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- 3 KB (417 words) - 17:50, 16 August 2010
- // Database class. This is to be used in the construction of cgi URLs // an RNAi object would have a Database connection . .1 KB (116 words) - 09:36, 4 October 2010
- The majority of the data stored within WormBase is held in an ACeDb database. Objects within the database are defined centrally in a file called [http://cvs.sanger.ac.uk/cgi-bin/vie2 KB (379 words) - 22:06, 10 October 2013
- databases (multiple instances of the same database in some cases). Should be fault tolerant if a server or database crashes.6 KB (980 words) - 18:48, 11 August 2010
- 700 bytes (98 words) - 09:44, 4 October 2010
- ...mbase.org/wiki/index.php/Image:Fig_1_8_01.png). For a search of the entire database, click the Search link after selecting Anything in the "Search for" pull-do ...nversely, if there are too many results, select a restricted subset of the database for the search from the "Search for" pull-down menu (e.g., "Any Gene"; (htt3 KB (545 words) - 19:56, 11 August 2010
Page text matches
- // Database class. This is to be used in the construction of cgi URLs // an RNAi object would have a Database connection . .1 KB (116 words) - 09:36, 4 October 2010
- 1) Wash U have significantly change their database processing pipeline. *Wash U switching how they build their database, to be similar to EBI386 bytes (57 words) - 14:18, 6 March 2012
- Briggsae GFF database based on CB3 assembly (SM) Archiving legacy CB25 database == New database directory structure ==374 bytes (50 words) - 18:52, 11 August 2010
- Article_URL UNIQUE ?Database UNIQUE ?Database_field UNIQUE ?Accession_number Journal_URL UNIQUE ?Database1 KB (95 words) - 21:28, 6 December 2010
- == 4. Define/resolve Clustalw database problems (all; 10 minutes)==301 bytes (31 words) - 09:39, 1 July 2009
- ?Library DB_info Database ?Database ?Database_field UNIQUE ?Accession_number ...Sequence // Should we store vector sequences in the database?930 bytes (84 words) - 14:02, 4 October 2010
- == 2. Database Connectivity overview (Xiaoqi; 10 minutes) == * update on database connectivity1 KB (141 words) - 17:51, 24 February 2010
- =Stanford Microarray Database (SMD)= *[http://smd.stanford.edu/search.shtml Stanford Microarray Database (SMD) search page]476 bytes (62 words) - 21:35, 29 November 2010
- // a database name and a database field/qualifier to help clarify, e.g. // Database TREMBL TrEMBL_AC Q9N2U81 KB (141 words) - 10:05, 15 November 2011
- == Database migration ==687 bytes (91 words) - 21:32, 1 March 2016
- === Database Connectivity (Xiaoqi; 10 minutes) ===907 bytes (113 words) - 14:27, 19 February 2010
- DB_info Database ?Database ?Database_field ?Accession_number XREF Homology_group DB_info Database ?Database ?Database_field ?Accession_number XREF Homology_group2 KB (193 words) - 11:11, 23 May 2011
- == User session database strategy == * We will leave the user database as-is and not overload with additional columns860 bytes (117 words) - 14:58, 19 August 2014
- * Preparation of C. briggsae database to re-start curation === Database migration ===1 KB (175 words) - 10:58, 19 June 2015
- * will provide a persistent database connection * WB API register Service(database) modules and pass the returning hashref to Object modules767 bytes (107 words) - 16:30, 17 March 2010
- DB_annotation ?Database UNIQUE ?LongText > DB_annotation ?Database UNIQUE ?LongText3 KB (354 words) - 11:08, 3 December 2010
- ?Analysis DB_info Database ?Database ?Database_field ?Accession_number1 KB (104 words) - 10:38, 10 August 2010
- build a user database for enabling greater customizability. 2. User preferences will be stored in a back-end database...3 KB (354 words) - 16:55, 4 November 2010
- ...B_text", and "Web_location" still in use? If so can data be propagated to ?Database?166 bytes (25 words) - 15:02, 5 March 2011
- # database properties # # Access to the postgres database to build into and access from the webapp3 KB (361 words) - 17:56, 14 August 2013
- Test and move the new database filesystem structure into production221 bytes (28 words) - 18:52, 11 August 2010
- == Database migration ==1 KB (161 words) - 14:29, 3 June 2014
- ...ton. All C. elegans clone, sequence and genes are now merged into a single database. * OICR will write NAR paper this year for the Database issue.2 KB (232 words) - 09:58, 2 August 2013
- == 4. Database MIgration ==1 KB (176 words) - 20:42, 3 May 2016
- DB_info Database ?Database ?Database_field ?Accession_number XREF 3d_data2 KB (133 words) - 09:56, 10 August 2010
- According to the WormBase calendar it is a "Database Migration Group" call.232 bytes (28 words) - 13:49, 19 June 2014
- === Create an empty target WormMart database === $ mysql> create database wormmart_${WB_RELEASE};2 KB (289 words) - 18:24, 17 August 2010
- == Session / User database == Session and user management uses a single database (wormbase_users). It is comprised of the following tables:955 bytes (120 words) - 22:36, 16 August 2010
- DB_info Database ?Database ?Database_field ?Accession_number Text //For Darin genbank genpep ids Database ?Database ?Database_field ?Accession_number3 KB (306 words) - 10:00, 26 October 2011
- == Database migration == #**Will create a WS252 DynamoDB database In order to make sure the reorganized code still works and to make sure the3 KB (478 words) - 15:41, 23 February 2016
- ==database URL/URIs== **website flat file only with only database name and description stored in acedb2 KB (361 words) - 16:32, 17 October 2013
- DB_info Database ?Database ?Database_field ?Accession_number XREF Structure_data // Database_field: Na2 KB (192 words) - 09:45, 5 October 2010
- Pathway DB_info Database ?Database_field ?Accession_number //Can be used for any pathway db with uni Pathway DB_info Database ?Database ?Database_field ?Accession_number //Can be used for any pathway db with uni3 KB (275 words) - 01:07, 6 February 2014
- DB_info Database ?Database ?Database_field UNIQUE ?Accession_number // the various SRA and GEO IDs for Run Text ?Database ?Database_field UNIQUE ?Accession_number // the accession of the3 KB (252 words) - 16:46, 9 January 2014
- == Using RSS feeds to stay up-to-date with specific database entries == ...Base now offers the ability to stay up-to-date with favorite genes (or any database object) using RSS.2 KB (390 words) - 08:28, 13 June 2012
- * Aggregator has to be associated with the database conf, not GBrowse.conf * TH: Where will the database live? Do we need to host?1 KB (195 words) - 09:38, 1 July 2009
- ** Using the database on localhost. ** Tested using the production database.736 bytes (92 words) - 21:20, 7 March 2012
- ...art tools are then used to add user interface configuration details to the database. Building the WormBase BioMart Database6 KB (786 words) - 19:13, 18 June 2014
- #[[Design Specs: Database Connectivity|Database Connectivity]] -- ''Xiaoqi''1 KB (144 words) - 20:32, 28 January 2011
- Database ?Database ?Database_field UNIQUE ?Accession_number XREF Pseudogene3 KB (223 words) - 09:22, 10 August 2010
- Article_URL UNIQUE ?Database UNIQUE ?Database_field UNIQUE ?Accession_number Journal_URL UNIQUE ?Database3 KB (320 words) - 10:55, 10 December 2010
- Database Text // database used to search for matches2 KB (184 words) - 08:38, 17 August 2010
- ...atures will be migrated into production along with each new release of the database. New features will NOT be migrated into production in the middle of a relea May 4th: New build of the database released by Sanger (eg WS100)4 KB (628 words) - 14:32, 8 February 2010
- The Wormbase geographic map displays depend on a database named "geo_map". The code base for creating a new geo_map database:4 KB (711 words) - 23:25, 13 August 2010
- ...re loaded and organized in different tables. At the moment of building the database, InterMine code takes information from guiding files that indicate relation1 KB (209 words) - 03:18, 13 November 2018
- ...sed notification system to easily track changes to any given object in the database. Since our databases are build-use-discard, the RSS system requires a database to track changes over time. Here's how it works.4 KB (585 words) - 18:33, 16 August 2010
- with the exception of the maize database, it doesn't yet seem that author participation is the database3 KB (564 words) - 19:15, 10 August 2010
- DB_info Database ?Database ?Database_field UNIQUE ?Accession_number XREF Motif // ID Accession_number2 KB (200 words) - 15:32, 4 October 2010
- ...e from the Gene pages (link is called syntenic alignment). Or in the ACeDB database as Homol_data on the C.elegans and C.briggsae chromosomes. ...ase/data/compara_176.tar.bz2 WS176 based dumps]] containing 4 ensembl-core database + 2 ensembl-compara databases (1 compara-multiplealignment / 1 compara-orth5 KB (727 words) - 17:31, 27 June 2009
- * Open conversation about database migration. Specific actions:501 bytes (67 words) - 18:39, 8 October 2018
- ...in addition to a description of the database. OR the description about the database should be italicized or downplayed a bit more so it is easier to tell that1 KB (175 words) - 00:44, 27 August 2015
- aceserver.cshl.org always hosts an up-to-date copy of the database and the software that drives WormBase. In addition, the underlying database ...ot provide adequate speed for your needs, you may download and install the database locally. For additional help, please contact help@wormbase.org.2 KB (301 words) - 02:21, 1 April 2012
- This project is broken down into three main sections: central database, curation, and website. To use Datomic/DynamoDB as a centralized database system for the WormBase project5 KB (842 words) - 19:41, 17 February 2016
- DB_info Database ?Database ?Database_field ?Text //links molecule to ChEBI, CTD, KEGG, UniProt DB_info Database ?Database ?Database_field ?Text //links molecule to ChEBI, CTD, KEGG, etc6 KB (543 words) - 23:29, 15 March 2016
- ...ief [[WormBase_database_build_overview]], outlining the main stages of the database construction640 bytes (97 words) - 22:32, 16 August 2010
- ...mbase.org/wiki/index.php/Image:Fig_1_8_01.png). For a search of the entire database, click the Search link after selecting Anything in the "Search for" pull-do ...nversely, if there are too many results, select a restricted subset of the database for the search from the "Search for" pull-down menu (e.g., "Any Gene"; (htt3 KB (545 words) - 19:56, 11 August 2010
- ** first create database database_name > CREATE DATABASE database_name;2 KB (370 words) - 22:56, 10 August 2010
- *?Database **Needed a Database object for Gene Ontology Consortium for GO_REFs1 KB (199 words) - 19:08, 10 February 2014
- == 4. Discuss pre-prepared mysql database progress (Norie; 5 minutes) ==1 KB (174 words) - 20:43, 11 August 2010
- Database ?Database ?Database_field ?Text GO_reference ?Database ?Database_field ?Text3 KB (337 words) - 16:15, 19 February 2015
- i) database.WS185.*.tar.gz - compressed data for new release ...models.wrm.WS185 - the latest database schema (also in above database files)6 KB (680 words) - 07:37, 11 January 2008
- ...ould we be creating new papers at the alliance first or in the WB curation database and then importing them in.1 KB (229 words) - 16:05, 15 July 2021
- *[http://www.gmod.org Generic Model Organism Database Project (GMOD)] *[http://www.acedb.org ACeDB] - ''The database engine that drives WormBase''2 KB (284 words) - 22:43, 16 August 2010
- ...earch.JPG]), and the search results (sentences) are stored in the back end database. <span style="mso-spacerun: yes"></span>These sentences can be retrieved b ...he <span class="SpellE">datatype</span> can be deposited into the tracking database.<span style="mso-spacerun: yes"></span><span style="mso-spacerun: yes"></sp4 KB (573 words) - 23:46, 13 August 2010
- i) database.WS186.*.tar.gz - compressed data for new release ...models.wrm.WS186 - the latest database schema (also in above database files)6 KB (683 words) - 05:51, 3 April 2008
- ...we put a tracking system in place to track subscribed lab heads/PIs in the database? * recruiting for the Datomic database position is making good progress1 KB (207 words) - 09:45, 22 January 2016
- === 1a. Is the mysql database issue resolved? === ''Specifically the use of full database names (and not symbolic names), also manifested in the discord between the2 KB (370 words) - 15:21, 11 October 2013
- == Database migration ==431 bytes (50 words) - 14:14, 8 March 2016
- *[http://www.gmod.org Generic Model Organism Database project]759 bytes (106 words) - 21:19, 4 November 2011
- == Genetomic / curation database ==2 KB (296 words) - 01:51, 5 September 2015
- ** Arek has dedicated existing mysql database and loads of capacity Database server with NFS2 KB (315 words) - 10:49, 3 June 2009
- == Database migration ==228 bytes (19 words) - 08:50, 15 March 2016
- WormBase is the major public biological database for the nematode ''Caenorhabditis elegans'' (Chen et al., 2005). It is mean ...vailable in September, 2005 (WS147 release; BioPerl/Generic Model Organism Database software).2 KB (365 words) - 00:06, 1 December 2010
- === Database Connectivity ===2 KB (280 words) - 19:14, 10 August 2010
- ...th other lists. WormMine lists can accept most types of IDs present in the database, and they can be created from multiple types of IDs at the same time (i.e. You can select the list type (from all the types of items in the database) and organism (majority of items are ''C. elegans''). Enter or paste the id3 KB (453 words) - 19:49, 13 November 2018
- ...o be dumped from AceDB and loaded to MySQL. Finally, the data in the MySQL database needs to be processed to be used by N-Browse. *If you need to change the MySQL database or server that the application runs on, the following parameters need to be7 KB (1,133 words) - 17:52, 16 August 2010
- i) database.WS184.*.tar.gz - compressed data for new release ...models.wrm.WS184 - the latest database schema (also in above database files)7 KB (831 words) - 07:36, 11 January 2008
- This is a list of the most prominent classes in use in the AceDB database employed by WormBase. * [[WormBase Model:Database|Database]]4 KB (568 words) - 11:06, 23 May 2011
- ...WormBase software. These freezes, occuring with every tenth release of the database, are permanently archived at wsXXX.wormbase.org. They can be cited using th2 KB (304 words) - 21:19, 5 July 2011
- | Push database1 KB (153 words) - 14:07, 22 March 2008
- The topic this week is 'database future'526 bytes (87 words) - 16:01, 18 March 2014
- - Although no major changes, like a new database, were decided a large number of small decisions were made that will signifi690 bytes (95 words) - 15:59, 21 December 2017
- databases (multiple instances of the same database in some cases). Should be fault tolerant if a server or database crashes.6 KB (980 words) - 18:48, 11 August 2010
- i) database.WS183.*.tar.gz - compressed data for new release ...models.wrm.WS183 - the latest database schema (also in above database files)7 KB (800 words) - 10:01, 8 November 2007
- Online database of behavioral and structural anatomy of C. elegans: [http://www.wormatlas.o556 bytes (74 words) - 19:17, 10 August 2010
- DB_info Database ?Database ?Database_field UNIQUE ?Accession_number XREF Protein2 KB (305 words) - 08:49, 5 October 2010
- ...e ?Database_field ?Accession_number //used for storing PubMed or other database identifiers, for PubMed, Database_field would be PMID5 KB (471 words) - 16:07, 4 October 2010
- DB_INFO ?Database ?Database_field Text #added Oct2013 DR *''Pgdbid'' -- no table -- postgres database ID, generates automatically upon entry.5 KB (814 words) - 18:48, 17 September 2018
- ...atures will be migrated into production along with each new release of the database. New features will NOT be migrated into production in the middle of a relea May 4th: New build of the database released by Sanger (eg WS100)4 KB (600 words) - 14:55, 10 June 2014
- ...f gene (and possibly protein) names they have in their database, mapped to database gene IDs, but variations on gene and protein names can still appear in the *Get a mappings file from the MOD or database that maps each database ID to a list of gene or protein names and synonyms5 KB (857 words) - 23:28, 23 August 2011
- | Is the database running and providing the correct version number? | Update CLUSTAL database3 KB (489 words) - 18:14, 17 August 2010
- === Database migration === === Database migration ===5 KB (741 words) - 10:57, 21 August 2015
- Pathway DB_info Database ?Database ?Database_field ?Accession_number2 KB (260 words) - 11:11, 27 July 2012
- ;item 2 - Database Display Changes For Interactions ;item 2 - Database Display Changes For Interactions3 KB (475 words) - 22:50, 17 December 2010
- Network access to the ''C. elegans'' database is available at the following site:711 bytes (108 words) - 11:13, 5 January 2011
- DB_info Database ?Database ?Database_field ?Text //used for storing ORCID IDs etc. DB_INFO ?Database ?Database_field Text7 KB (881 words) - 15:46, 21 November 2013
- ..._WormBase_with_Bio::DB::GFF Bio::DB::GFF]]. Following the release of a new database from our team at the Wellcome Trust Sanger Institute, some additional post- ...se Schedule|Release schedule]] for any last minute bugs or issues with the database.8 KB (1,219 words) - 22:33, 24 October 2011
- Note: the related user history information will also be deleted from database automatically during this cleanup899 bytes (120 words) - 19:50, 1 February 2011
- 1) Is it possible to upload papers to textpresso as we get them into the database each week? For new paper curation it would be good to get papers when publi633 bytes (113 words) - 17:29, 19 April 2011
- *the Database line is a broken model issue, I have fixed it for WS233 models. Pathway DB_info Database ?Database ?Database_field ?Accession_number4 KB (503 words) - 00:51, 7 November 2013
