WormBase Model:Motif

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WormBase Models

Curator Comments/Description

Model

?Motif  Match_sequence  UNIQUE Text     // Text is the DNA or protein sequence
        Num_mismatch UNIQUE Int         // Allowed number of mismatches when matching
                                        // (default 0)
        Restriction     Isoschizomer ?Motif XREF Isoschizomer
                        Offset UNIQUE Int   
                        Cleavage UNIQUE Text  // will show the cleavage points ex: G_ACGT'C
                        Overhang UNIQUE Int
                        Company UNIQUE Text
                        Redundant
        Remark ?Text #Evidence
        Title ?Text
        DB_info Database ?Database ?Database_field UNIQUE ?Accession_number XREF Motif // ID  Accession_number
                DB_remark ?Text #Evidence
                DB_text ?LongText
                Web_location ?WWW_server
        Substrate UNIQUE DNA
                         Peptide
        Homol   DNA_homol ?Sequence XREF Motif_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info
                Pep_homol ?Protein XREF Motif_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info
                Motif_homol ?Motif XREF Motif_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info
                Homol_homol ?Homol_data XREF Motif_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info
        GO_term ?GO_term XREF Motif ?GO_code #Evidence
        Associated_transposon_family ?Transposon_family XREF Associated_motif   // to connect Transposon famillies to Repeat motifs ar2 02-DEC-05

Proposed Changes

Unused tags

Num_mismatch

Redundant

DB_remark

DB_text

Web_location

Peptide

Motif_homol