WormBase Model:SAGE tag
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Curator Comments/Description
Model
?SAGE_tag Evidence #Evidence
Homol Homol_homol ?Homol_data XREF SAGE_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info
Tag_sequence UNIQUE Text //tag sequence including the restriction site
Anchoring_enzyme UNIQUE ?Motif //NlaIII most commonly
Tag_length UNIQUE Int //14 most commonly
Most_three_prime // added for tags which are the most 3' in a transcript
Unambiguously_mapped //boolean; describes whether tag is unambiguously mapped to one SAGE transcript or to splice isoforms of the same gene at the same genomic location
Corresponds_to Predicted_CDS ?CDS XREF SAGE_tag #SAGE_mapping_info
Gene ?Gene XREF SAGE_tag #SAGE_mapping_info
Transcript ?Transcript XREF SAGE_tag #SAGE_mapping_info
Pseudogene ?Pseudogene XREF SAGE_tag #SAGE_mapping_info
Results ?SAGE_experiment UNIQUE #SAGE_data //contains SAGE data for all experiments using the tag
Remark ?Text #Evidence
Method UNIQUE ?Method //for GFF dumping
Proposed Changes
Evidence Remark Predicted_CDS
