Search results
From WormBaseWiki
Jump to navigationJump to searchCreate the page "WormBase Model:?Person" on this wiki! See also the search results found.
Page title matches
- [[WormBase Models]] == Model ==3 KB (272 words) - 16:10, 4 October 2010
- [[WormBase Models]] == Model ==603 bytes (70 words) - 08:21, 5 October 2010
Page text matches
- [[WormBase Models]] == Model ==603 bytes (70 words) - 08:21, 5 October 2010
- [[WormBase Models]] == Model ==3 KB (272 words) - 16:10, 4 October 2010
- [[WormBase Models]] == Model ==1 KB (140 words) - 14:00, 4 October 2010
- [[WormBase Models]] == Model ==2 KB (184 words) - 08:38, 17 August 2010
- ...ist of the most prominent classes in use in the AceDB database employed by WormBase. To display the current model of any class, include the following text in your documentation:4 KB (568 words) - 11:06, 23 May 2011
- [[WormBase Models]] == Model ==715 bytes (81 words) - 11:06, 10 August 2010
- 1. Moving forward with Alliance-friendly Person pages for community curation/authorship tracking<br> ...already exists made by Adam http://dev.alliancegenome.org:11223/redoc#tag/Person2 KB (325 words) - 15:24, 7 October 2021
- [[WormBase Models]] == Model ==3 KB (318 words) - 00:53, 7 December 2010
- [[WormBase Models]] == Model ==3 KB (265 words) - 08:51, 5 October 2010
- [[WormBase Models]] == Model ==5 KB (352 words) - 17:20, 25 September 2015
- ** During the call earlier we talked about the ?Paper model having *** Person ?Person3 KB (492 words) - 18:48, 17 March 2021
- == Model Changes == History First_WS_release Int // first WormBase release this assembly was used3 KB (306 words) - 10:00, 26 October 2011
- [[WormBase Models]] Updated model and unused tags for WS245 elegans data from pre-merged BUILD/elegans databa4 KB (394 words) - 08:39, 16 September 2014
- ==BioLink ML model example == Discussions around how the BioLink model could work for us, and how it could be implemented in different types of da3 KB (487 words) - 16:36, 18 March 2021
- [[WormBase Models]] == Model ==1 KB (104 words) - 10:38, 10 August 2010
- == The A - Z of Ace Model and Redesign Page == ...ndex of available Ace classses; see the [https://spreadsheets.google.com/a/wormbase.org/ccc?key=tygSYCz49YW5hyCcYMHUZ1Q#gid=2 Google Doc] for migration status.12 KB (1,559 words) - 18:14, 15 June 2011
- [[WormBase Models]] == Model ==921 bytes (110 words) - 10:59, 10 August 2010
- [[WormBase Models]] == Model ==5 KB (471 words) - 16:07, 4 October 2010
- [[WormBase Models]] ''Pick_me_to_call'' -- untouched from existing model3 KB (320 words) - 10:55, 10 December 2010
- 2. Find and follow the tharris/wormbase project: http://bitbucket.org/tharris/wormbase/4 KB (616 words) - 18:35, 17 August 2010
- * WBPaper00026596.ce.mr.csv content incorrect: https://github.com/WormBase/website/issues/8101 **Alliance/Future of WormBase3 KB (511 words) - 18:54, 18 February 2021
- === Institution tag in ?Person class === * Cecilia gets data from papers (affiliation) and direct person submission.4 KB (633 words) - 19:09, 6 January 2015
- [[WormBase Models]] == Model ==8 KB (853 words) - 23:50, 16 April 2014
- ** Should WormBase provide authoritative info about modENCODE data? Something to consider == WormBase Slack Team ==3 KB (420 words) - 16:02, 17 August 2017
- * [https://github.com/WormBase/website/issues/8008 egl-1 automated gene description] * [https://github.com/WormBase/website/issues/8006 We have identified from RNAseq....]2 KB (239 words) - 17:32, 3 December 2020
- * Chrome failing to download ftp data [https://github.com/WormBase/website/issues/8087 #8087] ** Harmonized Alliance model would be persistent and integrated.4 KB (743 words) - 12:22, 5 March 2021
- 2. Find and follow the repo WormBase/website project: https://github.com/WormBase/website3 KB (528 words) - 09:52, 22 June 2012
- ...s are being dealt with or closed, except github ticket [https://github.com/WormBase/website/issues/8156| #8156] * https://github.com/WormBase/website/issues/8156 - - needs a reply from textpresso group -Valerio will t4 KB (709 words) - 13:27, 5 April 2021
- === WormBase Ontology Browser (WOBr) for WS244 release === * Final data model may still need refinement?6 KB (801 words) - 17:29, 2 July 2014
- Ticket: https://github.com/WormBase/website/issues/8296 Issue: Genetic Map tool down with the following error: Caught exception in WormBase::Web::Controller::Tools->tools "Could not connect to database acedb _WS280,2 KB (347 words) - 14:07, 2 July 2021
- Transgene Model *Kimberly working on Physical Interaction model7 KB (1,103 words) - 18:28, 5 May 2011
- ;item 3 - Interaction Model (slides 4-5, attached .ppt in documents distributed section) #Gary S named as contact person for BioGRID curators.3 KB (475 words) - 22:50, 17 December 2010
- [[WormBase-Caltech_Weekly_Calls_January_2022|January]] [[WormBase-Caltech_Weekly_Calls_February_2022|February]]10 KB (1,547 words) - 21:31, 2 January 2024
- [[WormBase Models]] == Model ==10 KB (1,176 words) - 22:24, 18 March 2014
- * Added link in WBPerson term info to Person page with publications showing ...is that someone may abuse the form and send a bunch of junk to some random person's e-mail address6 KB (982 words) - 15:33, 2 July 2015
- Curators checked their model proposals in this file: WS241 pre-WS241 tagged models [[http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?revision=1.396&root=ensembl&view=markup pre-WS241]]6 KB (909 words) - 21:56, 21 November 2013
- New release of WormBase WS181, Wormpep181 and Wormrna181 Fri Sep 7 11:40:20 BST 2007 http://www.wormbase.org/wiki/index.php/Release_notes8 KB (885 words) - 16:47, 21 December 2011
- <http://www.wormbase.org/db/gene/gene?name=mpk-1;class=Gene><br> <http://www.wormbase.org/db/gene/gene?name=F43C1.1;class=Gene><br>14 KB (2,365 words) - 21:14, 23 July 2013
- [[WormBase Models]] == Model ==7 KB (712 words) - 10:40, 4 October 2010
- ...Karen, others are welcome. Visit the construct model requests [http://wiki.wormbase.org/index.php/WormBase_Model:Construct here] ...arned enough Catalyst to create a workable ontology browser on the caltech wormbase sandbox.10 KB (1,583 words) - 18:16, 5 February 2014
- The WS126 release of WormBase last month featured a complete genome with no gaps remaining in the genome == WormBase launches the 'WormBook' project ==4 KB (621 words) - 15:38, 24 September 2007
- = The A - Z of WormBase Models = Document created from [http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?root=ensembl&view=markup&pathrev=WS218 WS218] models.16 KB (2,207 words) - 23:06, 9 January 2014
- Model in place, but data not yet migrated, but will be in place with WS221. [[Browser_Support_Statement|WormBase Browser Support statement]]1 KB (199 words) - 20:57, 3 November 2010
- Model changes to ?Gene and ?Transposon I'd like to change tags in the ?Gene model and #Gene_history_action hash.8 KB (1,073 words) - 15:31, 14 December 2012
- [[WormBase Models]] ==Updated model for WS245==13 KB (1,341 words) - 20:12, 22 September 2015
- [[WS241_Models.wrm | WS241 model details]] * ?Person class - Database tag added for ORCID8 KB (1,246 words) - 15:52, 12 November 2013
- *Wormbase can push ahead with a pilot test *At Biocurator meeting, Karen met with Marc Gillespie to figure out how WormBase could best work with Reactome6 KB (944 words) - 16:25, 1 November 2012
- * Any more comments about the Wiki page and the proposal? https://wiki.wormbase.org/index.php/WormBase_gene_association_file ...nge ?Expr_pattern model to possibly remove ?Author reference and add in a ?Person reference instead9 KB (1,377 words) - 16:36, 4 March 2021
- * ?Construct model === ?Construct model ===8 KB (1,218 words) - 17:46, 2 April 2014
- === Person evidence vs Publication evidence === ...that information is captured and entered with the submitter of the data as person evidence.15 KB (2,374 words) - 16:00, 17 July 2014
- Person Cytoscape *Person-person network viewing on website8 KB (1,161 words) - 16:34, 7 March 2013
- *Yuling should contact FlyBase to make sure they're OK, once he has WormBase SVM working Physical interaction model7 KB (1,064 words) - 19:12, 3 November 2011
- ** Maybe best, once new ?Phenotype_experiment model is in place, to just refer to perturbed gene === WormBase grant ===6 KB (912 words) - 01:40, 15 September 2017
- New release of WormBase WS221, Wormpep221 and Wormrna221 Tue Nov 23 12:32:16 GMT 2010 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data17 KB (1,758 words) - 16:47, 21 December 2011
- * Issue for WBPaper00048704: https://wormbase.org/resources/paper/WBPaper00048704#0--10 * First author is "Li, C" as in PubMed (correct name) in WormBase as "Chun, L"8 KB (1,189 words) - 14:10, 5 July 2018
- * Karen asked Raymond/Gary and any other person interested in the group to help with pharyngeal phenotype term organization * We should remove underscores from "is_model_of" and translate to "is a model of"7 KB (1,073 words) - 16:26, 2 March 2017
- * Karen will need to become part time at WormBase (needs to be more than half time on SBIR) * Want clear, granular evidence for each assertion in a model, but need to accommodate probabilistic statements10 KB (1,527 words) - 15:32, 6 April 2017
- ==Movie Data Model== ...ting the Piano study. Detailed info on Lario: /Users/danielaraciti/Desktop/Wormbase/Movies/Movies revamp.txt5 KB (814 words) - 18:48, 17 September 2018
- http://wiki.wormbase.org/index.php/2016_Advisory_Board_Meeting#Organisation_of_SAB_talks ==2. WormBase exhibit at the GSA meeting Dev., Cell Bio and Gene Expression Meeting==7 KB (1,249 words) - 17:23, 7 January 2016
- * adding a Community_curator tag or Curator tag in the Expression model to acknowledge the community curators that annotated/will annotate the data * for the records- documentation on the import here: http://wiki.wormbase.org/index.php/TransgeneOme_import9 KB (1,490 words) - 15:35, 6 October 2016
- New release of WormBase WS175, Wormpep175 and Wormrna175 Fri May 4 16:29:43 BST 2007 http://www.wormbase.org/wiki/index.php/Release_notes6 KB (680 words) - 10:54, 21 December 2011
- New release of WormBase WS220, Wormpep220 and Wormrna220 Mon Oct 25 13:22:36 BST 2010 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data16 KB (1,762 words) - 11:10, 21 December 2011
- AMIGO2 (Wormbase Ontology Browser) ...ken AMIGO2 infrastructure to make an ontology browser for integration into WormBase5 KB (850 words) - 15:32, 5 September 2013
- Dear Dr. Kishore, Harris, Cain, Raciti, van Auken and all Wormbase staff, ...shop for the upcoming worm meeting in Glasgow entitled “expanding the worm model repertoire”, which will focus on research done in worms other than C. ele4 KB (657 words) - 17:19, 15 June 2023
- <pre>New release of WormBase WS196, Wormpep196 and Wormrna196 Fri Oct 31 16:00:42 GMT 2008 http://www.wormbase.org/wiki/index.php/Release_Schedule6 KB (748 words) - 16:41, 21 December 2011
- === WormBase Ontology Browser (WOBr) === === ?Expr_pattern and ?Movie model changes ===13 KB (1,983 words) - 16:40, 7 November 2013
- *Have one person volunteer to look at potential problems for a particular page? *Make link on WormBase homepage5 KB (752 words) - 17:07, 7 July 2011
- ...just know what are problematic URLs; should all be handled by main URL www.wormbase.org === Disease model annotation class display ===11 KB (1,703 words) - 15:27, 5 April 2018
- * 3 servers stored in Braun server room; is there a new contact person for accessing these servers? * Automated person descriptions?11 KB (1,782 words) - 17:55, 13 May 2021
- * What implications does this have for the WormBase Ontology Browser? * WormBase has imported all worm (C. elegans) physical (protein-protein) interactions8 KB (1,120 words) - 16:19, 5 March 2015
- * Citace upload deadline will be 6pm Monday, November 25th (added to WormBase calendar) * We will want to provide a public notice (likely via the WormBase blog) about what topic we have focused on for that release of the database/10 KB (1,664 words) - 17:02, 4 December 2013
- http://www.wormbase.org/wiki/index.php/Release_notes Confirmed introns not in a CDS gene model;8 KB (938 words) - 10:54, 21 December 2011
- * Would be good to meet with individual labs and lab members to discuss WormBase ...al to make Remark entry unique; Raymond asking to remove the UNIQUE in the model11 KB (1,664 words) - 16:29, 7 December 2017
- == WormBase Version Freeze == ...WormBase, e. g., WS100 (http://ws100.wormbase.org) and WS110 (http://ws110.wormbase.org). These reference releases are available for perpetuity on dedicated se10 KB (1,509 words) - 15:40, 24 September 2007
- === GO data model change === * Worm pick holders (pencil grips) with WormBase logos; can they be printed on?7 KB (1,058 words) - 15:32, 2 April 2015
- == RNAi Data Model == This is the ?RNAi data model as of WormBase Release WS251:29 KB (4,152 words) - 20:29, 30 July 2019
- *JD Wong started at WormBase this week; will focus on building WormBase instance of Intermine *Once in place, we can build pre-canned queries that we can embed in WormBase pages (maybe in response to help desk inquiries)7 KB (1,123 words) - 16:39, 6 December 2012
- ...m of 3 people in WormBase rooms at a time; probably best to only allow one person per WB room * We plan to eventually connect strains to genotypes, but need model changes and curation effort to sort out8 KB (1,228 words) - 20:57, 14 July 2020
- ...ZCX1hZ3b-vDdWB4KjIvieALc_GLnYqYCTqnMaJ7Rg/edit (Need to be logged in with WormBase google account to edit it). === WormBase Workshop roll call ===9 KB (1,431 words) - 23:32, 23 June 2015
- Ranjana - Preplanning WormBase side meetings at IWM? *Two Wormbase Plenary talks9 KB (1,302 words) - 16:38, 2 June 2011
- WormBase will import expression data (Images, constructs, and annotations) from the ...original data is always present on the Max Planck Institute (MPI) website. WormBase will fetch the data periodically (Release-basis) to have the collection up-11 KB (1,190 words) - 19:16, 26 September 2019
- This page describes the development model used by the web development team at WormBase using git as our version control system. This includes our branching strate ...an in the main WormBase repository, or on a developer's fork. [http://wiki.wormbase.org/index.php/Development_workflow_-_webdev#Branch_stratgey Read more on ou9 KB (1,476 words) - 20:00, 11 August 2014
- ''This is a running list of proposed features at WormBase'' ...human diseases. This is a benefit both to people who use C. elegans as a model system (most grants at least true to touch on the relevance of given projec6 KB (842 words) - 17:01, 21 October 2011
- -rwxrwxr-x 1 todd wormbase 20053 Jul 6 14:06 cell.cgi -rwxrwxr-x 1 todd wormbase 3916 Jul 6 14:06 make_pedigree.cgi16 KB (1,576 words) - 17:44, 16 August 2010
- ...ble mostly contains legacy information that was imported from the CGC when WormBase starting curating paper data, as PubMed currently does not curate all autho ...author_id in pap_author_possible and pap_author_verified, and whether that person was SENT an email to verify their connection.25 KB (3,238 words) - 16:42, 8 November 2019
- ...ity scientific findings directly to a well established central repository (WormBase). Data will be publically shared and could be mined alongside data curated ...localization experiments (e.g. ISH, smFISH, immunohistochemistry). If the model will prove to be successful, we will scale it up to include submission of o21 KB (3,194 words) - 02:08, 17 May 2018
- [[WormBase Models]] == Model ==15 KB (1,645 words) - 18:54, 23 January 2014
- ** For list of files, see: ftp://ftp.sanger.ac.uk/pub/consortia/wormbase/STAFF/mh6/nightly_geneace/ === WormBase Ontology Browser WS248 online on Dev ===8 KB (1,147 words) - 15:33, 7 May 2015
- ==Antibody Model== Person ?Person21 KB (2,888 words) - 19:58, 9 April 2021
- Main outline [https://docs.google.com/a/wormbase.org/document/d/1l6pExlCMI88pi_-djk8jt7IzNsMDV-nIEY9Z1gBNh-A/edit here]- not [https://docs.google.com/a/wormbase.org/document/d/1mAxrqVIhxDNpkTUBmtu12sAo58pEG763tgASlzy-3JU/ here]10 KB (1,453 words) - 18:52, 4 February 2015
- ...ed ?Physical_interaction model has also been consolidated into this larger model. Note that #Interaction_info and #Interaction_type have been deprecated. WBProcess ?WBProcess XREF Interaction // WormBase biological process associated with the interaction53 KB (6,521 words) - 20:51, 7 March 2019
- * Make modification to ACEDB model? ...l depend on the number of participants but will be between 35 and 50 $ per person (it will cover the costs of lunch, coffee break and logistics).11 KB (1,676 words) - 15:28, 2 May 2019
- New release of WormBase WS227 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:15 KB (1,738 words) - 11:20, 21 December 2011
- ...inding site (for example, a schematic of promoter etc. on the current gene model). * Create a collaborating information center built on top of the WormBase people database, using social network analysis. For instance, you can (idea11 KB (1,649 words) - 16:10, 19 July 2018
- * Testing at juancarlos.wormbase.org (from there go to Tools > Ontology Browser) ** Add a Reactome display to WormBase?10 KB (1,474 words) - 15:54, 30 April 2014
- * Trained a small GPT model with C. elegans literature. Reporting some results. ** Current data model at the ABC has negated as a Boolean (true/false).36 KB (4,994 words) - 17:27, 14 February 2024
- **We could extend the WormBase web app to interact with SPELL data ****WormBase person would check on case-by-case basis the accuracy of data (e.g. expression pat7 KB (1,074 words) - 17:19, 4 October 2012
- *[https://github.com/WormBase/website/issues/6423 Not sure if this falls under content....] *Working on new model for importing RO terms into WormBase14 KB (2,226 words) - 15:31, 7 June 2018
- ...2 way connection table, connects to sender and recipient who is the other person role connecting identified by REV-. * two_old_email -- multi value. (add to Person editor form section to log old_date from time we knew it was current/got da119 KB (18,888 words) - 00:05, 2 May 2014
- New release of WormBase WS226 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:21 KB (2,346 words) - 11:15, 21 December 2011
