WormBase Model:Antibody

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WormBase Models

Curator Comments/Description

Model

/////////////////////////////////////////////////////////////////////////////////////////////
//
//  Antibody model
//
// Summary records the whole description extracted from paper
// Other_name holds the antibody's name appeared in the paper, such as MH27
// XREF from ?Antibody to ?CDS class will be added after ?CDS is integrated 
// into models.wrm and gets stable.
//
// added by krb 031120
//
// Well defined antibodies will be full populated with Isolation data.  Ambigous anibodies
// will be connected to what it is believed to be by the Possible_pseudonym(_of) pair of tags
// No connection to CDS is required - just Gene is fine
//
/////////////////////////////////////////////////////////////////////////////////////////////

?Antibody Summary ?Text #Evidence  //Summary of the antibody
          Other_name Text //for synonyms of the antibody
          Gene ?Gene XREF Antibody //Antigen gene
          Isolation Original_publication UNIQUE ?Paper //original publication of the antibody.
                    No_original_reference    Text //for antibody without reference
                    Person ?Person //person who created the antibody
                    Location ?Laboratory //Lab that created the antibody
                    Clonality UNIQUE Polyclonal Text //indicate if the Ab is polyclonal or monoclonal
                                     Monoclonal Text
                    Antigen UNIQUE Peptide Text //if the Ab is created with peptide. 
                                   Protein Text //if the Ab is created with protein. 
                                   Other_antigen Text //if the Ab is created with isolated tissue or anything else. 
                    Animal UNIQUE Rabbit //The following tags indicate the animal that was used to generate the antiserum
                                  Mouse
                                  Rat
                                  Guinea_pig
                                  Chicken
                                  Goat
                                  Other_animal Text
          Possible_pseudonym ?Antibody XREF Possible_pseudonym_of //this antibody may be the same as another antibody in WormBase
          Possible_pseudonym_of ?Antibody XREF Possible_pseudonym //this antibody may be the same as another antibody in WormBase
          Expr_pattern ?Expr_pattern XREF Antibody_info //This antibody is used for expression pattern analysis
          Gene_regulation ?Gene_regulation XREF Antibody_info //This antibody is used to study expression pattern change in mutants or under treatments
          Reference ?Paper XREF Antibody //All papers that ever refer to this antibody
          Remark ?Text #Evidence  //Other information related to the antibody.

Proposed Changes

Person