WormBase Model:Paper
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Curator Comments/Description
Model
// ?Paper class - krb 040223
// ?Paper class - krb 040223
// ID-based system (WBPaperXXXXXXXX) to allow paper tracking and an associated ?Paper_name class
//
////////////////////////////////////////////////////////////////////////////////////////////////////////
?Paper Original_timestamp Datetype // temporary tag in transition period [krb 040223]
Name ?Text //used for storing legacy names, like cgc5654 or wm95p426
DB_info Database ?Database ?Database_field ?Accession_number //used for storing PubMed or other database identifiers, for PubMed, Database_field would be PMID
History Merged_into UNIQUE ?Paper XREF Acquires_merge
Acquires_merge ?Paper XREF Merged_into
Status Valid
Invalid
Erratum_in ?Paper XREF Erratum_for
Erratum_for ?Paper XREF Erratum_in
Reference Title UNIQUE ?Text
Journal UNIQUE ?Text //we are cleaning up Journal names and considering retiring the class
Publisher UNIQUE Text
Editor ?Text //used for books put in as objects
Page UNIQUE Text
Volume UNIQUE Text
Publication_date UNIQUE ?Text //YYYY-MM-DD or YYYY-MM, replaces DateType which led to erroneous pub dates
Contained_in ?Paper XREF Contains // old form
Contains ?Paper XREF Contained_in
Author ?Author XREF Paper #Affiliation
Person ?Person XREF Paper #Evidence
Describes_analysis ?Analysis XREF Reference
Not_person ?Person XREF Not_Paper #Evidence
Affiliation Text // Authors' affiliation if available
Brief_citation UNIQUE Text
Abstract ?LongText
URL Text //will be used for Worm Breeder's Gazette articles and other citations available online but not through PubMed
Type Journal_article #Evidence
Review #Evidence
Comment #Evidence
News #Evidence
Letter #Evidence
Editorial #Evidence
Congresses #Evidence
Historical_article #Evidence
Biography #Evidence
Interview #Evidence
Lectures #Evidence
Interactive_tutorial #Evidence
Retracted_publication #Evidence
Technical_report #Evidence
Directory #Evidence
Monograph #Evidence
Published_erratum #Evidence
Meeting_abstract #Evidence
Gazette_article #Evidence
Book_chapter #Evidence
Book #Evidence
Email #Evidence
WormBook #Evidence
Other #Evidence
Refers_to Gene ?Gene XREF Reference #Evidence
Allele ?Variation XREF Reference #Evidence
Rearrangement ?Rearrangement XREF Reference #Evidence
Sequence ?Sequence XREF Reference #Evidence
CDS ?CDS XREF Reference #Evidence
Transcript ?Transcript XREF Reference #Evidence
Strain ?Strain XREF Reference #Evidence
Clone ?Clone XREF Reference #Evidence
Expr_pattern ?Expr_pattern XREF Reference #Evidence
Expr_profile ?Expr_profile XREF Reference #Evidence
Cell ?Cell XREF Reference #Evidence
Cell_group ?Cell_group XREF Reference #Evidence
Life_stage ?Life_stage XREF Reference #Evidence
RNAi ?RNAi XREF Reference #Evidence
Transgene ?Transgene XREF Reference #Evidence
Operon ?Operon XREF Reference #Evidence
Expression_cluster ?Expression_cluster XREF Reference #Evidence
Feature ?Feature XREF Defined_by_paper // added [030424 dl]
Gene_regulation ?Gene_regulation XREF Reference // added [030804 krb]
Microarray_experiment ?Microarray_experiment XREF Reference //added for Microarray_experiment model
Anatomy_term ?Anatomy_term XREF Reference #Evidence
Anatomy_function ?Anatomy_function XREF Reference
Antibody ?Antibody XREF Reference #Evidence // added [031120 krb]
SAGE_experiment ?SAGE_experiment XREF Reference
YH ?YH XREF Reference ?Text
Interaction ?Interaction XREF Paper
Mass_spec_experiment ?Mass_spec_experiment XREF Reference
Curation_pipeline Phenotype2GO
Keyword ?Keyword
Remark ?Text #Evidence
Proposed Changes
Unused tags
Original_timestamp
Type Directory
Type Email
Refers_to Operon
Refers_to Anatomy_term
