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  • AceDB classes
    ...ist of the most prominent classes in use in the AceDB database employed by WormBase. To display the current model of any class, include the following text in your documentation:
    4 KB (568 words) - 11:06, 23 May 2011
  • WBConfCall 2015.04.16-Agenda and Minutes
    == WS249 model == === ?Interaction model (Chris) ===
    1 KB (198 words) - 17:01, 16 April 2015
  • WormBase Model:Multi counts
    [[WormBase Models]] Unused class in wormbase and it appears that the acedb source code doesn't look for this specific cl
    816 bytes (100 words) - 15:47, 4 October 2010
  • WormBase Model:Database field
    [[WormBase Models]] ?Gene
    700 bytes (98 words) - 09:44, 4 October 2010
  • WormBase Model:Gene name
    [[WormBase Models]] == Model ==
    842 bytes (93 words) - 12:59, 4 October 2010
  • WormBase Model:Multi pt data
    [[WormBase Models]] == Model ==
    2 KB (163 words) - 15:52, 4 October 2010
  • WormBase Model:Balancer
    [[WormBase Models]] == Model ==
    244 bytes (29 words) - 11:07, 10 August 2010
  • Paper Pipeline
    #[[Alliance - migrating WormBase papers to Alliance ABC]] #[[Getting Meeting Abstracts into WormBase]]
    1 KB (130 words) - 21:21, 15 March 2021
  • WormBase Model:WBProcess
    [[WormBase Models]] == Model ==
    3 KB (275 words) - 01:07, 6 February 2014
  • WormBase Model:Map
    [[WormBase Models]] == Model ==
    2 KB (208 words) - 14:36, 4 October 2010
  • AceOjbect Redesign Page
    == The A - Z of Ace Model and Redesign Page == ...ndex of available Ace classses; see the [https://spreadsheets.google.com/a/wormbase.org/ccc?key=tygSYCz49YW5hyCcYMHUZ1Q#gid=2 Google Doc] for migration status.
    12 KB (1,559 words) - 18:14, 15 June 2011
  • WormBase Model:3d data
    [[WormBase Models]] == Model ==
    2 KB (133 words) - 09:56, 10 August 2010
  • WormBase Model:Strain
    [[WormBase Models]] == Model ==
    1 KB (119 words) - 16:43, 11 April 2013
  • Disease and Drugs
    ==C. elegans as a model system to study disease and disease genes== ...s is used to model the biology of a disease and/or the orthologous elegans gene function is studied in detail. We have developed a method to identify and f
    5 KB (782 words) - 20:56, 8 January 2020
  • Data mining
    == Data Model == ...l|About the WormBase data model]] - ''how data is stored and structured at WormBase''
    2 KB (264 words) - 01:36, 1 April 2022
  • WormBase Model:Variation name
    [[WormBase Models]] == Model ==
    309 bytes (39 words) - 09:49, 10 August 2010
  • WormBase Model:Anatomy function
    [[WormBase Models]] == Model ==
    1 KB (119 words) - 10:41, 10 August 2010
  • WBConfCall 2012.08.16-Agenda and Minutes
    == Model Change Sign Off == [https://github.com/WormBase/website/issues/241 issue 241] "Nucl. Aligner Tool bug."
    2 KB (294 words) - 16:14, 16 August 2012
  • WormBase Model:Position Matrix
    [[WormBase Models]] == Model ==
    1 KB (125 words) - 15:01, 4 October 2012
  • WBConfCall 2017-10-18-Agenda and Minutes
    === Linkouts to AGR from WB gene & disease pages === * Yeast gene page: https://qa.yeastgenome.org/locus/S000000364
    2 KB (250 words) - 16:12, 19 October 2017
  • WormBase Model:Locus
    [[WormBase Models]] == Model ==
    2 KB (193 words) - 14:28, 4 October 2010
  • WormBase Model:Feature
    [[WormBase Models]] Updated model and unused tags for WS245 elegans data from pre-merged BUILD/elegans databa
    4 KB (394 words) - 08:39, 16 September 2014
  • WS227 Models.wrm
    == Model Changes == Gene class
    3 KB (306 words) - 10:00, 26 October 2011
  • WormBase Model:Antibody
    [[WormBase Models]] == Model ==
    3 KB (318 words) - 00:53, 7 December 2010
  • WBConfCall 2019.01.17-Agenda and Minutes
    * [https://github.com/WormBase/website/issues/6841 TICKET #6841 I was looking at the modENCODE ChIP-S * [https://github.com/WormBase/website/issues/6831 TICKET #6831 Looking to buy clones of Syphacia mur
    2 KB (292 words) - 17:44, 17 January 2019
  • WormBase Model:Phenotype info
    [[WormBase Models]] == Model ==
    5 KB (352 words) - 17:20, 25 September 2015
  • Phasing out the manual annotations
    This gene encodes a protein containing an F-box, a motif predicted to mediate The protein product of this gene is predicted to contain a glutamine/asparagine
    2 KB (259 words) - 19:11, 19 February 2016
  • WBConfCall 2014.03.06-Agenda and Minutes
    As the modENCODE DCC is overwhelmed with other work, she has proposed that WormBase make the data available to the public. Our position with providing primary data to users has always been that WormBase isn't a primary repository of data.
    5 KB (796 words) - 21:05, 10 March 2014
  • WormBase Model:RNAi
    [[WormBase Models]] == Model ==
    3 KB (312 words) - 15:14, 15 July 2010
  • NBC sign off documentation
    * File in /usr/local/wormbase/databases/{RELEASE}/orthology and automatically generated by orthology data ...h the associations available from the orthology data compile -- /usr/local/wormbase/databases/{RELEASE}/orthology/go_id2omim_ids.txt
    4 KB (583 words) - 20:22, 29 July 2011
  • WormBase Model:Gene class
    [[WormBase Models]] == Model ==
    648 bytes (65 words) - 12:56, 4 October 2010
  • WormBase-Caltech Weekly Calls September 2021
    *stub of person Alliance model already exists made by Adam http://dev.alliancegenome.org:11223/redoc#tag/P *Daniela and Karen invite PomBase to start harmonizing a person model, will send all Alliance an invite
    2 KB (325 words) - 15:24, 7 October 2021
  • WormBase Model:SAGE tag
    [[WormBase Models]] == Model ==
    1 KB (159 words) - 09:16, 5 October 2010
  • WBConfCall 2011.12.15-Agenda and Minutes
    Protein model Uncaptured gene & protein synonyms
    1,008 bytes (159 words) - 19:13, 15 December 2011
  • WormBase Model:Pos neg data
    [[WormBase Models]] == Model ==
    1 KB (146 words) - 08:38, 5 October 2010
  • Specifications for WB gpi file
    We will need to create a tab-delimited gpi file with each WormBase release. !Project_name: WormBase
    5 KB (720 words) - 20:46, 10 October 2016
  • WormBase Model:YH
    [[WormBase Models]] == Model ==
    1 KB (139 words) - 09:51, 10 August 2010
  • Rnaseq library details
    == Model == ...// Ribo-zero treated to reduce the amount of ribosome gene transcripts
    3 KB (252 words) - 16:46, 9 January 2014
  • WormBase Model:Pseudogene
    [[WormBase Models]] == Model ==
    3 KB (223 words) - 09:22, 10 August 2010
  • WormBase Newsletter No. 6, August 2004
    The WS126 release of WormBase last month featured a complete genome with no gaps remaining in the genome == WormBase launches the 'WormBook' project ==
    4 KB (621 words) - 15:38, 24 September 2007
  • WS183
    New release of WormBase WS183, Wormpep183 and Wormrna183 Tue Oct 16 16:18:34 BST 2007 ...map_positions.WS183.gz - Interpolated map positions for each coding/RNA gene
    7 KB (800 words) - 10:01, 8 November 2007
  • WBConfCall 2018.03.15-Agenda and Minutes
    ==Importing Undiagnosed Diseases Network (UDN) worm data into WormBase== *Initially thought it would be textual data that would go into disease model curation, but really involves other data types such as Variation, Strain, P
    3 KB (400 words) - 16:03, 15 March 2018
  • WormBase Model:Protein
    [[WormBase Models]] == Model ==
    2 KB (305 words) - 08:49, 5 October 2010
  • WormBase Model:Gene regulation
    [[WormBase Models]] == Model ==
    5 KB (514 words) - 21:15, 7 December 2010
  • WormBase Model:Expr pattern
    [[WormBase Models]] == Model ==
    4 KB (497 words) - 22:42, 6 December 2010
  • WS185
    New release of WormBase WS185, Wormpep185 and Wormrna185 Fri Nov 30 17:11:38 GMT 2007 ...map_positions.WS185.gz - Interpolated map positions for each coding/RNA gene
    6 KB (680 words) - 07:37, 11 January 2008
  • Working Groups
    ...is the "Working Groups" page. Working Groups are intended to be groups of WormBase staff focused on particular issues, whether they be WormBase bugs, data architecture, enhancements/proposals, etc.
    2 KB (306 words) - 15:01, 14 January 2016
  • WS186
    New release of WormBase WS186, Wormpep186 and Wormrna186 Fri Dec 21 08:57:59 GMT 2007 ...map_positions.WS186.gz - Interpolated map positions for each coding/RNA gene
    6 KB (683 words) - 05:51, 3 April 2008
  • WormBase-Caltech Weekly Calls August 2011
    *Community annotation form needs to be very simple (e.g. gene name and empty box only) Gene file from Hinxton to populate Gene Tables
    4 KB (650 words) - 17:08, 1 September 2011
  • WBConfCall 2020.06.18-Agenda and Minutes
    ===Testing data for WS278 model changes=== **Note that for gene-paper associations, we try to only associate genes that are studied in some
    3 KB (490 words) - 17:22, 18 June 2020
  • WBConfCall 2012.12.06-Agenda and Minutes
    = Proposed Model changes = Link to the model changes proposed for WS236 [[WS236_Models.wrm]]
    5 KB (752 words) - 18:55, 6 December 2012
  • WormBase Model:Transcript
    [[WormBase Models]] == Model ==
    4 KB (350 words) - 09:32, 17 June 2013
  • Website:Molecule Object Widget Requirements Specification
    This document describes the WebApp requirements for: ''a new WormBase Molecule widget''. <br/> These requirements originate from: [[User:Kyook|Karen Yook]], a CalTech-based WormBase curator.
    1 KB (209 words) - 19:57, 25 July 2012
  • December 15, 2010
    ;item 3 - Interaction Model (slides 4-5, attached .ppt in documents distributed section) #Chris and Gary will try to map WormBase interaction types to BioGRID interaction types and figure out what the diff
    3 KB (475 words) - 22:50, 17 December 2010
  • INTRODUCTION
    ...rent type (such as the DNA sequence of the gene, or the cells in which the gene is active). One can also do searches for complex data sets. ...n of WormBase available in September, 2005 (WS147 release; BioPerl/Generic Model Organism Database software).
    2 KB (365 words) - 00:06, 1 December 2010
  • WBConfCall 2012.11.01-Agenda and Minutes
    1. Model change --ticket #588 David Baillie from Vancouver group would like wormbase to fix the BC strains (gfp expression strains) display, so that users won't
    1 KB (182 words) - 10:02, 2 November 2012
  • WormBase Model:Operon
    [[WormBase Models]] == Model ==
    1 KB (120 words) - 09:24, 10 August 2010
  • WS246 Models.wrm
    == Model changes for WS246 == * This cycle we see 6 model changes effecting 7 classes:
    3 KB (413 words) - 15:51, 18 September 2014
  • Regional and Topical Meetings
    ...regional and topical meetings held at various locations around the world. WormBase includes the abstracts from these meetings in our database. ...getting the regional and topical meeting abstracts into postgres and then WormBase.
    1 KB (201 words) - 16:34, 15 October 2012
  • WS184
    ew release of WormBase WS184, Wormpep184 and Wormrna184 Thu Nov 8 12:09:34 GMT 2007 ...map_positions.WS184.gz - Interpolated map positions for each coding/RNA gene
    7 KB (831 words) - 07:36, 11 January 2008
  • WormBase Model:GO term
    [[WormBase Models]] == Model ==
    2 KB (183 words) - 13:25, 4 October 2010
  • WBConfCall 2014.09.03-Agenda and Minutes
    ...y enthusiastic response from Chris and Nicole about including worm disease model data ...ion.WS245.wb, however this is incomplete since it doesn't have the disease model descriptions, and the manually curated OMIM connections, so also sent them
    5 KB (807 words) - 18:27, 4 September 2014
  • WormBase Models
    = The A - Z of WormBase Models = Document created from [http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?root=ensembl&view=markup&pathrev=WS218 WS218] models.
    16 KB (2,207 words) - 23:06, 9 January 2014
  • WormBase Model:Expression cluster
    [[WormBase Models]] == Model ==
    2 KB (177 words) - 22:50, 6 December 2010
  • 2008.01-Toronto
    * Describe how to develop for the WormBase implementation **document fetching the WormBase code
    3 KB (365 words) - 19:14, 10 August 2010
  • WormBase Model:Microarray results
    [[WormBase Models]] == Model ==
    2 KB (152 words) - 14:44, 4 October 2010
  • WBConfCall 2020.12.03-Agenda and Minutes
    * [https://github.com/WormBase/website/issues/8008 egl-1 automated gene description] * [https://github.com/WormBase/website/issues/8006 We have identified from RNAseq....]
    2 KB (239 words) - 17:32, 3 December 2020
  • WormBase Model:Transgene
    [[WormBase Models]] ==Updated model for WS245==
    13 KB (1,341 words) - 20:12, 22 September 2015
  • WS146
    <pre>New release of WormBase WS146, Wormpep146 and Wormrna146 Thu Jul 28 14:01:21 BST 2005 ...map_positions.WS146.gz - Interpolated map positions for each coding/RNA gene
    6 KB (670 words) - 11:09, 21 December 2011
  • WBConfCall 2017.03.16-Agenda and Minutes
    === Datomic model for external links === * Hinxton will work on simplifying the model
    3 KB (493 words) - 16:08, 16 March 2017
  • WS236 Models.wrm
    === * Transposon gene reactivation - Paul === ==== Poor nomenclature in ?Gene history and Event ====
    8 KB (1,073 words) - 15:31, 14 December 2012
  • WormBase gene association file
    ...e here] for an archive of outdated/obsolete information about the WormBase gene association file. == Gene Association File (GAF) format ==
    12 KB (1,718 words) - 17:45, 5 February 2021
  • WormBase-Caltech Weekly Calls July 2014
    * We should ask users what they want: e.g. Is an Ascaris suum gene ortholog in C. elegans essential? ** Can try demo version with any S. pombe or S. cerevisiae gene names/ids
    4 KB (622 words) - 16:47, 6 August 2014
  • WormBase-Caltech Weekly Calls January 2012
    *BioGRID, Gene Orienteer, Interolog database, etc. *Gene Orienteer
    5 KB (847 words) - 17:49, 1 March 2012
  • Mailing lists
    WormBase staff can find this document in the "Documentation" directory and edit it t = About Groups at WormBase =
    5 KB (757 words) - 01:45, 2 June 2014
  • WormBase-Caltech Weekly Calls December 2013
    * There are papers in the WormBase collection that are used as paper evidence for some concise descriptions ==== LEGO (Logical Extensions of Gene Ontology) ====
    6 KB (823 words) - 19:38, 2 January 2014
  • Main Page
    ...is elegans] and related nematodes. WormBase is developed by an [http://www.wormbase.org/about/staff#01--10 international consortium] of researchers and compute *November 2020 -- ''[https://wiki.wormbase.org/images/Elections_Subcommittee_Proposal_toWBvote.docx Election Subcommit
    5 KB (646 words) - 17:11, 25 November 2020
  • WS198
    <pre>New release of WormBase WS198, Wormpep198 and Wormrna198 Thu Dec 18 19:31:36 GMT 2008 ...map_positions.WS198.gz - Interpolated map positions for each coding/RNA gene
    6 KB (692 words) - 16:51, 21 December 2011
  • WebDev 2016.02.23-Agenda and Minutes
    * integrated search for their gene and protein under their strain (not mixed up with the default strain) - Had conversation with GO people about gene model graph, will work on this visualization after WS252 development
    3 KB (478 words) - 15:41, 23 February 2016
  • WBConfCall 2020.08.20-Agenda and Minutes
    * uncharacterized eukaryotic protein-coding gene with an intron ** https://github.com/WormBase/website/issues/7829
    3 KB (440 words) - 08:42, 3 September 2020
  • WormBase Model:Rearrangement
    [[WormBase Models]] == Model ==
    3 KB (265 words) - 08:51, 5 October 2010
  • WormBase Model:Paper
    [[WormBase Models]] == Model ==
    5 KB (471 words) - 16:07, 4 October 2010
  • WormBase Model:Gene
    [[WormBase Models]] == Model ==
    7 KB (712 words) - 10:40, 4 October 2010
  • WS192
    <pre>New release of WormBase WS192, Wormpep192 and Wormrna192 Tue Jun 24 11:23:32 BST 2008 ...map_positions.WS192.gz - Interpolated map positions for each coding/RNA gene
    6 KB (763 words) - 10:43, 21 December 2011
  • UniProt Paper - Gene - Data Type
    The Categories would be gene-specific and we will supply information for: New pipeline proposal is to retrieve information from WormBase ftp site, which will be updated with each release.
    4 KB (556 words) - 12:45, 21 May 2019
  • WormBase-Caltech Weekly Calls June 2014
    === WormBase Ontology Browser (WOBr) for WS244 release === * May be migrating to GPAD/GPI [Gene Product Annotation Data / Gene Product Information] format in future
    6 KB (801 words) - 17:29, 2 July 2014
  • WBConfCall 2023.04.06-Agenda and Minutes
    **** java -cp wb-names-export.jar clojure.main -m wormbase.names.export gene genes.csv ...arriving at many: Using WormBase and the Alliance of Genome Resources for gene data. (10 mins + 5 mins for questions)** Talk 2: What tool do I use? Matchi
    7 KB (1,113 words) - 18:19, 6 April 2023
  • WormBase-Caltech Weekly Calls March 2014
    * ?Construct model === ?Construct model ===
    8 KB (1,218 words) - 17:46, 2 April 2014
  • WBConfCall 2021.04.01-Agenda and Minutes
    ...s are being dealt with or closed, except github ticket [https://github.com/WormBase/website/issues/8156| #8156] * https://github.com/WormBase/website/issues/8156 - - needs a reply from textpresso group -Valerio will t
    4 KB (709 words) - 13:27, 5 April 2021
  • WBConfCall 2013.11.21-Agenda and Minutes
    Curators checked their model proposals in this file: WS241 pre-WS241 tagged models [[http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?revision=1.396&root=ensembl&view=markup pre-WS241]]
    6 KB (909 words) - 21:56, 21 November 2013
  • WBConfCall 2015.06.04-Agenda and Minutes
    ...l have setup the community curation portal page on staging: http://staging.wormbase.org/about/userguide/submit_data#0--10 == GO term enrichment (TE) tool for WormBase ==
    3 KB (539 words) - 10:56, 5 June 2015
  • BASIC PROTOCOL 9: FINDING SEQUENCE SIMILARITIES WITH BLAST
    This protocol describes how to BLAST a sequence against the sequences in WormBase. Further discusion of the BLAST algorithm can be found in ''UNITS 3.3, 3.4, ...e.org/wiki/index.php/Image:Fig_1_8_01.png). This will lead to http://blast.wormbase.org/db/searches/blat. This is the method of choice for searching the ''C. e
    3 KB (401 words) - 20:02, 11 August 2010
  • WormBase-Caltech Weekly Calls October 2020
    === Gene association file formats on FTP === ...current production release ONTOLOGY directory: ftp://ftp.wormbase.org/pub/wormbase/releases/current-production-release/ONTOLOGY/
    6 KB (861 words) - 19:23, 5 November 2020
  • WS204
    New release of WormBase WS204, Wormpep204 and Wormrna204 Fri Jun 26 20:17:06 BST 2009 ...map_positions.WS204.gz - Interpolated map positions for each coding/RNA gene
    6 KB (648 words) - 16:16, 21 December 2011
  • WormBase-Caltech Weekly Calls November 2011
    Gene ID mapping problems (as discussed in site-wide call) *Does CIT need to worry about consistency of gene IDs over database builds?
    4 KB (612 words) - 17:13, 1 December 2011
  • WormBase Model:Interaction
    [[WormBase Models]] == Old Model ==
    12 KB (1,431 words) - 19:06, 20 March 2012
  • WS187
    New release of WormBase WS187, Wormpep187 and Wormrna187 Fri Jan 25 20:22:16 GMT 2008 ...map_positions.WS187.gz - Interpolated map positions for each coding/RNA gene
    6 KB (647 words) - 16:43, 21 December 2011
  • WBConfCall 2020.07.16-Agenda and Minutes
    * Protein aligner appears to be broken: https://github.com/WormBase/website/issues/7793 **Formally refer to the standard HGNC human gene in disease model curation and other types of curation
    3 KB (529 words) - 18:26, 16 July 2020
  • Specifications for a DAF for gene-disease data
    ...parate AGR orthology pipeline to link human genes and their orthologs from model organisms. !Project_name: WormBase (WB) Version WS258
    10 KB (1,599 words) - 18:53, 24 January 2019
  • WS199
    <pre>New release of WormBase WS199, Wormpep199 and Wormrna199 Tue Feb 3 12:09:54 GMT 2009 ...map_positions.WS199.gz - Interpolated map positions for each coding/RNA gene
    6 KB (661 words) - 16:51, 21 December 2011
  • WS171
    <nowiki>New release of WormBase WS171, Wormpep171 and Wormrna171 Thu Feb 8 15:28:27 GMT 2007 ...map_positions.WS171.gz - Interpolated map positions for each coding/RNA gene
    6 KB (652 words) - 10:55, 21 December 2011
  • WS175
    New release of WormBase WS175, Wormpep175 and Wormrna175 Fri May 4 16:29:43 BST 2007 ...map_positions.WS175.gz - Interpolated map positions for each coding/RNA gene
    6 KB (680 words) - 10:54, 21 December 2011
  • WBConfCall 2016.12.15-Agenda and Minutes
    ...e from the Orthology WG for WB to move to a once-per-year update cycle for gene models. What do people think? * Faye Rodgers has recently joined WormBase @ Sanger to work with parasites
    2 KB (351 words) - 18:32, 15 December 2016
  • WS147
    <pre>New release of WormBase WS147, Wormpep147 and Wormrna147 Thu Aug 18 16:59:45 BST 2005 ...map_positions.WS147.gz - Interpolated map positions for each coding/RNA gene
    7 KB (815 words) - 11:09, 21 December 2011
  • WBConfCall 2018.03.01-Agenda and Minutes
    == WormBase SAB Meeting Date == * [https://github.com/WormBase/website/issues/6213 SNPs in specific genomic regions in Hawaiian C. elegans
    4 KB (574 words) - 01:54, 2 March 2018
  • WS196
    <pre>New release of WormBase WS196, Wormpep196 and Wormrna196 Fri Oct 31 16:00:42 GMT 2008 ...map_positions.WS196.gz - Interpolated map positions for each coding/RNA gene
    6 KB (748 words) - 16:41, 21 December 2011
  • WS173
    New release of WormBase WS173, Wormpep173 and Wormrna173 Fri Mar 23 18:22:22 GMT 2007 ...map_positions.WS173.gz - Interpolated map positions for each coding/RNA gene
    6 KB (639 words) - 10:55, 21 December 2011
  • WS203
    New release of WormBase WS203, Wormpep203 and Wormrna203 Thu May 28 13:24:17 BST 2009 ...map_positions.WS203.gz - Interpolated map positions for each coding/RNA gene
    6 KB (662 words) - 16:50, 21 December 2011
  • BASIC PROTOCOL 2: PERFORMING A DATABASE SEARCH
    This protocol presents how to conduct a general search of WormBase ...king on the Home link at the top left of any WormBase Web page (http://www.wormbase.org/wiki/index.php/Image:Fig_1_8_01.png).
    3 KB (545 words) - 19:56, 11 August 2010
  • WormBase Model:CDS
    [[WormBase Models]] == Model ==
    4 KB (410 words) - 17:08, 17 August 2010
  • WS178
    New release of WormBase WS178, Wormpep178 and Wormrna178 Wed Jul 4 12:56:45 BST 2007 ...map_positions.WS178.gz - Interpolated map positions for each coding/RNA gene
    7 KB (762 words) - 10:53, 21 December 2011
  • WS158
    <pre>New release of WormBase WS158, Wormpep158 and Wormrna158 Thu May 4 13:10:59 BST 2006 WS158 was built by Paul Davis [paul.davis@wormbase.org]
    6 KB (673 words) - 11:07, 21 December 2011
  • WS191
    <pre>New release of WormBase WS191, Wormpep191 and Wormrna191 Mon Jun 2 09:50:52 BST 2008 ...map_positions.WS191.gz - Interpolated map positions for each coding/RNA gene
    6 KB (756 words) - 16:53, 21 December 2011
  • WS205
    New release of WormBase WS205, Wormpep205 and Wormrna205 Wed Jul 22 10:29:27 BST 2009 ...map_positions.WS205.gz - Interpolated map positions for each coding/RNA gene
    6 KB (711 words) - 16:31, 21 December 2011
  • WormBase-Caltech Weekly Calls October 2011
    *Yuling should contact FlyBase to make sure they're OK, once he has WormBase SVM working Physical interaction model
    7 KB (1,064 words) - 19:12, 3 November 2011
  • WS214
    New release of WormBase WS214, Wormpep214 and Wormrna214 Tue Apr 27 15:37:39 BST 2010 ...map_positions.WS214.gz - Interpolated map positions for each coding/RNA gene
    6 KB (709 words) - 16:49, 21 December 2011
  • WS163
    <pre>New release of WormBase WS163, Wormpep163 and Wormrna163 Thu Aug 17 10:49:02 BST 2006 WS163 was built by Paul Davis [paul.davis@wormbase.org]
    6 KB (645 words) - 10:57, 21 December 2011
  • WBConfCall 2015.05.21-Agenda and Minutes
    == OMIM links to/from WormBase == * Ranjana working on linking between WormBase and OMIM
    2 KB (384 words) - 20:25, 21 May 2015
  • WS182
    New release of WormBase WS182, Wormpep182 and Wormrna182 Thu Sep 27 11:59:39 BST 2007 ...map_positions.WS182.gz - Interpolated map positions for each coding/RNA gene
    6 KB (716 words) - 16:48, 21 December 2011
  • WBConfCall 2012.05.03-Agenda and Minutes
    model? It seems pretty redundant with the Paper information and I'm not to WormBase?"
    4 KB (599 words) - 00:25, 4 May 2012
  • WS209
    New release of WormBase WS209, Wormpep209 and Wormrna209 Fri Nov 27 11:57:36 GMT 2009 ...map_positions.WS209.gz - Interpolated map positions for each coding/RNA gene
    6 KB (687 words) - 16:50, 21 December 2011
  • WS160
    New release of WormBase WS160, Wormpep160 and Wormrna160 Thu Jun 15 16:29:46 BST 2006 ...map_positions.WS160.gz - Interpolated map positions for each coding/RNA gene
    6 KB (706 words) - 10:50, 21 December 2011
  • WBConfCall 2012.04.19-Agenda and Minutes
    == 1. Model changes (Hinxton) == 1a) Variation model sign off
    7 KB (1,182 words) - 13:50, 20 April 2012
  • WS197
    <pre>New release of WormBase WS197, Wormpep197 and Wormrna197 Wed Nov 26 19:40:37 GMT 2008 ...map_positions.WS197.gz - Interpolated map positions for each coding/RNA gene
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  • WS201
    New release of WormBase WS201, Wormpep201 and Wormrna201 Wed Mar 25 15:30:27 GMT 2009 ...d_map_positions.WS201.gz - Interpolated map positions for each coding/RNA gene
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  • WBConfCall 2022.03.03-Agenda and Minutes
    * New Hinxton WormBase GTL: Sarah Dyer ...cussing further with you the idea of inserting WormCyc pathway diagrams in Wormbase pages."
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  • WBConfCall 2012.02.16-Agenda and Minutes
    ==== Unified Interaction model - Chris & Kimberly ==== * PaulD: The model is OK but is the web capable of displaying it?
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  • WormBase-Caltech Weekly Calls June 2017
    * Left over bandanas? paid ~$1 per bandana before. We have enough for WormBase staff ...ng on ?Phenotype_assay (?Phenotype_experiment/?Phenotype_annotation) class model
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  • WS213
    New release of WormBase WS213, Wormpep213 and Wormrna213 Tue Mar 23 16:36:18 GMT 2010 ...map_positions.WS213.gz - Interpolated map positions for each coding/RNA gene
    6 KB (764 words) - 16:45, 21 December 2011
  • WS154
    <pre>New release of WormBase WS154, Wormpep154 and Wormrna154 Fri Feb 10 12:46:08 GMT 2006 ...map_positions.WS154.gz - Interpolated map positions for each coding/RNA gene
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  • WS188
    New release of WormBase WS188, Wormpep188 and Wormrna188 Fri Feb 29 14:53:33 GMT 2008 WS188 was built by [Michael Han (michael.paulini@wormbase.org)]
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  • WS216
    New release of WormBase WS216, Wormpep216 and Wormrna216 Tue Jun 29 12:53:35 BST 2010 ...map_positions.WS216.gz - Interpolated map positions for each coding/RNA gene
    7 KB (818 words) - 11:10, 21 December 2011
  • WormBase Model:2 point data
    [[WormBase Models]] == Model ==
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  • WS189
    New release of WormBase WS189, Wormpep189 and Wormrna189 Thu Apr 3 10:28:39 BST 2008 WS189 was built by [Paul Davis (paul.davis@wormbase.org)]
    6 KB (668 words) - 11:01, 21 December 2011
  • WormBase-Caltech Weekly Calls September 2016
    * Simply: is a gene in a cell/tissue or not; is it enriched in a cell/tissue or not ...uld we want to apply some type of weighting to each type of evidence for a gene-anatomy association, for example
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  • WBConfCall 2023.02.02-Agenda and Minutes
    *Issue #8919: In 2020, we corrected gene annotations of the nematode Pristionchus pacificus. ** Do we want standard Alliance gene pages for all genes from non-canonical species?
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  • WormBase Newsletter No. 3, October 2003
    == WormBase Version Freeze == ...WormBase, e. g., WS100 (http://ws100.wormbase.org) and WS110 (http://ws110.wormbase.org). These reference releases are available for perpetuity on dedicated se
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  • WS210
    New release of WormBase WS210, Wormpep210 and Wormrna210 Tue Dec 22 12:35:31 GMT 2009 ...map_positions.WS210.gz - Interpolated map positions for each coding/RNA gene
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  • WormBase Literature Curation Workflow
    =WormBase Curated Data Types and Curation Methods= GEO - Gene Expression Omnibus
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  • Caenorhabditis angaria
    6 Oct 2010: The latest changes to the assembly are due to be added to WormBase in release WS221. ...this is done, we are happy to turn the ownership of the genome sequence to WormBase. - Paul Sternberg.
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  • WS181
    New release of WormBase WS181, Wormpep181 and Wormrna181 Fri Sep 7 11:40:20 BST 2007 ...map_positions.WS181.gz - Interpolated map positions for each coding/RNA gene
    8 KB (885 words) - 16:47, 21 December 2011
  • WS289
    New release of WormBase WS288 WS288 was built by Stavros Diamantakis with the input from the WormBase Community and Team. Thank you!
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  • WS138
    <pre>New release of WormBase WS138, Wormpep138 and Wormrna138 Thu Jan 20 11:55:33 GMT 2005 ...map_positions.WS138.gz - Interpolated map positions for each coding/RNA gene
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  • WS195
    ...sp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; 13229 (44.3%)<br>WormBase_approved Gene name 15596 (52.2%)<br>RNAi_result&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp; ...open your database, e.g.<br>&nbsp;&nbsp;&nbsp; type 'xace /users/yourname/wormbase' at the command prompt.<br><br>5. See the acedb website for more informatio
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  • WormBase-Caltech Weekly Calls December 2014
    ...reviously only with a text description are getting updated to fit the data model === Interaction-Gene associations ===
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  • WormBase-Caltech Weekly Calls February 2012
    EPIC data into WormBase *Need to modify model and display for data
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  • WormBase-Caltech Weekly Calls February 2011
    *Should we take minutes of Caltech WormBase group meetings and send around? *WormBase-wide conference call twice per month
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  • WS170
    New release of WormBase WS170, Wormpep170 and Wormrna170 Fri Jan 19 09:31:14 GMT 2007 ...map_positions.WS170.gz - Interpolated map positions for each coding/RNA gene
    8 KB (820 words) - 10:51, 21 December 2011
  • WS176
    new release of WormBase WS176, Wormpep176 and Wormrna176 Mon May 21 11:58:06 BST 2007 ...map_positions.WS176.gz - Interpolated map positions for each coding/RNA gene
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  • WormBase-Caltech Weekly Calls March 2015
    === GO data model change === * Changes to gene association file has implications for automated descriptions
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  • WS206
    New release of WormBase WS206, Wormpep206 and Wormrna206 Fri Aug 28 13:06:57 BST 2009 ...map_positions.WS206.gz - Interpolated map positions for each coding/RNA gene
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  • WS172
    <nowiki>New release of WormBase WS172, Wormpep172 and Wormrna172 Fri Mar 2 16:35:57 GMT 2007 ...map_positions.WS172.gz - Interpolated map positions for each coding/RNA gene
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  • WS284
    New release of WormBase WS284 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES)
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  • WS208
    New release of WormBase WS208, Wormpep208 and Wormrna208 Tue Oct 27 13:31:22 GMT 2009 ...map_positions.WS208.gz - Interpolated map positions for each coding/RNA gene
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  • 2014 Advisory Board Meeting
    ...curating phenotypes/variation for better comparability with human disease gene function *** ParaSite and integration with WormBase central.
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  • WS179
    New release of WormBase WS179, Wormpep179 and Wormrna179 Mon Jul 30 12:21:01 BST 2007 ...map_positions.WS179.gz - Interpolated map positions for each coding/RNA gene
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  • WormBase Model:Variation
    [[WormBase Models]] == Model ==
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  • WS180
    New release of WormBase WS180, Wormpep180 and Wormrna180 Fri Aug 17 13:41:37 BST 2007 ...map_positions.WS180.gz - Interpolated map positions for each coding/RNA gene
    7 KB (771 words) - 10:52, 21 December 2011
  • WormBase-Caltech Weekly Calls January 2014
    ...Karen, others are welcome. Visit the construct model requests [http://wiki.wormbase.org/index.php/WormBase_Model:Construct here] ...arned enough Catalyst to create a workable ontology browser on the caltech wormbase sandbox.
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  • WBConfCall 2014.07.17-Agenda and Minutes
    *http://wiki.wormbase.org/index.php/WBConfCall_2014.07.03-Agenda_and_Minutes#List_of_Existing_WB_ === Any updates with the nurf-1 gene naming? ===
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  • WS190
    <pre>New release of WormBase WS190, Wormpep190 and Wormrna190 Fri Apr 25 11:03:36 BST 2008 ...map_positions.WS190.gz - Interpolated map positions for each coding/RNA gene
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  • WormBase Model:Clone
    [[WormBase Models]] == Model ==
    10 KB (1,176 words) - 22:24, 18 March 2014
  • WS212
    <pre>New release of WormBase WS212, Wormpep212 and Wormrna212 Mon Mar 1 11:51:04 GMT 2010 ...map_positions.WS212.gz - Interpolated map positions for each coding/RNA gene
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  • WormBase-Caltech Weekly Calls July 2015
    * Ontology term enrichment analysis, using ontologies other than gene ontology === Taking over Gene Orienteer ===
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  • WS193
    <pre>New release of WormBase WS193, Wormpep193 and Wormrna193 Fri Jul 25 22:12:15 BST 2008 ...map_positions.WS193.gz - Interpolated map positions for each coding/RNA gene
    8 KB (944 words) - 16:52, 21 December 2011
  • WormBase-Caltech Weekly Calls April 2017
    * Users could specify groups of data (with checkboxes): gene IDs/names, phenotypes, orthology, etc. === Gene Ontology SObA graph ===
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  • WS194
    <pre>New release of WormBase WS194, Wormpep194 and Wormrna194 Tue Sep 2 10:54:51 BST 2008 ...map_positions.WS194.gz - Interpolated map positions for each coding/RNA gene
    8 KB (936 words) - 16:48, 21 December 2011
  • WormBase-Caltech Weekly Calls December 2015
    * Curators will likely need to work with a models "master" to make model changes * http://juancarlos.wormbase.org , look at a gene page, open Phenotype Graph widget
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  • WS174
    ...map_positions.WS174.gz - Interpolated map positions for each coding/RNA gene xiii) geneIDs.WS174.gz - list of all current gene identifiers with CGC &amp; molecular names (when known)
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  • WS177
    New release of WormBase WS177, Wormpep177 and Wormrna177 Fri Jun 15 15:39:40 BST 2007 ...map_positions.WS177.gz - Interpolated map positions for each coding/RNA gene
    9 KB (819 words) - 10:53, 21 December 2011
  • WormMine
    [http://intermine.wormbase.org/tools/wormmine/begin.do WormMine] [https://github.com/WormBase/intermine WormMine Github]
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  • Meloidogyne hapla
    ...elegans'' (most notably through a reduction of odorant receptors and other gene families), yet it has acquired horizontally from other kingdoms numerous ge ...his database, termed HapPep3, available from the Superfamily repository of model organism proteomes ([http://supfam.mrc-lmb.cam.ac.uk/SUPERFAMILY http://sup
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  • WormBase-Caltech Weekly Calls August 2014
    * Collecting model/pathway diagrams from papers and reviews: should we make ?Picture objects f === WormBase Ontology Browser ===
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  • WBConfCall 2011.11.03-Agenda and Minutes
    WormBase Site-Wide Conference Call Meeting Minutes **1- Gene regulation networks paper
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  • WormBase-Caltech Weekly Calls February 2014
    ** model change to put topics in hierarchical structure. === Gene Association files ===
    10 KB (1,485 words) - 18:08, 5 March 2014
  • Hinxton 2015.08- Meeting minutes
    * Further discussed capturing/registering when a curator has reviewed a gene model but not made a change ** e.g. Gene -> Variation (#Evidence), Variation -> Gene (#Molecular_change)
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  • WBConfCall 2016.10.06-Agenda and Minutes
    https://github.com/WormBase/website/issues/5092 * Discussion on making available on WormBase the chapters we wrote for the WormBook.
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  • WS169
    <pre>New release of WormBase WS169, Wormpep169 and Wormrna169 Fri Dec 22 15:09:52 GMT 2006 ...map_positions.WS169.gz - Interpolated map positions for each coding/RNA gene
    8 KB (787 words) - 10:56, 21 December 2011
  • WormBase-Caltech Weekly Calls October 2016
    * First draft up on WormBase development site ...notate to higher level (cell/anatomy function) and lower level (individual gene product function)? There may be, but all of this information is valuable
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  • WormBase-Caltech Weekly Calls March 2012
    *Example: If a gene is involved in a function or process, where in the cell does this take plac *WormBase curates phenotypes, pathways, etc.
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  • Pristionchus pacificus
    ...r00031139]). The P pacificus laboratory strain [http://www.wormbase.org/db/gene/strain?name=PS312;class=Strain PS312], used for genomic sequencing, was iso ...ution of hermaphroditism. ''BMC Evol Biol''&nbsp; '''7''':104 ([http://www.wormbase.org/db/misc/paper?name=WBPaper00030826;class=Paper WBPaper00030826])
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  • WormBase Model:Sequence
    [[WormBase Models]] == Model ==
    12 KB (1,258 words) - 09:29, 5 October 2010
  • WormBase-Caltech Weekly Calls January 2019
    === Gene descriptions === Title: WormBase 2019 - Data, Tools and Community Curation
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  • Website:Mobile
    A Backbone.js + jQuery Mobile app for accessing the Wormbase database through its RESTful API. wormbase-mobile
    5 KB (769 words) - 15:16, 19 June 2014
  • WS200
    New release of WormBase WS200, Wormpep200 and Wormrna200 Tue Feb 24 12:51:18 GMT 2009 ...map_positions.WS200.gz - Interpolated map positions for each coding/RNA gene
    6 KB (722 words) - 16:43, 21 December 2011
  • WormBase-Caltech Weekly Calls July 2013
    *Getting real-time updates of gene list for genes in OA ...from nameserver: cgc name, public names, sequence name, live/dead status, gene IDs
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  • Old pipeline for disease data
    ...e. This is similar to a gene being attached to more than one GO term. If a gene needs to be attached to a unrelated disease, enter all data on a new line, '''Field 4 Experimental model for (dis_humandoid):''' <br/ >
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  • WormBase-Caltech Weekly Calls March 2013
    Gene Concise Description form *Prepopulation: Display all (key?) experimental info on gene from WormBase, some Textpresso info like "ABC-1 encodes..."
    7 KB (1,047 words) - 15:34, 4 April 2013
  • WS207
    New release of WormBase WS207, Wormpep207 and Wormrna207 Mon Sep 28 11:47:26 BST 2009 ...map_positions.WS207.gz - Interpolated map positions for each coding/RNA gene
    6 KB (675 words) - 16:42, 21 December 2011
  • WormBase-Caltech Weekly Calls May 2014
    === WormBase Ontology Browser (WOBr) === * http://juancarlos.wormbase.org/tools/ontology_browser
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  • WBConfCall 2015.06.18-Agenda and Minutes
    ...ZCX1hZ3b-vDdWB4KjIvieALc_GLnYqYCTqnMaJ7Rg/edit (Need to be logged in with WormBase google account to edit it). === WormBase Workshop roll call ===
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  • WBConfCall 2020.10.01-Agenda and Minutes
    ===WormBase Webinars=== * Current schedule: https://wiki.wormbase.org/index.php/Meetings#2020_-_2021_WormBase_Webinars
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  • WormBase-Caltech Weekly Calls November 2012
    *JD Wong started at WormBase this week; will focus on building WormBase instance of Intermine *Once in place, we can build pre-canned queries that we can embed in WormBase pages (maybe in response to help desk inquiries)
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  • Evidence Code Ontology
    ...ontology/evidenceontology The Evidence and Conclusion Ontology] is used in WormBase to record evidence used for assertions in curation data models. ...ence and Conclusion Ontology will be incorporated into a future release of WormBase, aiming for WS278, and is proposed to eventually fully replace ?GO_code.
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  • WormBase-Caltech Weekly Calls February 2015
    * What implications does this have for the WormBase Ontology Browser? * WormBase has imported all worm (C. elegans) physical (protein-protein) interactions
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  • WormBase-Caltech Weekly Calls June 2016
    * Wen will create ticket to create wormbase.org URL * Working on mapping fosmids to latest release of WormBase
    8 KB (1,224 words) - 15:34, 21 July 2016
  • WormBase-Caltech Weekly Calls June 2015
    * I could not find an ontology that was ready built to adopt; few genetic model organisms, of those, FB has the most useful. Other mods use controlled voca * Requested model change for WS250 with new terms.
    6 KB (982 words) - 15:33, 2 July 2015
  • WBConfCall 2012.06.21-Agenda and Minutes
    ...cycle. Please review the file [http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?revision=1.376&root=ensembl&view=markup models.wrm] in the Reporter 3_UTR ?Gene
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  • WBConfCall 2016.01.07-Agenda and Minutes
    http://wiki.wormbase.org/index.php/2016_Advisory_Board_Meeting#Organisation_of_SAB_talks ==2. WormBase exhibit at the GSA meeting Dev., Cell Bio and Gene Expression Meeting==
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  • WormBase-Caltech Weekly Calls December 2011
    Interaction model WormBase meeting announcement
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  • WormBase-Caltech Weekly Calls February 2021
    * Any more comments about the Wiki page and the proposal? https://wiki.wormbase.org/index.php/WormBase_gene_association_file * Will change ?Expr_pattern model to possibly remove ?Author reference and add in a ?Person reference instead
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  • WormBase-Caltech Weekly Calls August 2013
    *Gene IDs can be found from original paper or data set AMIGO2 (Wormbase Ontology Browser)
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  • WS107
    <pre>New release of WormBase WS107, Wormpep107 and Wormrna107 Fri Aug 8 13:44:00 BST 2003 ...map_positions.WS107.gz - Interpolated map positions for each coding/RNA gene
    6 KB (659 words) - 11:17, 21 December 2011
  • WormBase-Caltech Weekly Calls February 2016
    * We will need to learn to model in Datomic to start building curation tools that run off of Datomic ...ill want to build a curation tool directly on top of Datomic; will need to model currently un-dumped fields in Datomic
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  • WormBase-Caltech Weekly Calls October 2013
    === WormBase Ontology Browser (WOBr) === ...erver for the information the browser queries: gene ontology associations, gene association files
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  • WormBase-Caltech Weekly Calls June 2019
    *** Updated automated gene concise descriptions? * Progress being made within the Alliance to update the automated concise gene descriptions
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  • WBConfCall 2021.02.18-Agenda and Minutes
    * WBPaper00026596.ce.mr.csv content incorrect: https://github.com/WormBase/website/issues/8101 * Eduardo has the data and can produce gene/cell-specific outputs.
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  • User Guide 2010:TOC
    ...a of the model nematode ''Caenorhabditis elegans'' and related nematodes. WormBase is developed by an international consortium of researchers and computer sci *[[UserGuide:General_Description|Overview of WormBase]]
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  • WormBase-Caltech Weekly Calls July 2011
    *WormBase - Bitbucket, GitHub (can commit code) *Is WormBase interested connecting to it?
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  • WormBase-Caltech Weekly Calls May 2017
    * GO-CAM (Gene Ontology - Causal Activity Model(ing)) ...rds, tool could pull up all relevant annotations to help start with GO CAM model building
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  • WS221
    New release of WormBase WS221, Wormpep221 and Wormrna221 Tue Nov 23 12:32:16 GMT 2010 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data
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  • WS142
    <pre>New release of WormBase WS142, Wormpep142 and Wormrna142 Fri Apr 15 18:22:51 BST 2005 ...map_positions.WS142.gz - Interpolated map positions for each coding/RNA gene
    7 KB (720 words) - 11:09, 21 December 2011
  • WS131
    <pre>New release of WormBase WS131, Wormpep131 and Wormrna131 Tue Sep 7 15:06:49 BST 2004 ...map_positions.WS131.gz - Interpolated map positions for each coding/RNA gene
    6 KB (669 words) - 11:18, 21 December 2011
  • WormBase-Caltech Weekly Calls April 2012
    *GeneWiki for human gene annotation **One page for each gene; already have ~10,000 articles
    7 KB (1,158 words) - 17:20, 3 May 2012
  • WS223
    New release of WormBase WS223, Wormpep223 and Wormrna223 Mon Jan 24 12:12:08 GMT 2011 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data
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  • WBConfCall 2013.11.07-Agenda and Minutes
    [[WS241_Models.wrm | WS241 model details]] ...ne_cluster - Karen would like to use this underused class for phylogenetic gene clusters
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  • WormBase-Caltech Weekly Calls July 2012
    *Focus on: Gene function, transcriptional networks, pathways *Try to use GO annotations to make more expressive statements about gene function, pathways and processes
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  • WS135
    <pre>New release of WormBase WS135, Wormpep135 and Wormrna135 Thu Nov 11 13:32:31 GMT 2004 ...map_positions.WS135.gz - Interpolated map positions for each coding/RNA gene
    6 KB (689 words) - 11:19, 21 December 2011
  • WS227
    New release of WormBase WS227 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
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  • Using github
    2. Find and follow the repo WormBase/website project: https://github.com/WormBase/website
    3 KB (528 words) - 09:52, 22 June 2012
  • TransgeneOme import
    WormBase will import expression data (Images, constructs, and annotations) from the ...original data is always present on the Max Planck Institute (MPI) website. WormBase will fetch the data periodically (Release-basis) to have the collection up-
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  • WS211
    <pre>New release of WormBase WS211, Wormpep211 and Wormrna211 Fri Jan 29 13:26:05 GMT 2010 ...map_positions.WS211.gz - Interpolated map positions for each coding/RNA gene
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  • WormBase-Caltech Weekly Calls February 2018
    === Automated gene descriptions - orthology === * WormBase uses EnsemblCompara and other methods (not aggregate method like DIOPT)
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  • WormBase-Caltech Weekly Calls July 2020
    ===Gene names issue in SimpleMine and other mining tools=== *Wen: Last week, Jonathan Ewbank raised the issue of gene names that may refer to multiple objects.
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  • WBConfCall 2017-09-06-Agenda and Minutes
    ** Should have a guide for users [http://www.wormbase.org/about/Frequently_asked_questions#f--10 Here] * User needs WormBase official response.
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  • WormBase-Caltech Weekly Calls January 2015
    ...n received latest update, CGC very busy with strains generated through new gene engineering techniques Main outline [https://docs.google.com/a/wormbase.org/document/d/1l6pExlCMI88pi_-djk8jt7IzNsMDV-nIEY9Z1gBNh-A/edit here]- not
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  • WS222
    New release of WormBase WS222, Wormpep222 and Wormrna222 Mon Dec 20 12:07:08 GMT 2010 WS222 was built by Michael Paulini (michael.paulini@wormbase.org)
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  • WormBase-Caltech Weekly Calls April 2011
    Transgene Model *Kimberly working on Physical Interaction model
    7 KB (1,103 words) - 18:28, 5 May 2011
  • WS228
    New release of WormBase WS228 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
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  • Software Life Cycle: 1. Updating The Development Server
    https://docs.google.com/a/wormbase.org/document/d/1oPpj8d5gibUc-gpUZorl6ETT5baE6mp-v2bMedKauiA/edit# This document describes the process of staging a new release of WormBase on the development server.
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  • WormBase-Caltech Weekly Calls May 2013
    *Dumping process changes outlined [https://docs.google.com/a/wormbase.org/document/d/1nnuQY9OfV2VsBORj01ocoC985-5kOgxYCGOAZDeeKLQ/edit?pli=1 here *****JD started a [http://wiki.wormbase.org/index.php/WormMine Wiki Page] for documentation
    6 KB (864 words) - 15:32, 6 June 2013
  • WS127
    <pre>New release of WormBase WS127, Wormpep127 and Wormrna127 Tue Jul 6 13:12:51 BST 2004 ...map_positions.WS127.gz - Interpolated map positions for each coding/RNA gene
    7 KB (872 words) - 11:18, 21 December 2011
  • Updating go.ace file
    *Update spelling to Descendant in ?GO_term model *Model changes - added Status and Synonym tags.
    15 KB (1,936 words) - 16:29, 29 June 2018
  • WormBase-Caltech Weekly Calls July 2018
    === Model changes === * SAB suggested continuing site visits for WormBase tutorials
    7 KB (1,062 words) - 14:41, 2 August 2018
  • WormBase-Caltech Weekly Calls June 2012
    **Chris will add all model changes proposed for WS233 **?Interaction model "Rearrangement" tag needs an XREF and ?Rearrangement model needs an "Interactor" tag
    6 KB (983 words) - 18:02, 12 July 2012
  • WS217
    New release of WormBase WS217, Wormpep217 and Wormrna217 Wed Jul 28 09:25:17 BST 2010 ...map_positions.WS217.gz - Interpolated map positions for each coding/RNA gene
    8 KB (915 words) - 11:10, 21 December 2011
  • WormBase-Caltech Weekly Calls November 2018
    * Todd working on a spell.wormbase.org site for doing worm SPELL analyses === Expression Pattern Model ===
    6 KB (906 words) - 15:34, 6 December 2018
  • WS225
    New release of WormBase WS225, Wormpep225 and Wormrna225 Tue Apr 5 11:57:03 BST 2011 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data
    16 KB (1,674 words) - 11:38, 20 April 2011
  • WormBase Model:Gene cluster
    [[WormBase Models]] == Model ==
    15 KB (1,645 words) - 18:54, 23 January 2014
  • WS202
    New release of WormBase WS202, Wormpep202 and Wormrna202 Tue Apr 28 16:02:08 BST 2009 ...map_positions.WS202.gz - Interpolated map positions for each coding/RNA gene
    6 KB (770 words) - 11:06, 21 December 2011
  • WS231
    New release of WormBase WS231 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    16 KB (1,820 words) - 14:15, 13 September 2012
  • WormBase-Caltech Weekly Calls April 2015
    ** For list of files, see: ftp://ftp.sanger.ac.uk/pub/consortia/wormbase/STAFF/mh6/nightly_geneace/ === WormBase Ontology Browser WS248 online on Dev ===
    8 KB (1,147 words) - 15:33, 7 May 2015
  • WS218
    New release of WormBase WS218, Wormpep218 and Wormrna218 Tue Aug 24 genomes DIR - contains a sub dir for each WormBase species with
    15 KB (1,756 words) - 11:21, 21 December 2011
  • WormBase-Caltech Weekly Calls April 2019
    * Make modification to ACEDB model? ...ence is held at Université de Montréal on June 2-5, 2019 and will focus on Model systems in cancer research (https://www.fourwav.es/view/1174/info/). The C.
    11 KB (1,676 words) - 15:28, 2 May 2019
  • WS234
    New release of WormBase WS234 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:
    15 KB (1,653 words) - 10:13, 18 January 2013
  • WormBase-Caltech Weekly Calls September 2013
    === Gene ACE Dumps === *Looked at gene objects specifically
    8 KB (1,225 words) - 16:33, 3 October 2013
  • WS224
    New release of WormBase WS224, Wormpep224 and Wormrna224 Fri Mar 4 14:58:13 GMT 2011 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data
    15 KB (1,583 words) - 11:13, 21 December 2011
  • Migration
    -rwxrwxr-x 1 todd wormbase 20053 Jul 6 14:06 cell.cgi -rwxrwxr-x 1 todd wormbase 3916 Jul 6 14:06 make_pedigree.cgi
    16 KB (1,576 words) - 17:44, 16 August 2010
  • WS117
    <pre>New release of WormBase WS117, Wormpep117 and Wormrna117 Tue Jan 20 10:22:06 GMT 2004 ...map_positions.WS117.gz - Interpolated map positions for each coding/RNA gene
    6 KB (695 words) - 11:17, 21 December 2011
  • Using bitbucket
    2. Find and follow the tharris/wormbase project: http://bitbucket.org/tharris/wormbase/
    4 KB (616 words) - 18:35, 17 August 2010

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