WormBase Model:Phenotype info
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Curator Comments/Description
Usage hard to work out as tag counts don't work in hashes.
Model
////////////////////////////////////////////
//
// ?Phenotype_info Class
//
////////////////////////////////////////////
#Phenotype_info Paper_evidence ?Paper
Person_evidence ?Person
Curator_confirmed ?Person
Remark ?Text #Evidence // specific remarks about the phenotype
Quantity_description ?Text #Evidence //Remark to describe what quantity describes, below
Quantity UNIQUE Int UNIQUE Int #Evidence
Not #Evidence //This is being phased out but is needed for the next phase [06/08/10].
Anatomy_term ?Anatomy_term #Evidence
Penetrance Incomplete Text #Evidence
Low Text #Evidence
High Text #Evidence
Complete Text #Evidence
Range UNIQUE Int UNIQUE Int #Evidence // Range of penetrance
Recessive #Evidence
Semi_dominant #Evidence
Dominant #Evidence
Haplo_insufficient #Evidence
Caused_by ?Gene #Evidence
Caused_by_other ?Text #Evidence
Loss_of_function UNIQUE Hypomorph #Evidence
Amorph #Evidence
Uncharacterised_loss_of_function #Evidence
Gain_of_function UNIQUE Dominant_negative #Evidence
Hypermorph #Evidence
Neomorph #Evidence
Uncharacterised_gain_of_function #Evidence
Other_allele_type UNIQUE Wild_type #Evidence
Isoallele #Evidence
Mixed #Evidence
Affected_by Molecule ?Molecule #Evidence // ?Molecule model Karen Yook
Temperature_sensitive Heat_sensitive Text #Evidence
Cold_sensitive Text #Evidence
Maternal UNIQUE Strictly_maternal #Evidence
With_maternal_effect #Evidence
Paternal #Evidence
Phenotype_assay Life_stage ?Life_stage #Evidence
Strain ?Strain #Evidence
Treatment ?Text #Evidence
Temperature ?Text #Evidence
Genotype ?Text #Evidence
Proposed Changes
unused tags
Approved Changes
WS231
Rescued_by_transgene ?Transgene//added
Ease_of_scoring UNIQUE ES0_Impossible_to_score
ES1_Very_hard_to_score
ES2_Difficult_to_score
ES3_Easy_to_score
WS219
?Phenotype //added by Wen for Not observed phenotypes
Not_in_RNAi ?RNAi XREF Phenotype_not_observed
Not_in_Variation ?Variation XREF Phenotype_not_observed
Not_in_Strain ?Strain XREF Phenotype_not_observed
Not_in_Transgene ?Transgene XREF Phenotype_not_observed
Not_in_Rearrangement ?Rearrangement XREF Phenotype_not_observed
XREFs from ?Phenotype above ?RNAi, ?Variation, ?Strain, ?Transgene, ?Rearrangement
Phenotype_not_observed ?Phenotype XREF Not_in_Rearrangement #Phenotype_info
Phenotype_not_observed ?Phenotype XREF Not_in_Strain #Phenotype_info
Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info
Phenotype_not_observed ?Phenotype XREF Not_in_RNAi #Phenotype_info
Phenotype_not_observed ?Phenotype XREF Not_in_Variation #Phenotype_info
