WormBase Model:Phenotype

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WormBase Models

Curator Comments/Description

Model

///////////////////////////////////////////////
// ?Phenotype class
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?Phenotype Description UNIQUE ?Text     #Evidence
           Name        Primary_name     UNIQUE  ?Phenotype_name XREF Primary_name_for   #Evidence
                       Synonym          ?Phenotype_name XREF Synonym_for        #Evidence
                       Short_name       ?Phenotype_name XREF Short_name_for     #Evidence
           Assay UNIQUE ?Text #Evidence
           Remark ?Text #Evidence
           Related_phenotypes Specialisation_of ?Phenotype XREF Generalisation_of
                              Generalisation_of ?Phenotype XREF Specialisation_of
                              Dead Alternate_phenotype ?Phenotype
           Attribute_of       RNAi      ?RNAi XREF Phenotype
                              Variation ?Variation XREF Phenotype
                              Transgene ?Transgene XREF Phenotype       // Added by Carol
                              Anatomy_function ?Anatomy_function XREF Phenotype
                              Interaction ?Interaction
                              Rearrangement ?Rearrangement XREF Phenotype
                              Strain ?Strain XREF Phenotype
                              Not_in_RNAi ?RNAi XREF Phenotype_not_observed //added by Wen for Not observed phenotypes
                              Not_in_Variation ?Variation XREF Phenotype_not_observed //added by Wen for Not observed phenotypes
                              Not_in_Strain ?Strain XREF Phenotype_not_observed //added by Wen for Not observed phenotypes
                              Not_in_Transgene ?Transgene XREF Phenotype_not_observed //added by Wen for Not observed phenotypes
                              Not_in_Rearrangement ?Rearrangement XREF Phenotype_not_observed //added by Wen for Not observed phenotypes
           Associated_with    GO_term   ?GO_term   XREF Phenotype   ?GO_code  #Evidence // Tag Associated_with changed by Carol

Proposed Changes

Unused tags

Alternate_phenotype

Rearrangement