WormBase Model:Expression cluster

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WormBase Models

Curator Comments/Description


// ?Expression_cluster class
// For microarray data clustering results.

?Expression_cluster  Description  ?Text // refers to Biological meaning of this cluster group
                     Algorithm    Text  // refers to the algorithm that was used to get this clustering result.
                     Reference    ?Paper XREF Expression_cluster //reference of the experiment
                     Microarray_results ?Microarray_results  Text #Evidence  //refers to all experimental results included in the cluster.
                     SAGE_tag ?SAGE_tag Text #Evidence //this is for clustering results concluded from SAGE experiment
                     Gene ?Gene XREF Expression_cluster #Evidence           //Igor: populated during build based on Microarray_results mapping. Wen: sometimes entered directly when no microarray spot IDs were provided by the authors. 
                     Expr_pattern       ?Expr_pattern XREF Expression_cluster #Evidence //Wen: for clustering results concluded from Localizome
                     Remark ?Text #Evidence //for any other comments   
                     Anatomy_term ?Anatomy_term XREF Expression_cluster #Evidence //Describes microarray experiments involving expression profiling in a particular tissue or cell Igor Dec 06

Proposed Changes

unused tags

SAGE_tag - can be removed.

Expr_pattern - this is actually used by one paper regarding Localizome.