WormBase Model:Homology group

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WormBase Models

Curator Comments/Description

Model

/////////////////////////////////////////////////////////////////////////////////
//
// ?Homology_group class - krb 031120
// Class to handle clusters of orthologus genes (COG) and other related data
//
/////////////////////////////////////////////////////////////////////////////////


?Homology_group Evidence #Evidence
                Title ?Text
                DB_info Database ?Database ?Database_field ?Accession_number XREF Homology_group
                Group_type  UNIQUE COG  COG_type KOG
                                                 TWOG
                                                 FOG
                                                 LSE
                                        COG_code #COG_codes
                                   HOPS_group    // Sonnhammer
                                   RIO_group     // Eddy
                                   InParanoid_group
                                   OrthoMCL_group     //erich Nov06
                GO_term ?GO_term XREF Homology_group
                Protein ?Protein XREF Homology_group
                Remark ?Text #Evidence

Proposed Changes

?Homology_group Evidence #Evidence
              Title ?Text
              DB_info Database ?Database ?Database_field ?Accession_number XREF Homology_group
              Group_type  UNIQUE COG    COG_type #Homology_type
                                        COG_code #COG_codes
                                 eggNOG eggNOG_type #Homology_type
                                        eggNOG_code #COG_codes
              InParanoid_group
              OrthoMCL_group     //erich Nov06
              GO_term ?GO_term XREF Homology_group
              Protein ?Protein XREF Homology_group
              Remark ?Text #Evidence
#Homology_type KOG
              TWOG
              FOG
              LSE
              NOG   //eggNOG - standard cluster
              euNOG //eggNOG - eukaryote cluster
              meNOG //eggNOG - metazoan cluster

And I want to remove the HOPS and RIO tags

Unused tags

Evidence
DB_info Database
Group_type HOPS_group
           RIO_group
GO_term
Remark