WebDev 2009.06.16-Agenda and Minutes

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1. Administration (Todd, 5 minutes)

2. Describe OICR migration progress (Todd, 10 minutes)

See:

In migrating, reconciled four long-standing back burner issues:

  • localized libraries
  • mod_perl2
  • apache2
  • GBrowse 2

GBrowse2:

  • LS: Check to make sure using preforked and not multi-threaded Apache.
  • TH: finishing up migration of configuration files
  • LS: Include feature from common elements
    • #include path/* // for example

Aggregator issues

  • Custom wormbase gene aggregator not working
  • LS: Bio::DB::SeqFeature?
  • TH: Nope, Bio::DB::GFF
  • Aggregator has to be associated with the database conf, not GBrowse.conf

tmpimages

  • TH: available in GB1, used primarily for resolving backend machines generating gbrowse_img pics
  • LS: now handled by apache config stanza
 ** mapping from temporary URL space to physical space; adjust to do spacing

3. modENCODE Update (Marc, Peter, Zheng; 30 minutes)

Peter:

  • Duplicated tracks - regular expression not capturing pattern appropriately
  • Nicole working with Waterston on additional data sets


Marc:

Zheng: WormMart and modENCODE BioMart

BioMart will have central port that will point to development server

  • TH: Where will the database live? Do we need to host?
  • ZZ: Will discuss with Arek

4. Open Table

NO CONFERENCE CALL NEXT WEEK DUE TO THE INTERNATIONAL WORM MEETING