WormBase Model:Pseudogene

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WormBase Models

Curator Comments/Description

Model


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// ?Pseudogene - krb 030801
//
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?Pseudogene     Evidence #Evidence
                SMap S_parent UNIQUE Sequence UNIQUE ?Sequence XREF Pseudogene
                                     Transposon UNIQUE ?Transposon XREF Pseudogene_child    
                Structure Source_exons Int UNIQUE Int
                DB_info DB_remark ?Text #Evidence
                        Database ?Database ?Database_field UNIQUE ?Accession_number XREF Pseudogene
                Origin  From_laboratory UNIQUE ?Laboratory
                        Species UNIQUE ?Species
                Type    UNIQUE Coding_pseudogene #Evidence
                               RNA_pseudogene #Evidence
                               Transposon_pseudogene #Evidence
                Attributes   Transcribed #Evidence
                             Fragment #Evidence 
                Properties Isoform #Evidence
                Visible Gene         UNIQUE ?Gene XREF Corresponding_pseudogene         // when Pseudogene is live
                        Gene_history UNIQUE ?Gene XREF Corresponding_pseudogene_history // when Pseudogene is dead
                        Matching_cDNA ?Sequence XREF Matching_pseudogene #Evidence
                        Brief_identification UNIQUE ?Text #Evidence
                        Corresponding_PCR_product ?PCR_product XREF Overlaps_pseudogene 
                        Corresponding_oligo_set ?Oligo_set XREF Overlaps_pseudogene
                        RNAi_result ?RNAi XREF Pseudogene
                        Variation ?Variation XREF Pseudogene // for completeness of variation connecting to all gene types
                        Expr_pattern ?Expr_pattern XREF Pseudogene
                        Provisional_description ?Text #Evidence
                        Detailed_description ?Text #Evidence
                        Concise_description ?Text #Evidence
                        GO_term ?GO_term XREF Pseudogene ?GO_code #Evidence
                        SAGE_tag ?SAGE_tag XREF Pseudogene #SAGE_mapping_info
                        Microarray_results ?Microarray_results XREF Pseudogene  //added for Microarray_results
                        Remark ?Text #Evidence    
                Associated_feature ?Feature XREF Associated_with_pseudogene #Evidence
                Confidential_remark ?Text
                Method UNIQUE ?Method

Proposed Changes

Tags not used

Provisional_description

Detailed_description

Concise_description

GO_term