WormBase Model:Locus
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Curator Comments/Description
This is what's left over from the splitting of the class into CDS Pseudogene Transcript
Needs a good cleanup and probably the removal of this class.
Model
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//
// ?Locus class - krb Feb 2004
// slimmed down Locus class will initially just store Polymorphisms and gene clusters.
//
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?Locus Evidence #Evidence
Name Other_name ?Gene_name #Evidence // unidirectional link
Species UNIQUE ?Species // added by krb 15/02/02
Type Polymorphism SNP Text // Todd [171001 krb]
Status Text
SNP_assay ?PCR_product XREF SNP_locus ?Text
RFLP Text
Transposon_insertion Text
Detection_method Text
Map UNIQUE ?Map XREF Locus #Map_position
Positive Inside_rearr ?Rearrangement XREF Locus_inside ?Author
Negative Outside_rearr ?Rearrangement XREF Locus_outside ?Author
Negative_clone ?Clone XREF Negative_locus ?Author
Mapping_data Well_ordered // "on the line"
2_point ?2_point_data
Multi_point ?Multi_pt_data
Pos_neg_data ?Pos_neg_data
// Allele ?Variation XREF Locus #Evidence // just for SNPs for now
Laboratory ?Laboratory
Remark ?Text #Evidence
Proposed Changes
Unused Tags
Evidence
Name Other_name
Species
Type Polymorphism
Type SNP
Type Status
Type SNP_assay
Type RFLP
Type Transposon_insertion
Type Detection_method
Negative_clone
Mapping_data Well_ordered
Laboratory
Remark
