WormBase Model:Clone
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Curator Comments/Description
Model
////////////////////////////////////////////////////////////////////////////////
// ?Clone class
////////////////////////////////////////////////////////////////////////////////
?Clone Evidence #Evidence
Remark General_remark ?Text
Y_remark ?Text
PCR_remark ?Text
Position Map ?Map XREF Clone #Map_position
pMap UNIQUE ?Contig XREF Clone UNIQUE Int UNIQUE Int
// pMap units are bands
Clone_left_end ?Sequence // filled by XREF
Clone_right_end ?Sequence // filled by XREF
Pos_neg_data ?Pos_neg_data
Positive Positive_gene ?Gene XREF Positive_clone
Positive_variation ?Variation XREF Positive_clone ?Author
Inside_rearr ?Rearrangement XREF Clone_inside ?Author
Hybridizes_to ?Clone XREF Positive_probe ?Grid
Hybridizes_weak ?Clone XREF Pos_probe_weak ?Grid
Positive_probe ?Clone XREF Hybridizes_to ?Grid
Pos_probe_weak ?Clone XREF Hybridizes_weak ?Grid
Negative Negative_gene ?Gene XREF Negative_clone
Negative_locus ?Locus XREF Negative_clone ?Author
Outside_rearr ?Rearrangement XREF Clone_outside ?Author
Negative_probe ?Clone XREF Does_not_hybridize_to ?Grid
Does_not_hybridize_to ?Clone XREF Negative_probe ?Grid
In_strain ?Strain XREF Clone
Sequence ?Sequence XREF Clone
PCR_product ?PCR_product XREF Clone
Length Seq_length UNIQUE Int // bp
Gel_length UNIQUE Float // Kb
Location ?Laboratory #Lab_Location
URL Text // to link to MRC_geneservice website ar2
Gridded ?Grid
Grid_data ?Grid_data
FingerPrint Gel_Number UNIQUE Int
Approximate_Match_to UNIQUE ?Clone XREF Canonical_for
Exact_Match_to UNIQUE ?Clone XREF Canonical_for
Funny_Match_to UNIQUE ?Clone XREF Canonical_for
Canonical_for ?Clone UNIQUE Int UNIQUE Int
// start and stop offsets from self start
Bands UNIQUE Int UNIQUE Int
Gel ?Motif #Lane // Magic tag2 construct
Contig9 Chromosome UNIQUE ?Map
Vaxmap UNIQUE Float
In_Situ UNIQUE Int UNIQUE Int // percent of physical chromosome
Cosmid_grid
Canon_for_cosmid
Flag UNIQUE Int
Autopos
Expression_construct Pattern ?Text // archaic
Reference ?Paper XREF Clone
cDNA_group Contains ?Clone XREF Contains Text
Contained_in ?Clone XREF Contained_in
Best_match UNIQUE ?Text
Expr_pattern ?Expr_pattern XREF Clone
Sequence_status Shotgun UNIQUE DateType
Finished UNIQUE DateType
Accession_number UNIQUE Text
DB_info Database ?Database ?Database_field UNIQUE ?Accession_number XREF Clone // added [031120 krb]
Type UNIQUE Cosmid // 000824 Lincoln's additions to segregate clones
Fosmid // added 06/12/01 by krb for dl
YAC
cDNA
Plasmid
Other Text // added to catch all clones 011017 dl
Transgene ?Transgene XREF Clone
Derived_from ?Clone
Proposed Changes
unused tags
Evidence
Negative_locus
Negative_probe
Does_not_hybridize_to
Seq_length
URL
Grid_data
Gel
Expression_construct
Pattern
Contained_in
