WormBase Models
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Jump to navigationJump to searchThe A - Z of WormBase Models
Document created from WS218 models
No. | Class | Institute | Comment/Brief Description | Curator(s) |
---|---|---|---|---|
1 | 2_point_data | Sanger | ? | |
2 | 3d_data | ? | ? | |
3 | Accession_number | Sanger | ? | |
4 | Analysis | ? | This class is used along with ?Condition to store meta data about an experiment | |
5 | Anatomy_function | Caltech | ? | Raymond |
6 | Anatomy_name | Caltech | ? | Raymond |
7 | Anatomy_term | Caltech | ? | Raymond |
8 | Antibody | Caltech | ? | |
9 | AO_code | ? | ? | Raymond |
10 | Atlas | OICR | WORMBASE ATLAS (VIRTUAL WORM) | |
11 | Author | Caltech | ? | |
12 | Balancer | ? | ? | |
13 | CDS | Sanger | ? | Paul Davis + others |
14 | Cell | Sanger/Caltech? | ? | Raymond |
15 | Cell_group | Sanger/Caltech? | ? | Raymond |
16 | Clone | Sanger | ? | |
17 | Condition | ? | ? | |
18 | Contig | Sanger | ? | |
19 | Database | Sanger | ? | |
20 | Database_field | Sanger | ? | |
21 | Expression_cluster | Caltech | ? | |
22 | Expr_pattern | Caltech | ? | |
23 | Expr_profile | Caltech | ? | |
24 | Feature | Sanger | ? | Paul Davis Mary Anne |
25 | Feature_data | Sanger | ?Class of data used to mark up features on Transcript data | |
26 | Gene | Sanger | Envelope for collecting/connecting data pertaining to a single gene | Mary Ann |
27 | Gene_class | Sanger | Used for describing and grouping a family of genes | Mary Ann |
28 | Gene_cluster | Sanger | Used to denote a cluster of genes of a specific type - not maintained? | |
29 | Gene_name | Sanger | ? | |
30 | Gene_regulation | Caltech | ? | |
31 | Genetic_code | Sanger | Allows for alternate genetic codes for Mitocondria and selenocysteine. | |
32 | GO_code | Caltech | ? | |
33 | GO_term | Caltech | ? | |
34 | Grid | Sanger | ? | |
35 | Grid_data | Sanger | ? | |
36 | Grid_row | Sanger | ? | |
37 | Homol_data | Sanger | Used for storing alignment data | |
38 | Homology_group | Caltech | ? | |
39 | Interaction | Caltech | ? | |
40 | Interval_col_conf | ? | ? | |
41 | Jade | Acedb? | ? | |
42 | Lab_Location | Caltech | ? | |
43 | Laboratory | Caltech | ? | |
44 | Library | Sanger | libraries used for sequencing of nematode ESTs // Information to come from Mark Blaxters | |
45 | Life_stage | Caltech | ? | |
46 | Locus | Sanger | This class is a reminent that should be cleaned up. | |
47 | ManyMap | Sanger | ? | |
48 | Map | Sanger | ? | |
49 | Map_error | Sanger | ? | |
50 | Map_offset | Sanger | ? | |
51 | Map_position | Sanger | ? | |
52 | Mass_spec_experiment | Sanger | ? | Gary Williams |
53 | Mass_spec_peptide | Sanger | ? | Gary Williams |
54 | Method | ? | AceDB class that details display etc. of objects in the other classes | |
55 | Microarray | Caltech | ? | |
56 | Microarray_experiment | Caltech | ? | |
57 | Microarray_results | Caltech | ? | |
58 | Mixed_grid_row | Sanger | ? | |
59 | Molecule | Caltech | Used to capture molecules that influence gene activity and affect phenotypes. | Karen |
60 | Motif | Sanger | ? | |
61 | Movie | Caltech | ? | |
62 | Multi_counts | Sanger? | ? | |
63 | MultiMap | ? | Not used? | |
64 | Multi_pt_data | Sanger | ? | |
65 | Neurodata | ? | ?Not Used | Raymond |
66 | Neuro_location | ? | ? Not Used | Raymond |
67 | Oligo | ? | ? | |
68 | Oligo_set | ? | ? | |
69 | Operon | Sanger | Stores genes that are in Operons | Paul Davis |
70 | Paper | Caltech | ? | |
71 | PCR_product | ? | ? | |
72 | Person | Caltech | ? | Cecilia Nakamura |
73 | Person_name | Caltech | ? | |
74 | Phenotype | Caltech | ? | |
75 | Phenotype_Assay | Caltech | ? | |
76 | Phenotype_name | Caltech | ? | |
77 | Picture | Caltech | ? | |
78 | Position_Matrix | Caltech | ? | |
79 | Pos_neg_data | Sanger | ? | |
80 | Protein | Sanger | ? | |
81 | Pseudogene | Sanger | Stores the Pseudogene models | |
82 | Rearrangement | Caltech | ? | |
83 | ReconCellInfo | OICR | ? | |
84 | Reconstruction | OICR | ? | |
85 | Reference | Caltech | ? | |
86 | RNAi | Caltech | Stores information pertaining to RNAi experiments, including RNAi probe targets, resulting phenotypes, and associated papers. | Gary Schindleman, Chris Grove |
87 | SAGE_experiment | Sanger | ? | |
88 | SAGE_tag | Sanger | ? | |
89 | Sequence | Sanger | A broad class for storing genomic, Transcripts Sequence etc. | |
90 | SK_map | Caltech | ? | |
91 | SO_term | Caltech | ? | |
92 | Species | Sanger | ? | |
93 | Strain | Sanger | ? | |
94 | Structure_data | OICR | ? | |
95 | Timepoint | OICR | ? | |
96 | Transcript | Sanger | Stores RNAgenes and the Full length Coding_transcripts | |
97 | Transgene | Caltech | ? | |
98 | Transposon | Sanger | Stores the Transposon span and S_child info | Paul Davis |
99 | Transposon_family | Sanger | Used for grouping like ?Transposons | Paul Davis |
100 | Variation | Sanger | ? | Mary Ann |
101 | Variation_name | Sanger | ? | |
102 | YH | Caltech | ? |