Difference between revisions of "WormBase Models"
From WormBaseWiki
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| [[User:Pdavis|Paul Davis]] Mary Anne | | [[User:Pdavis|Paul Davis]] Mary Anne | ||
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| ?Class of data used to mark up features on Transcript data | | ?Class of data used to mark up features on Transcript data | ||
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| Envelope for collecting/connecting data pertaining to a single gene | | Envelope for collecting/connecting data pertaining to a single gene | ||
| Mary Ann | | Mary Ann | ||
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| Used for describing and grouping a family of genes | | Used for describing and grouping a family of genes | ||
| Mary Ann | | Mary Ann | ||
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| Used to denote a cluster of genes of a specific type - not maintained? | | Used to denote a cluster of genes of a specific type - not maintained? | ||
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| Sanger | | Sanger | ||
| Allows for alternate genetic codes for Mitocondria and selenocysteine. | | Allows for alternate genetic codes for Mitocondria and selenocysteine. | ||
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| libraries used for sequencing of nematode ESTs // Information to come from Mark Blaxters | | libraries used for sequencing of nematode ESTs // Information to come from Mark Blaxters | ||
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| This class is a reminent that should be cleaned up. | | This class is a reminent that should be cleaned up. | ||
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| AceDB class that details display etc. of objects in the other classes | | AceDB class that details display etc. of objects in the other classes | ||
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| Used to capture molecules that influence gene activity and affect phenotypes. | | Used to capture molecules that influence gene activity and affect phenotypes. | ||
| [[User=kyook|Karen]] | | [[User=kyook|Karen]] | ||
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|[[User:raymond|Raymond]] | |[[User:raymond|Raymond]] | ||
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|[[User:raymond|Raymond]] | |[[User:raymond|Raymond]] | ||
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| Stores genes that are in Operons | | Stores genes that are in Operons | ||
| [[User:Pdavis|Paul Davis]] | | [[User:Pdavis|Paul Davis]] | ||
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| Cecilia Nakamura | | Cecilia Nakamura | ||
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| Stores the Pseudogene models | | Stores the Pseudogene models | ||
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| OICR | | OICR | ||
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| OICR | | OICR | ||
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| Stores information pertaining to RNAi experiments, including RNAi probe targets, resulting phenotypes, and associated papers. | | Stores information pertaining to RNAi experiments, including RNAi probe targets, resulting phenotypes, and associated papers. | ||
| Gary Schindleman, [[User:Cgrove|Chris Grove]] | | Gary Schindleman, [[User:Cgrove|Chris Grove]] | ||
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| A broad class for storing genomic, Transcripts Sequence etc. | | A broad class for storing genomic, Transcripts Sequence etc. | ||
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| OICR | | OICR | ||
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| Sanger | | Sanger | ||
| Stores RNAgenes and the Full length Coding_transcripts | | Stores RNAgenes and the Full length Coding_transcripts | ||
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| Stores the Transposon span and S_child info | | Stores the Transposon span and S_child info | ||
| [[User:Pdavis|Paul Davis]] | | [[User:Pdavis|Paul Davis]] | ||
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| Used for grouping like ?Transposons | | Used for grouping like ?Transposons | ||
| [[User:Pdavis|Paul Davis]] | | [[User:Pdavis|Paul Davis]] | ||
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Revision as of 15:50, 9 August 2010
The A - Z of WormBase Models
Document created from WS218 models
No. | Class | Institute | Comment/Brief Description | Curator(s) | Model copied |
---|---|---|---|---|---|
1 | 2_point_data | Sanger | ? | ||
2 | 3d_data | ? | ? | ||
3 | Accession_number | Sanger | ? | ||
4 | Analysis | ? | This class is used along with ?Condition to store meta data about an experiment | ||
5 | Anatomy_function | Caltech | ? | Raymond | |
6 | Anatomy_name | Caltech | ? | Raymond | |
7 | Anatomy_term | Caltech | ? | Raymond | |
8 | Antibody | Caltech | ? | ||
9 | AO_code | ? | ? | Raymond | |
10 | Atlas | OICR | WORMBASE ATLAS (VIRTUAL WORM) | ||
11 | Author | Caltech | ? | ||
12 | Balancer | ? | ? | ||
13 | CDS | Sanger | ? | Paul Davis + others | Done |
14 | Cell | Sanger/Caltech? | ? | Raymond | |
15 | Cell_group | Sanger/Caltech? | ? | Raymond | |
16 | Clone | Sanger | ? | ||
17 | Condition | ? | ? | Wen Chen | |
18 | Contig | Sanger | ? | ||
19 | Database | Sanger | ? | ||
20 | Database_field | Sanger | ? | ||
21 | Expression_cluster | Caltech | ? | Wen Chen | |
22 | Expr_pattern | Caltech | ? | Wen Chen | |
23 | Expr_profile | Caltech | ? | ||
24 | Feature | Sanger | ? | Paul Davis Mary Anne | |
25 | Feature_data | Sanger | ?Class of data used to mark up features on Transcript data | ||
26 | Gene | Sanger | Envelope for collecting/connecting data pertaining to a single gene | Mary Ann | |
27 | Gene_class | Sanger | Used for describing and grouping a family of genes | Mary Ann | |
28 | Gene_cluster | Sanger | Used to denote a cluster of genes of a specific type - not maintained? | ||
29 | Gene_name | Sanger | ? | ||
30 | Gene_regulation | Caltech | ? | ||
31 | Genetic_code | Sanger | Allows for alternate genetic codes for Mitocondria and selenocysteine. | ||
32 | GO_code | Caltech | ? | ||
33 | GO_term | Caltech | ? | ||
34 | Grid | Sanger | ? | ||
35 | Grid_data | Sanger | ? | ||
36 | Grid_row | Sanger | ? | ||
37 | Homol_data | Sanger | Used for storing alignment data | ||
38 | Homology_group | Caltech | ? | ||
39 | Interaction | Caltech | ? | ||
40 | Interval_col_conf | ? | ? | ||
41 | Jade | Acedb? | ? | ||
42 | Lab_Location | Caltech | ? | ||
43 | Laboratory | Caltech | ? | ||
44 | Library | Sanger | libraries used for sequencing of nematode ESTs // Information to come from Mark Blaxters | ||
45 | Life_stage | Caltech | ? | Wen Chen | |
46 | Locus | Sanger | This class is a reminent that should be cleaned up. | ||
47 | ManyMap | Sanger | ? | ||
48 | Map | Sanger | ? | ||
49 | Map_error | Sanger | ? | ||
50 | Map_offset | Sanger | ? | ||
51 | Map_position | Sanger | ? | ||
52 | Mass_spec_experiment | Sanger | ? | Gary Williams | |
53 | Mass_spec_peptide | Sanger | ? | Gary Williams | |
54 | Method | ? | AceDB class that details display etc. of objects in the other classes | ||
55 | Microarray | Caltech | ? | Wen Chen | |
56 | Microarray_experiment | Caltech | ? | Wen Chen | |
57 | Microarray_results | Caltech | ? | Wen Chen | |
58 | Mixed_grid_row | Sanger | ? | ||
59 | Molecule | Caltech | Used to capture molecules that influence gene activity and affect phenotypes. | Karen | |
60 | Motif | Sanger | ? | ||
61 | Movie | Caltech | ? | ||
62 | Multi_counts | Sanger? | ? | ||
63 | MultiMap | ? | Not used? | ||
64 | Multi_pt_data | Sanger | ? | ||
65 | Neurodata | ? | ?Not Used | Raymond | |
66 | Neuro_location | ? | ? Not Used | Raymond | |
67 | Oligo | ? | ? | ||
68 | Oligo_set | ? | ? | ||
69 | Operon | Sanger | Stores genes that are in Operons | Paul Davis | |
70 | Paper | Caltech | ? | ||
71 | PCR_product | ? | ? | ||
72 | Person | Caltech | ? | Cecilia Nakamura | |
73 | Person_name | Caltech | ? | ||
74 | Phenotype | Caltech | ? | ||
75 | Phenotype_Assay | Caltech | ? | ||
76 | Phenotype_name | Caltech | ? | ||
77 | Picture | Caltech | ? | ||
78 | Position_Matrix | Caltech | ? | ||
79 | Pos_neg_data | Sanger | ? | ||
80 | Protein | Sanger | ? | ||
81 | Pseudogene | Sanger | Stores the Pseudogene models | ||
82 | Rearrangement | Caltech | ? | ||
83 | ReconCellInfo | OICR | ? | ||
84 | Reconstruction | OICR | ? | ||
85 | Reference | Caltech | ? | ||
86 | RNAi | Caltech | Stores information pertaining to RNAi experiments, including RNAi probe targets, resulting phenotypes, and associated papers. | Gary Schindleman, Chris Grove | |
87 | SAGE_experiment | Sanger | ? | Wen Chen | |
88 | SAGE_tag | Sanger | ? | Wen Chen | |
89 | Sequence | Sanger | A broad class for storing genomic, Transcripts Sequence etc. | ||
90 | SK_map | Caltech | ? | ||
91 | SO_term | Caltech | ? | ||
92 | Species | Sanger | ? | ||
93 | Strain | Sanger | ? | ||
94 | Structure_data | OICR | ? | ||
95 | Timepoint | OICR | ? | ||
96 | Transcript | Sanger | Stores RNAgenes and the Full length Coding_transcripts | ||
97 | Transgene | Caltech | ? | ||
98 | Transposon | Sanger | Stores the Transposon span and S_child info | Paul Davis | |
99 | Transposon_family | Sanger | Used for grouping like ?Transposons | Paul Davis | |
100 | Variation | Sanger | ? | Mary Ann | |
101 | Variation_name | Sanger | ? | ||
102 | YH | Caltech | ? |