Search results
From WormBaseWiki
Jump to navigationJump to searchCreate the page "Raymond" on this wiki! See also the search results found.
- Raymond: Since these are not published, we can't curate them and that't the main di2 KB (303 words) - 15:59, 4 November 2021
- *Raymond and Wen worked on putting on Amazon cloud *Switch credit cards (from Raymond's to Caltech)6 KB (971 words) - 16:24, 6 October 2011
- The help desk queue includes Raymond Lee, Scott Cain, Karen Yook, Wen Chen, Mark Quinton-Tulloch, Juancarlos Cha |Raymond Lee42 KB (5,348 words) - 16:49, 15 April 2024
- *Raymond will periodically check for "floating" anatomy terms *Paper-anatomy term associations in Citace Minus; Raymond will take care of them6 KB (983 words) - 18:02, 12 July 2012
- ** Raymond - SOBA for GO......simplified GO graph, use for our data2 KB (274 words) - 15:59, 14 May 2018
- ...> what do we want advice on; Kevin -> advice on tools that we don't have?; Raymond -> Trends on data? Curation and UI; Paul -> community annotation, GOCAM, Me ** Raymond -> need to produce a progress report document so that when we make oral pre11 KB (1,898 words) - 16:43, 7 June 2018
- ** Raymond, Ranjana, Gary, Jae and Karen ok to have a monthly digest. Chris, Wen no em * Caltech (Raymond & Juancarlos) will fix6 KB (906 words) - 15:34, 6 December 2018
- ** Raymond (SObA), Chris (Community curation), Mary Ann, Wen would like to go * Raymond and Juancarlos working on9 KB (1,377 words) - 16:44, 2 February 2017
- ...iomedcentral.com/articles/10.1186/s12859-016-1229-9 David Angeles-Albores, Raymond Y. N. Lee, Juancarlos Chan and Paul W. Sternberg, 2016. "Tissue enrichment2 KB (261 words) - 22:27, 5 August 2019
- * Joesph may be able to meet with Raymond Raymond and Eduardo met with Joseph and decided to have the tool running as is for6 KB (903 words) - 15:28, 2 April 2020
- ...gene knockdown phenotypes for more than 100 individual RNAi experiments.||raymond@its.caltech.edu ...e loss in a particular cell lineage leads to loss of mutant rescue, etc. ||raymond@its.caltech.edu13 KB (1,960 words) - 11:07, 21 December 2011
- * Raymond started documentation1 KB (199 words) - 15:33, 31 May 2013
- ...centric pages; gene centric will be geared to comparisons between species; Raymond suggested a landing page for each species; more focused on the the "what" (2 KB (306 words) - 16:32, 3 November 2016
- ** WormBase Ontology Browser - Raymond Lee * Raymond will video workshops to put online at later date. Blog hilights with summar9 KB (1,431 words) - 23:32, 23 June 2015
- * Raymond - will create our own docs3 KB (347 words) - 14:58, 4 June 2013
- === Raymond, Chris and Juancarlos are working on phenotype viewer === * Raymond and Juancarlos working on alternate displays to allow for rapid visual revi8 KB (1,220 words) - 16:26, 3 September 2015
- *On call: Adam, Cecilia, Chris, Daniela, Juancarlos, Karen, Kimberly, Paulo, Raymond, Scott, Sibyl, Todd, Valerio, Wen, Kevin, Paul D, Gary, Matt, Paul K *Raymond: can this change be coordinated with moving to the centralized curation dat5 KB (816 words) - 16:43, 17 May 2018
- *Will let Raymond know if the disease GAFs are okay after they test these for gene descriptio *Raymond needs the GAFs for WoBR4 KB (695 words) - 14:44, 3 December 2020
- *1500 - Genes in region of genetic map - Raymond *1557 - WormMine - unrecognized genes in list - Raymond, Chris6 KB (1,069 words) - 20:52, 23 July 2013
- *Raymond will take precautions to restore properly; should take a week or less *Raymond lifted Todd's directories over to new hard drive7 KB (1,074 words) - 17:19, 4 October 2012
- ** Gene Name Sanitizer (Wen/Raymond/Caltech?) ** Anatomy and Cell (Raymond)5 KB (670 words) - 16:00, 5 August 2021
- * Raymond establishing a WormBase development environment that Juancarlos can use * Todd can give an AMI (?) ID , letting Raymond create an instance8 KB (1,225 words) - 16:33, 3 October 2013
- * will happen in December and Raymond will update the mails * Raymond added some comments above4 KB (688 words) - 17:08, 21 November 2019
- *** Anatomy function -> focus on site of action -> Raymond *** Is the cell lineage browser gone? Yes, lost in the Datomic transition. Raymond: info is in the ontology browser (relationship between nuclei and cells).5 KB (787 words) - 18:10, 25 August 2022
- * Raymond, Gary, Chris interested in going (to join phenotype ontology developers mee2 KB (305 words) - 17:05, 19 April 2018
- *Cell-centric curation: Raymond Lee ([[Media:18-2008-SAB-Lee.ppt|slides]])2 KB (242 words) - 17:09, 6 January 2011
- ...o a summary graph to see it for a different gene. Please send feedback to Raymond, Chris or Juancarlos.6 KB (850 words) - 01:12, 22 August 2015
- * Juancarlos and Raymond working on * Raymond has URL constructor, for private/internal use; will share internally8 KB (1,262 words) - 15:34, 3 May 2018
- ** Raymond looked into the variant data but we don't have additional info. In terms of ...in cell by cell data. How are we going to serve our users with these data? Raymond: what we have right now is an expression profile. This matches with small s6 KB (982 words) - 16:54, 1 September 2022
- *Raymond: once Gary Williams/Michael Paulini send Tier II files, we can incorporate2 KB (303 words) - 09:13, 5 October 2012
- * Raymond trying to annotate axioms for anatomy function * Raymond attempting to use Noctua to draw relationships between anatomy terms and fu8 KB (1,289 words) - 18:11, 10 November 2016
- * What testing of generation of the GAF could be done (and sent to Raymond)? * Raymond will cover WormBase Ontology Browser8 KB (1,120 words) - 16:19, 5 March 2015
- * Raymond: should we go through a two tier process for models?2 KB (296 words) - 01:51, 5 September 2015
- **Raymond: used for code development/versioning by OICR; may be the best use for Bitb *Raymond: WormBase mirrors8 KB (1,282 words) - 17:08, 7 July 2011
- *Karen, Raymond, Chris will talk to Todd Gene interaction dumping script (Raymond/Todd)9 KB (1,302 words) - 16:38, 2 June 2011
- ** Maybe, but should be free text instead of a modeled tag for WBPersons (Raymond) * (Raymond) Two aspects of strain curation: 1) strains that are available (e.g. from C9 KB (1,490 words) - 15:35, 6 October 2016
- ...he reporter class has a text field that can be used for this. Paul/Daniela/Raymond will discuss the details.2 KB (347 words) - 14:07, 2 July 2021
- ...ndled as other Paper DOIs are handled -might be formalized (DB_info as per Raymond's suggestion)7 KB (934 words) - 19:56, 27 September 2016
- * Student will work with Raymond, Kimberly to do anatomy function & Noctua/GO-CAM curation on dauer developm * Raymond et al. will communicate with Todd and web team about how to handle the data5 KB (670 words) - 15:31, 3 June 2021
- *** Eduardo, Raymond, Todd, Chris3 KB (408 words) - 17:27, 17 December 2020
- * SObA top-slicing (summary view) gets tricky; Raymond looking into better solutions, if available * Todd and Raymond meeting this afternoon5 KB (698 words) - 16:11, 3 January 2019
- * Raymond will look into it2 KB (327 words) - 16:50, 4 January 2018
- === Development environment for Raymond === *Raymond was trying to keep up with the AMIGO 2 development upgrades13 KB (1,983 words) - 16:40, 7 November 2013
- ...gene knockdown phenotypes for more than 100 individual RNAi experiments.||raymond@its.caltech.edu|| ...e loss in a particular cell lineage leads to loss of mutant rescue, etc. ||raymond@its.caltech.edu ||17 KB (2,417 words) - 11:04, 21 December 2011
- * Raymond and Todd will see if they can find a log for archaeological reasons2 KB (329 words) - 17:10, 6 August 2015
- Raymond : Doesn't seem right for the paper not to get priority. We don't need to w Todd : Agree with Raymond, rely on users to look at data + evidence and make their own decisions.15 KB (2,374 words) - 16:00, 17 July 2014
- * https://github.com/WormBase/website/issues/1788 - Abby thinks it's working. Raymond will test it.3 KB (427 words) - 18:31, 3 October 2013
- Raymond asked PAD for insight on how RRIDs are being used, Paul D replied:2 KB (350 words) - 11:50, 6 January 2017
- Follow up question about alternative transcripts...Raymond forwarded email from user.2 KB (376 words) - 16:20, 10 July 2017
- ** Needs patching for WS282 (Raymond) - Adam thinks it can be done as a patch as a hot fix after release.2 KB (354 words) - 16:05, 16 September 2021
- *Let Raymond know of any problems *Raymond can/will create individual user accounts (for those who want it) with acces7 KB (1,059 words) - 15:37, 1 August 2013
- *1:35 Visualizing data with the Ontology Browser and Enrichment Analysis. Raymond Lee (10 mins)2 KB (306 words) - 08:41, 7 June 2019
- *Mary Ann sent to James and Raymond *Adapt to handle anatomy data types that Raymond actually curates7 KB (1,123 words) - 16:39, 6 December 2012
- *Any new web pages for C. elegans researchers, send to Raymond *Raymond from Caltech, with Juancarlos7 KB (1,064 words) - 19:12, 3 November 2011
- '''1400 - 1425''' Cell pages -- Raymond3 KB (357 words) - 20:30, 6 June 2014
- * Raymond: Do we have a common place to track interlibrary loan requests? Could be us *Wen, Daniela, and Raymond will look at the datasets to work out how to incorporate. Start simple.5 KB (873 words) - 14:41, 4 February 2021
- *Raymond made links from Anatomy pages to Gloworm site *Raymond working on fixing5 KB (847 words) - 17:49, 1 March 2012
- *Raymond & Juancarlos working on incorporation of AMIGO2 into WormBase *Raymond ordered a new server computer6 KB (864 words) - 15:32, 6 June 2013
- * Raymond has been looking into * Raymond had updated device drivers and network cards for Mangolassi and Tazendra5 KB (843 words) - 16:32, 4 December 2014
- **Please contact Raymond if you have any problems with this.2 KB (351 words) - 18:32, 15 December 2016
- * [Addressed by Wen and Raymond] GSEA for enrichment analysis https://github.com/WormBase/website/issues/943 KB (458 words) - 16:53, 1 February 2024
- Patch file/Interbuild (Raymond) **Raymond had question about whether it's a good idea in general to create people wit7 KB (1,103 words) - 18:28, 5 May 2011
- *Responsible data curator: Raymond *Responsible data curator: Raymond17 KB (2,401 words) - 22:36, 29 November 2017
- Raymond mentioned that one should adhere to NCBI standards.2 KB (358 words) - 14:03, 13 January 2014
- * http://wobr2.caltech.edu/~raymond/cgi-bin/soba_biggo.cgi * Juancarlos and Raymond looking for feedback; let them know6 KB (911 words) - 17:13, 6 June 2019
- Raymond * will get relationships from Raymond10 KB (1,453 words) - 18:52, 4 February 2015
- * Raymond - Also biocuration automation. * Raymond - For a full build it's difficult to do diffs, something Kevin said a while9 KB (1,570 words) - 16:36, 21 September 2023
- * Let Raymond know if you have an idea for another (extra) use of the server * Let Raymond know if anyone has uses for the server6 KB (927 words) - 14:23, 10 August 2017
- * Laboratory search for "Raymond Chan" did not produce the desired/expected results * Once GAF is generated, will send to Raymond for inclusion into WOBr8 KB (1,218 words) - 17:46, 2 April 2014
- * Raymond: This would be good to discuss at the upcoming International C. elegans Mee2 KB (384 words) - 20:25, 21 May 2015
- ''WormBook's WormMethod chapter by Raymond Lee containing core web resources for C. elegans research''3 KB (514 words) - 23:35, 13 August 2010
- **Caltech: Chris, Gary, Juancarlos, Karen, Kimberly, Mary Ann, Paul, Ranjana, Raymond, Wen, Cecilia3 KB (435 words) - 19:56, 4 March 2016
- * documentation - Raymond2 KB (293 words) - 15:57, 24 May 2013
- ** Raymond will ask who sent them the original file.3 KB (440 words) - 08:42, 3 September 2020
- * Raymond & Juancarlos have been working on autocomplete tool for search bar; not tri * Raymond and Juancarlos have resolved most suggestions8 KB (1,229 words) - 15:31, 1 June 2017
- * There appeared to be missing gene-phenotype annotations; Raymond contacted Kevin Howe * Raymond will try to work on from Taiwan8 KB (1,234 words) - 12:36, 4 June 2014
- * Raymond fixing up to send around first draft * Raymond would like to wrap up today or tomorrow6 KB (910 words) - 15:23, 5 October 2017
- * Has been less stable lately; Raymond has needed to restart machine * Send ideas to Raymond6 KB (912 words) - 01:40, 15 September 2017
- * Wen and Raymond discussed; will add an "uncertain" tag or something similar * Raymond will take a look at6 KB (921 words) - 16:52, 4 January 2018
- * Raymond: suggests we formally take note of how well model proposals play with Datom2 KB (403 words) - 16:33, 6 April 2017
- * Raymond/Juancarlos request testing * Raymond has been in contact with Chris about cell ontology9 KB (1,336 words) - 15:32, 2 June 2016
- * Diff tool: Raymond and Juancarlos created a prototype diff tool (for comparing two genes, for * Raymond: concerned about automatically generating strains based on imports from the6 KB (897 words) - 14:27, 3 October 2019
- *Would be best if Raymond could work with a programmer (Juancarlos?) *Juancarlos and Raymond still working on9 KB (1,339 words) - 19:02, 31 January 2013
- * Being incorporated and worked on by Raymond * Raymond acquired expression clusters from Wen to test the (David's) anatomy enrichm6 KB (906 words) - 21:38, 30 September 2015
- * Raymond will send around reviews * Raymond working on methods paper for SObA display10 KB (1,586 words) - 15:30, 2 November 2017
- ** Priority one is to get the images in that we already sent to us (Raymond)3 KB (563 words) - 03:27, 19 March 2022
- *Paul and Raymond will explore the possibility of a WormBase Foundation for users to make don3 KB (525 words) - 17:20, 4 April 2024
- ** 16.45 Ontology browser and use - Raymond Lee3 KB (438 words) - 07:19, 6 October 2014
- Raymond - Should take this as a base and build up3 KB (452 words) - 17:48, 7 March 2013
- *Raymond bought a new HD **loss of function studies. Raymond will talk to Nikhil and see how he can contribute to curation. We have part12 KB (1,878 words) - 15:55, 6 September 2012
- '''Daniela - working on brugia life-stages with Gary, Raymond and Mark Blaxter'''3 KB (564 words) - 17:27, 20 December 2012
- *Raymond: need for a staging and test environment? Todd: this is in motion3 KB (523 words) - 11:20, 3 April 2020
- |anatomy||Anatomy terms and function||N/A||Raymond Lee||find Anatomy_term<br>find Anatomy_function||||4 KB (580 words) - 18:13, 6 October 2017
- ...the form of .ace files so we can also have whatever information is in WS. Raymond wrote a script to sync those files to tazendra for further processing/use.4 KB (600 words) - 18:40, 2 February 2022
- Abstract platform provided by WormBase? - Raymond/JC3 KB (552 words) - 17:23, 3 January 2019
- * Action Item: Raymond, Wen and Gary to look at this. Raymond: Is it possible to go backwards from a Wormbase modENCODE data boint to the7 KB (1,182 words) - 13:50, 20 April 2012
- * Raymond and Juancarlos have worked on a SObA-graph based comparison tool to compare * Raymond intending to share progress on SObA at December Alliance All-Hands Face-to-13 KB (2,025 words) - 16:28, 7 November 2019
- raymond proposes adding four sub tags to ?Anatomy_term model4 KB (641 words) - 15:23, 19 June 2012
- * Raymond looked at his data types; at first glance thinks there may be quite a few f * Raymond, Juancarlos, David Angeles and Joseph developed automated data processing p11 KB (1,676 words) - 15:28, 2 May 2019
- * Project to J & Raymond working with Post Doc and UG student3 KB (561 words) - 18:39, 6 February 2020
