WormBase Model:Mass spec experiment
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This gives details of a mass-spectrometry experiment and lists the peptides produced by that experiment.
Model
?Mass_spec_experiment Reference ?Paper XREF Mass_spec_experiment // Describes the experiment
Remark Text #Evidence
Laboratory ?Laboratory // use when a CGC-derived laboratory code is available, else ignore
Contact Person ?Person // use Person where possible, else use Author
Author ?Author
Origin Species UNIQUE ?Species
Strain UNIQUE ?Strain
Genotype ?Text // in many cases the proper strain name is not available, use this instead
Life_stage ?Life_stage
Anatomy_term ?Anatomy_term
Cell_type ?Cell
Sub_cellular_localization Text
Digestion UNIQUE Trypsin
Red_ALK
Ionisation_source UNIQUE MALDI
ESI
Instrumentation UNIQUE IonTrap
FT
QTOF
Database Text // database used to search for matches
Program Text // program used to match MS data against databases
Minimum_ion_proportion UNIQUE Float
Multiple_ambiguous_IDs_allowed
Minimum_peptide_length UNIQUE Int
False_discovery_rate UNIQUE Float // percentage
Mass_spec_peptide ?Mass_spec_peptide XREF Mass_spec_experiments // the resulting peptide data
Proposed Changes
unused tags
Laboratory
Author
Genotype
Anatomy_term
Cell_type
Minimum_ion_proportion
Minimum_peptide_length
