WormBase Model:Anatomy term
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Curator Comments/Description
Model
///////////////////////////////////////////////////////////////////////
//
// ?Anatomy_term class
//
// a model to store cell and anatomy ontology terms and relationships
// ?Anatomy_term object names should be in the form of WBca:1234567
//
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?Anatomy_term Evidence #Evidence
Version UNIQUE Int UNIQUE Int
Definition UNIQUE ?Text #Evidence
Term UNIQUE ?Anatomy_name XREF Name_for_anatomy_term #Evidence
Synonym ?Anatomy_name XREF Synonym_for_anatomy_term #Evidence
Legacy Cell ?Cell XREF Anatomy_term
Embryo_division_time Text
Fate Cell_type ?Text // e.g. muscle, neuron,hypodermis, gland
Program ?Text //division, differentiation, death, and differs between sexes
Syncitial_cell ?Anatomy_term XREF Nucleus //see Cell_group,
Lineage Parent_term UNIQUE ?Anatomy_term XREF Daughter_term
Daughter_term ?Anatomy_term XREF Parent_term
Lineage_name Text
Equivalence_fate ?Anatomy_term XREF Equivalence_origin
Equivalence_origin ?Anatomy_term XREF Equivalence_fate
Sex_dimorphism Herm_origin ?Anatomy_term XREF Herm_fate // Added according to Sylvia 5/06/2000
Herm_fate ?Anatomy_term XREF Herm_origin
Male_origin ?Anatomy_term XREF Male_fate
Male_fate ?Anatomy_term XREF Male_origin
Life_stage ?Life_stage XREF Anatomy_term
Tree_Node ?TreeNode XREF Anatomy_term
Cell_group ?Cell_group XREF Anatomy_term
Contains Cell_term ?Anatomy_term XREF Sub_group
Nucleus ?Anatomy_term XREF Syncitial_cell //for syncitia like hyp7
Sub_group ?Anatomy_term XREF Contained_in
Contained_in ?Anatomy_term XREF Sub_group
Reconstruction ?Reconstruction XREF Anatomy_term #ReconCellInfo
Neurodata ?Anatomy_term #Neurodata
Link_diagram Text
Database ?Database ?Database_field ?Accession_number
URL Text // for storing static URLs, such as WormAtlas, WormBook
Child PART_OF_c ?Anatomy_term XREF PART_OF_p
IS_A_c ?Anatomy_term XREF IS_A_p
DESCENDENT_OF_c ?Anatomy_term XREF DESCENDENT_OF_p
DESC_IN_HERM_c ?Anatomy_term XREF DESC_IN_HERM_p
DESC_IN_MALE_c ?Anatomy_term XREF DESC_IN_MALE_p
DEVELOPS_FROM_c ?Anatomy_term XREF DEVELOPS_FROM_p
Parent PART_OF_p ?Anatomy_term XREF PART_OF_c
IS_A_p ?Anatomy_term XREF IS_A_c
DESCENDENT_OF_p ?Anatomy_term XREF DESCENDENT_OF_c
DESC_IN_HERM_p ?Anatomy_term XREF DESC_IN_HERM_c
DESC_IN_MALE_p ?Anatomy_term XREF DESC_IN_MALE_c
DEVELOPS_FROM_p ?Anatomy_term XREF DEVELOPS_FROM_c
Attribute_of Expr_pattern ?Expr_pattern XREF Anatomy_term
Expression_cluster ?Expression_cluster XREF Anatomy_term #Evidence
GO_term ?GO_term XREF Anatomy_term ?AO_code #Evidence
Reference ?Paper XREF Anatomy_term
Function Anatomy_function ?Anatomy_function XREF Involved
Anatomy_function_not ?Anatomy_function XREF Not_involved
Attribute_index Expr_ancestor ?Expr_pattern //attribute assigned to broader terms
Expr_descendent ?Expr_pattern
GO_ancestor ?GO_term //attribute assigned to narrower terms
GO_descendent ?GO_term
Index Ancestor ?Anatomy_term XREF Descendent //store ancestors of relationship IS_A and PART_OF
Descendent ?Anatomy_term XREF Ancestor //store descendents of relationship IS_A and PART_OF
Remark ?Text #Evidence
Proposed Changes
unused tags
Evidence
Version
Reference
