WormBase Model:Pseudogene
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Contents |
Curator Comments/Description
Model
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// ?Pseudogene - krb 030801
//
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?Pseudogene Evidence #Evidence
SMap S_parent UNIQUE Sequence UNIQUE ?Sequence XREF Pseudogene
Transposon UNIQUE ?Transposon XREF Pseudogene_child
Structure Source_exons Int UNIQUE Int
DB_info DB_remark ?Text #Evidence
Database ?Database ?Database_field UNIQUE ?Accession_number XREF Pseudogene
Origin From_laboratory UNIQUE ?Laboratory
Species UNIQUE ?Species
Type UNIQUE Coding_pseudogene #Evidence
RNA_pseudogene #Evidence
Transposon_pseudogene #Evidence
Attributes Transcribed #Evidence
Fragment #Evidence
Properties Isoform #Evidence
Visible Gene UNIQUE ?Gene XREF Corresponding_pseudogene // when Pseudogene is live
Gene_history UNIQUE ?Gene XREF Corresponding_pseudogene_history // when Pseudogene is dead
Matching_cDNA ?Sequence XREF Matching_pseudogene #Evidence
Brief_identification UNIQUE ?Text #Evidence
Corresponding_PCR_product ?PCR_product XREF Overlaps_pseudogene
Corresponding_oligo_set ?Oligo_set XREF Overlaps_pseudogene
RNAi_result ?RNAi XREF Pseudogene
Variation ?Variation XREF Pseudogene // for completeness of variation connecting to all gene types
Expr_pattern ?Expr_pattern XREF Pseudogene
Provisional_description ?Text #Evidence
Detailed_description ?Text #Evidence
Concise_description ?Text #Evidence
GO_term ?GO_term XREF Pseudogene ?GO_code #Evidence
SAGE_tag ?SAGE_tag XREF Pseudogene #SAGE_mapping_info
Microarray_results ?Microarray_results XREF Pseudogene //added for Microarray_results
Remark ?Text #Evidence
Associated_feature ?Feature XREF Associated_with_pseudogene #Evidence
Confidential_remark ?Text
Method UNIQUE ?Method
Proposed Changes
Tags not used
Provisional_description
Detailed_description
Concise_description
GO_term
