompt.<br><br>5. See the acedb website for more information about acedb and<br>&nbsp;&nbsp;&nbsp; using xace.<br><
    11 KB (1,614 words) - 16:52, 21 December 2011
  • WS147
    5. See the acedb website for more information about acedb and
    7 KB (815 words) - 11:09, 21 December 2011
  • WS170
    5. See the acedb website for more information about acedb and
    8 KB (820 words) - 10:51, 21 December 2011
  • WormBase-Caltech Weekly Calls May 2019
    * Let's release to the website, but gather feedback from (naive) users to see what documentation we need
    6 KB (911 words) - 17:13, 6 June 2019
  • WormBase-Caltech Weekly Calls October 2019
    ...earning/education-calendar/2020/05-may/biocuration-2020-conference Meeting website] * [https://icbo2020.inf.unibz.it/ Meeting website]
    13 KB (2,025 words) - 16:28, 7 November 2019
  • WS127
    5. See the acedb website for more information about acedb and
    7 KB (872 words) - 11:18, 21 December 2011
  • WormBase-Caltech Weekly Calls October 2013
    ...WBProcess class name, but only refer to them as "Biological Topics" on the website ...base flat file (on GitHub) read by the website https://github.com/WormBase/website/blob/staging/root/templates/config/external_urls
    13 KB (1,983 words) - 16:40, 7 November 2013
  • WormBase-Caltech Weekly Calls November 2018
    * New WormBase release linked to the new SPELL website (https://spell.wormbase.org) * https://github.com/WormBase/website/issues/6734
    6 KB (906 words) - 15:34, 6 December 2018
  • WS179
    5. See the acedb website for more information about acedb and
    8 KB (843 words) - 10:53, 21 December 2011
  • WS177
    5. See the acedb website for more information about acedb and
    9 KB (819 words) - 10:53, 21 December 2011
  • Development workflow - webdev
    ...view all merged pull requests using this link: https://github.com/WormBase/website/pulls?q=is%3Apr+is%3Amerged * Look at the [https://github.com/WormBase/website/issues?labels=under+testing&state=open open issues 'under testing'].
    9 KB (1,476 words) - 20:00, 11 August 2014
  • WS181
    5. See the acedb website for more information about acedb and
    8 KB (885 words) - 16:47, 21 December 2011
  • WormBase Model:Transgene
    Construction_summary Text //To keep in sync with website tags - moved all Remark info to Construction Summary. Remark comments are b
    13 KB (1,341 words) - 20:12, 22 September 2015
  • WS190
    5. See the acedb website for more information about acedb and
    8 KB (913 words) - 16:46, 21 December 2011
  • WS169
    5. See the acedb website for more information about acedb and
    8 KB (787 words) - 10:56, 21 December 2011
  • WBConfCall 2016.11.17-Agenda and Minutes
    *Issue [https://github.com/WormBase/website/issues/5243 #5243] "[wormbase-help] Invitation to contribute a chapter fo *504 website problem yesterday affecting ontology browser and lineage problem
    7 KB (1,137 words) - 17:57, 17 November 2016
  • WormBase-Caltech Weekly Calls September 2017
    * Could consider not putting journal article (primary) papers on WB website until it has curation (by WB or community)
    6 KB (910 words) - 15:23, 5 October 2017
  • WS194
    5. See the acedb website for more information about acedb and
    8 KB (936 words) - 16:48, 21 December 2011
  • WormBase-Caltech Weekly Calls August 2014
    ..."what are the main questions they are trying to answer when they go to the website?". When they explore a gene or protein function, what is it that they woul
    6 KB (974 words) - 17:28, 3 September 2014
  • WormBase-Caltech Weekly Calls December 2011
    *We want a paper on the new website to go to a broader audience
    6 KB (903 words) - 16:37, 5 January 2012
  • WormBase-Caltech Weekly Calls September 2014
    ...se (like Postgres now) may or may not be the same database that drives the website
    6 KB (857 words) - 16:01, 2 October 2014
  • WS193
    5. See the acedb website for more information about acedb and
    8 KB (944 words) - 16:52, 21 December 2011
  • WS174
    5. See the acedb website for more information about acedb and
    8 KB (938 words) - 10:54, 21 December 2011
  • General administration
    0,30 * * * * /usr/local/wormbase/website/production/util/crons/starman-reaper.pl 10 1,5,9,13,17,21 * * * /usr/local/wormbase/website-admin/maintenance/purge_acedb_logs.sh
    16 KB (2,589 words) - 20:19, 29 March 2012
  • WS217
    5. See the acedb website for more information about acedb and
    8 KB (915 words) - 11:10, 21 December 2011
  • WS226
    the new website architecture 5. See the acedb website for more information about acedb and
    21 KB (2,346 words) - 11:15, 21 December 2011
  • WormBase Newsletter No. 3, October 2003
    * Leon Avery, C. elegans neurobiologist; CGC website
    10 KB (1,509 words) - 15:40, 24 September 2007
  • WormBase Newsletter No. 2, February 2003
    * Leon Avery, C. elegans neurobiologist; CGC website
    7 KB (1,180 words) - 11:00, 21 December 2011
  • WormBase-Caltech Weekly Calls July 2011
    *Check on new Beta version of WormBase website
    7 KB (1,117 words) - 16:39, 4 August 2011
  • WormBase-Caltech Weekly Calls November 2012
    *Daily updates to website could be more satisfying for users
    7 KB (1,123 words) - 16:39, 6 December 2012
  • WormBase-Caltech Weekly Calls March 2015
    * Process chapter may not fill a chapter; also pending some website updates
    7 KB (1,058 words) - 15:32, 2 April 2015
  • TransgeneOme import
    The original data is always present on the Max Planck Institute (MPI) website. WormBase will fetch the data periodically (Release-basis) to have the coll
    11 KB (1,190 words) - 19:16, 26 September 2019
  • Wormmart administration
    bash> ./Configure -des -Dprefix=$HOME/website/perl/5.10.1
    8 KB (1,307 words) - 14:39, 4 November 2010
  • WormBase-Caltech Weekly Calls March 2014
    * Pad 0s in WBPerson objects. https://github.com/WormBase/website/issues/2522#issuecomment-38077230 * AMIGO2 now live on GO website
    8 KB (1,218 words) - 17:46, 2 April 2014
  • WormBase-Caltech Weekly Calls February 2015
    * Would be good to embed community annotation forms into WormBase website so that users could log in and add data without having to re-enter personal
    8 KB (1,120 words) - 16:19, 5 March 2015
  • WormBase-Caltech Weekly Calls July 2018
    ...accurate and/or public gene names in description inconsistent with current website display of public name
    7 KB (1,062 words) - 14:41, 2 August 2018
  • Model changes to capture and consolidate human disease data
    ...STful API service is also offered to users of the Disease Ontology browser website to allow for programmatic access to the metadata found in the database. ...offer all the services that are available on the Disease Ontology browser website through the REST API as well.
    32 KB (3,649 words) - 20:55, 21 May 2020
  • WormBase-Caltech Weekly Calls May 2017
    ...ocess will require changes in phases to allow migration of build steps and website display over to new model
    8 KB (1,229 words) - 15:31, 1 June 2017
  • Modeling data for Infectious agents
    ...ecies. So, simply adding the Strain name here should be sufficient for the website to display the taxonomic info. Maybe this is preferable to adding lots of n
    15 KB (1,892 words) - 19:54, 10 February 2017
  • WormBase-Caltech Weekly Calls May 2011
    *Still need to work out, but should wait until the new website has stabilized
    9 KB (1,302 words) - 16:38, 2 June 2011
  • WormBase-Caltech Weekly Calls July 2020
    ...n uploading to SimpleMine or WormMine, or sample searching in the WormBase website interface * https://github.com/WormBase/website/issues/7803
    9 KB (1,369 words) - 22:47, 5 August 2020
  • ISB2014 Session2 Systems Biology
    Pathway browser - framework for data integration and analysis in the website if you dont' want to use the website- download hte pathway
    31 KB (4,384 words) - 19:08, 11 April 2014
  • WormBase-Caltech Weekly Calls October 2017
    * We could also do more through the website
    10 KB (1,586 words) - 15:30, 2 November 2017
  • WormBase-Caltech Weekly Calls October 2015
    * Currently, large queries on website point users to FTP site, but without direction
    10 KB (1,475 words) - 16:57, 5 November 2015
  • WS228
    5. See the acedb website for more information about acedb and
    14 KB (1,572 words) - 10:37, 11 November 2011
  • WormBase-Caltech Weekly Calls January 2014
    *We want to workout a pipeline for widget/website modifications, proposals etc.
    10 KB (1,583 words) - 18:16, 5 February 2014
  • ISB2014 Stein
    output on website -> depth of data Reactome is a database of human pathway and processes accessible via a website, available as down- loads in standard reusable formats and via a RESTFUL AP
    37 KB (5,533 words) - 19:17, 11 April 2014
  • ISB2014 Session5 Data Integration and Sharing
    output on website -> depth of data Reactome is a database of human pathway and processes accessible via a website, available as down- loads in standard reusable formats and via a RESTFUL AP
    37 KB (5,533 words) - 19:17, 11 April 2014
  • WS225
    5. See the acedb website for more information about acedb and
    16 KB (1,674 words) - 11:38, 20 April 2011
  • WS223
    5. See the acedb website for more information about acedb and
    15 KB (1,610 words) - 11:20, 21 December 2011
  • WS234
    5. See the acedb website for more information about acedb and
    15 KB (1,653 words) - 10:13, 18 January 2013
  • WormBase-Caltech Weekly Calls April 2014
    ...ue with incorporating, for example, Mosci alleles and their display on the website * GitHub issue [https://github.com/WormBase/website/issues/2626]
    10 KB (1,474 words) - 15:54, 30 April 2014
  • WS224
    5. See the acedb website for more information about acedb and
    15 KB (1,583 words) - 11:13, 21 December 2011
  • Phenote Fields
    ...to acedb. We will need to request that these symbols are displayed on the website.
    12 KB (1,991 words) - 23:45, 14 February 2011
  • WS218
    5. See the acedb website for more information about acedb and
    15 KB (1,756 words) - 11:21, 21 December 2011
  • WormBase-Caltech Weekly Calls January 2015
    * Screenshots of WormBase.org website?
    10 KB (1,453 words) - 18:52, 4 February 2015
  • WS219
    5. See the acedb website for more information about acedb and
    15 KB (1,622 words) - 11:11, 21 December 2011
  • WS232
    5. See the acedb website for more information about acedb and
    15 KB (1,729 words) - 14:15, 13 September 2012
  • WormBase-Caltech Weekly Calls July 2015
    * Many authors want to share and make links to their database/website via WormBase
    10 KB (1,464 words) - 17:09, 13 August 2015
  • WS227
    5. See the acedb website for more information about acedb and
    15 KB (1,738 words) - 11:20, 21 December 2011
  • Missing PMIDs
    I have found a page on the crossref website that allows to retrieve doi numbers through bibliographical data.
    14 KB (2,344 words) - 23:02, 14 December 2011
  • WS235
    5. See the acedb website for more information about acedb and
    15 KB (1,708 words) - 10:14, 18 January 2013
  • WS284
    5. See the acedb website for more information about acedb and
    17 KB (1,841 words) - 21:54, 11 May 2023
  • WS231
    5. See the acedb website for more information about acedb and
    16 KB (1,820 words) - 14:15, 13 September 2012
  • WormBase-Caltech Weekly Calls January 2018
    I think they have a website where they invite other researchers to make suggestions about how to identi
    12 KB (1,930 words) - 17:12, 1 February 2018
  • WormBase-Caltech Weekly Calls August 2012
    *When an issue is submitted via the website, GitHub generates a unique e-mail which can be replied to. That e-mail thre
    12 KB (1,878 words) - 15:55, 6 September 2012
  • WormBase-Caltech Weekly Calls March 2018
    ** https://github.com/WormBase/website/issues/6044 ** https://github.com/WormBase/website/issues/6241
    11 KB (1,703 words) - 15:27, 5 April 2018
  • Release notes
    ...100px]]<span style="color:red"> THIS PAGE IS NOW MAINTAINED AS PART OF THE WEBSITE PROPER AT: [http://www.wormbase.org/about/release_schedule release_schedule
    29 KB (3,687 words) - 11:01, 10 May 2013
  • WS233
    5. See the acedb website for more information about acedb and
    17 KB (2,002 words) - 14:17, 13 September 2012
  • NGASP
    This is the website for '''nGASP''', the nematode genome annotation assessment project. It out
    21 KB (3,246 words) - 23:20, 13 August 2010
  • WS230
    5. See the acedb website for more information about acedb and
    17 KB (1,950 words) - 09:37, 7 February 2012
  • WS229
    5. See the acedb website for more information about acedb and
    17 KB (1,988 words) - 11:15, 21 December 2011
  • WormBase-Caltech Weekly Calls May 2018
    *[https://github.com/WormBase/website/issues/6423 Not sure if this falls under content....] ** Is Datomic migration complete? Not quite; the data on the website is served mostly by Datomic now, but we (Caltech curators) are still modeli
    14 KB (2,226 words) - 15:31, 7 June 2018
  • Release Schedule
    ...100px]]<span style="color:red"> THIS PAGE IS NOW MAINTAINED AS PART OF THE WEBSITE PROPER AT: [http://www.wormbase.org/about/release_schedule release_schedule
    46 KB (6,328 words) - 15:42, 28 March 2015
  • Working Group:Sequence Features
    * Display of Sequence Features on the website ** See github ticket 2867 https://github.com/WormBase/website/issues/2867#issuecomment-48041365
    23 KB (3,248 words) - 12:58, 22 September 2014
  • WS215
    5. See the acedb website for more information about acedb and
    19 KB (1,735 words) - 11:07, 21 December 2011
  • FAQs
    ...rticles are available directly from the [http://www.WormBook.org WormBook] website, the [http://dev.WormBook.org development] site, the [http://wormbook.sange There is a view available on the website that displays the ACeDB graphical display for the physical map.
    67 KB (10,954 words) - 09:22, 19 February 2013
  • Pictures
    /usr/local/wormbase/website-shared-file/html/img-static/movies ...the DOI. See this ticket for more information -https://github.com/WormBase/website/issues/9349.
    120 KB (19,719 words) - 16:44, 20 October 2023
  • Former How To Build A WormBase Mirror
    ...ic directives as needed. For instance, if WormBase is going to be the only website hosted by this server, then comment out all DocumentRoot and &lt;Directory& = Tweaking the website =
    60 KB (9,496 words) - 23:06, 13 August 2010
  • Tasks in Progress
    **[https://github.com/WormBase/website/issues/151 #151 - Very useful view for users, from the old site] **[https://github.com/WormBase/website/issues/135 #135 - Port the data model CGI to the new site]
    29 KB (4,254 words) - 20:25, 27 April 2012
  • Person
    ...number: two number of othername, and this is the data that will show in WB website. ...umping only one in acedb/citace, ergo showing only 1 in tree-display in WB website.
    119 KB (18,888 words) - 00:05, 2 May 2014
  • WormBase-Caltech Weekly Calls 2023
    ...n acedb vs internal comments in postgres, but neither on WBPerson pages on website.
    36 KB (4,994 words) - 17:27, 14 February 2024
  • Concise Descriptions
    ...riptions will be properly attributed to their authors and displayed on the website.
    47 KB (6,852 words) - 04:27, 8 December 2020
  • Molecule
    ...cept in the case of a Bank Holiday when it becomes the Tuesday). The ChEBI website is updated daily. ...needs to be manually edited on github in the [https://github.com/WormBase/website/blob/staging/root/templates/config/external_urls external_urls] file whenev
    50 KB (6,966 words) - 19:15, 13 August 2020
  • Mapped Transgenes
    == This data is now available on the with each release on the WormBase website==
    397 KB (64,724 words) - 09:57, 7 July 2020
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