WormBase Model:Feature
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Curator Comments/Description
Model
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//
// Feature class
//
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?Feature SMap S_parent UNIQUE Sequence UNIQUE ?Sequence XREF Feature_object
Name Public_name UNIQUE ?Text
Other_name ?Text
Flanking_sequences UNIQUE ?Sequence UNIQUE Text UNIQUE Text
DNA_text UNIQUE ?Text // for storing the sequence of the feature...can use IUPAC codes to be able
// store consensus sequences, e.g. binding site consensus sequence
Origin Species UNIQUE ?Species //added by pad, as we are moving towards multi species readyness.
History Merged_into UNIQUE ?Feature XREF Acquires_merge #Evidence
Acquires_merge ?Feature XREF Merged_into #Evidence
Deprecated Text #Evidence
Visible Description ?Text
SO_term ?SO_term XREF Feature
Defined_by Defined_by_sequence ?Sequence XREF Defines_feature #Evidence
Defined_by_paper ?Paper XREF Feature #Evidence
Defined_by_person ?Person
Defined_by_author ?Author
Defined_by_analysis ?Analysis
Associations Associated_with_gene ?Gene XREF Associated_feature #Evidence // richard
Associated_with_CDS ?CDS XREF Associated_feature #Evidence // richard
Associated_with_transcript ?Transcript XREF Associated_feature #Evidence // richard
Associated_with_pseudogene ?Pseudogene XREF Associated_feature #Evidence // richard
Associated_with_transposon ?Transposon XREF Associated_feature #Evidence //richard
Associated_with_variation ?Variation XREF Feature #Evidence
Associated_with_Position_Matrix ?Position_Matrix XREF Associated_feature #Evidence
Associated_with_operon ?Operon XREF Associated_feature #Evidence
Associated_with_gene_regulation ?Gene_regulation XREF Associated_feature #Evidence
Associated_with_expression_pattern ?Expr_pattern XREF Associated_feature #Evidence
Associated_with_Feature ?Feature XREF Associated_with_Feature #Evidence
Bound_by_product_of ?Gene XREF Gene_product_binds #Evidence //pad added this to show what gene it binds
Annotation UNIQUE ?LongText // added for data attribution [030220 dl]
Confidential_remark ?Text //pad
Remark ?Text #Evidence
Method UNIQUE ?Method
Proposed Changes
Unused tags
Public_name - This will be good for UTRome data/modENCODE data that has a "real" name on the modENCODE pages?
Defined_by_author - ?
Associated_with_transposon
Associated_with_Position_Matrix - unused and poss defunct? better connect the ?PM to the query substrate?
Annotation
