WormBase Model:WBProcess

WormBase Models

Curator Comments/Description

Approved for WS225.

Model

 //////////////////////////////////////////////////
 //
 // WBProcess class Model - Proposed by Karen Yook WS225
 // Connects to: ?Gene
 //              ?Expression_cluster
 //              ?Interaction
 //              ?Anatomy_term
 //              ?Life_stage
 //              ?Molecule
 //              ?Phenotype
 //
 //////////////////////////////////////////////////	
 
 ?WBProcess      Name  ?Text
                 Summary ?Text #Evidence
                 Process_term ?Text
                 Other_name ?Text
                 Related_process ?WBProcess XREF Related_process
                 Taxon   NCBITaxonomyID ?Text
                 Involved_entity         Gene ?Gene XREF WBProcess #Evidence  
                                         Expression_cluster ?Expression_cluster XREF WBProcess  #Evidence
                                         Interaction ?Interaction XREF WBProcess #Evidence
                                         Anatomy_term ?Anatomy_term XREF WBProcess #Evidence
                                         Life_stage ?Life_stage XREF WBProcess #Evidence 
                                         Molecule ?Molecule XREF WBProcess #Evidence 
                 Associated_with         Phenotype ?Phenotype XREF WBProcess #Evidence
                                         GO_term ?GO_term  #Evidence
                 Picture ?Picture #Evidence
                 Movie ?Movie  #Evidence
                 Pathway DB_info Database ?Database_field ?Accession_number //Can be used for any pathway db with unique accessionIDs
                 Remark ?Text #Evidence
                 Reference ?Paper XREF WBProcess

Additions to XREF'd classes:
---------------------------
 	WBProcess ?WBProcess XREF Gene #Evidence
 	WBProcess ?WBProcess XREF Interaction
 	WBProcess ?WBProcess XREF Anatomy_term
 	WBProcess ?WBProcess XREF Life_stage
 	WBProcess ?WBProcess XREF Phenotype
 	WBProcess ?WBProcess XREF Expression_cluster #Evidence
 	WBProcess ?WBProcess XREF Reference
 	WBProcess ?WBProcess XREF Molecule

Proposed Changes

WS243

change Related_process ?WBProcess XREF Related_process to

Related_process Specialisation_of ?WBProcess XREF Generalisation_of
                Generalisation_of ?WBProcess XREF Specialisation_of

Approved Changes

WS236

DO_term ?DO_term #Evidence //From new class ?Gene and Disease Ontology

WS233

 Summary ?Text #Evidence //Added to store summary display details and evidence tracking.
 Public_name //Again a text addition for display purposes.
 Pathway DB_info Database ?Database ?Database_field ?Accession_number //Can be used for any pathway db with unique accessionIDs