WormBase Model:Homology group
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Curator Comments/Description
Model
/////////////////////////////////////////////////////////////////////////////////
//
// ?Homology_group class - krb 031120
// Class to handle clusters of orthologus genes (COG) and other related data
//
/////////////////////////////////////////////////////////////////////////////////
?Homology_group Evidence #Evidence
Title ?Text
DB_info Database ?Database ?Database_field ?Accession_number XREF Homology_group
Group_type UNIQUE COG COG_type KOG
TWOG
FOG
LSE
COG_code #COG_codes
HOPS_group // Sonnhammer
RIO_group // Eddy
InParanoid_group
OrthoMCL_group //erich Nov06
GO_term ?GO_term XREF Homology_group
Protein ?Protein XREF Homology_group
Remark ?Text #Evidence
Proposed Changes
?Homology_group Evidence #Evidence
Title ?Text
DB_info Database ?Database ?Database_field ?Accession_number XREF Homology_group
Group_type UNIQUE COG COG_type #Homology_type
COG_code #COG_codes
eggNOG eggNOG_type #Homology_type
eggNOG_code #COG_codes
InParanoid_group
OrthoMCL_group //erich Nov06
GO_term ?GO_term XREF Homology_group
Protein ?Protein XREF Homology_group
Remark ?Text #Evidence
#Homology_type KOG
TWOG
FOG
LSE
NOG //eggNOG - standard cluster
euNOG //eggNOG - eukaryote cluster
meNOG //eggNOG - metazoan cluster
And I want to remove the HOPS and RIO tags
Unused tags
Evidence
DB_info Database
Group_type HOPS_group
RIO_group
GO_term
Remark
