WormBase Model:Rearrangement
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Curator Comments/Description
Model
////////////////////////////////////////////////////////////////////////////////
//
// ?Rearrangement class
//
////////////////////////////////////////////////////////////////////////////////
?Rearrangement Evidence #Evidence
Name Other_name ?Text
Variation ?Variation XREF Rearrangement
Type Deletion
Duplication Free_dup
Translocation
Compound Text
Phenotype ?Phenotype XREF Rearrangement #Phenotype_info
Phenotype_not_observed ?Phenotype XREF Not_in_Rearrangement #Phenotype_info //added by Wen to separate Not phenotype from real phenotypes
Balances ?Map #Balancer
Marked By_variation ?Variation XREF Marked_rearrangement
By_transgene ?Transgene XREF Marked_rearrangement
By_other ?Text
// possibility to refer to other Intervals to describe a complex rearrangement
// for the worm this is not too necessary, but important for fly and mouse
// or perhaps there should be another class Complex_Rear that refers to
// several intervals.
Reference_strain ?Strain
Species UNIQUE ?Species
Remark ?Text #Evidence
Isolation Author ?Author // use Person where possible, else use Author
Person ?Person
Date DateType
Mutagen UNIQUE Text UNIQUE Text // Text is dose
Source_rearrangement ?Rearrangement XREF Derived_rearrangement
Derived_rearrangement ?Rearrangement XREF Source_rearrangement
Map ?Map XREF Rearrangement #Map_position
Positive Gene_inside ?Gene XREF Inside_rearr #Evidence
Locus_inside ?Locus XREF Inside_rearr ?Author
Clone_inside ?Clone XREF Inside_rearr ?Author
Rearr_inside ?Rearrangement
Negative Gene_outside ?Gene XREF Outside_rearr #Evidence
Locus_outside ?Locus XREF Outside_rearr ?Author
Clone_outside ?Clone XREF Outside_rearr ?Author
Rearr_outside ?Rearrangement
Mapping_data Pos_neg_data ?Pos_neg_data
2_point ?2_point_data
Multi_point ?Multi_pt_data
Display Hide_under UNIQUE ?Rearrangement XREF Hides
Hides ?Rearrangement // no XREF on purpose
Location ?Laboratory #Lab_Location
URL Text
Strain ?Strain XREF Rearrangement
Reference ?Paper XREF Rearrangement
Proposed Changes
Unused tags
Phenotype
By_other
Species
URL
