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- 2 KB (320 words) - 20:59, 12 May 2017
- 10 KB (1,461 words) - 23:06, 27 February 2017
- ==OA form ontology/autocomplete dependencies and update scripts== ...ntology/Autocomplete'''||'''postres table'''||'''Source(s)'''||'''Updating scripts'''||'''Used in OA'''20 KB (3,050 words) - 21:01, 19 April 2017
- #REDIRECT [[OA forms, tables, scripts, etc]]44 bytes (6 words) - 22:29, 1 February 2013
- All scripts at: Run all scripts using 'sudo' in the above directory15 KB (2,321 words) - 17:36, 18 August 2017
- --All scripts are under: /home/acedb/ranjana/human_disease ...location has changed, need to alert JC to change the locations for OA and scripts (done, 08.08.2013):36 KB (4,595 words) - 18:10, 15 March 2023
- 539 bytes (84 words) - 19:05, 25 January 2013
- Currently, on mangolassi the ccc.cgi and other scripts and files are here: *scripts5 KB (817 words) - 15:11, 18 February 2014
- =List of scripts and forms to talk about= Associated scripts: script that checks PubMed daily for new papers4 KB (536 words) - 20:31, 25 April 2011
Page text matches
- ** WB pipeline/scripts to generate jbrowse intron tracks ***Scott to point out scripts for processing intron RNASeq data:1 KB (182 words) - 15:49, 4 August 2022
- =List of scripts and forms to talk about= Associated scripts: script that checks PubMed daily for new papers4 KB (536 words) - 20:31, 25 April 2011
- #[[Understand the pipeline by looking at all scripts and forms]]388 bytes (49 words) - 20:02, 15 April 2011
- =Parsing Scripts= *There are two scripts that we run for processing the abstracts:3 KB (532 words) - 13:33, 31 March 2022
- ...he command line using AcePerl. This allows you to write sophisticated Perl scripts to mine WormBase. For details, see the [http://stein.cshl.org/AcePerl/ AceP711 bytes (108 words) - 11:13, 5 January 2011
- ...GSA linking development site that will be used for developing and testing scripts without impacting the live linking pipelines already in place. ...rly will do manual linking of the abstracts in parallel with the automated scripts recording the time it takes to do the various; while doing this she will al2 KB (361 words) - 23:31, 11 January 2011
- ==Scripts on Mangolassi==525 bytes (60 words) - 15:34, 17 May 2016
- $ cd $HOME/mart-build/scripts/wormbase-mart $ cd $HOME/mart-build/scripts/wormbase-mart/wormmart_WS195_meta_tables2 KB (289 words) - 18:24, 17 August 2010
- ...and-line version of the validator, make this module available to your Perl scripts (add to @INC path by using PERL5LIB, installing globally, etc.) and use the ...lidator, make both GFF3::Validator and GFF3::Online available to your Perl scripts. Install the validate_gff3_online script into Apache's CGI script directory3 KB (422 words) - 23:12, 13 August 2010
- * scripts under development907 bytes (113 words) - 14:27, 19 February 2010
- #[[Paper Pipeline Scripts]]1 KB (130 words) - 21:21, 15 March 2021
- *Table maker vs Scripts? *Chris will work with Juancarlos to sort out OA dumping scripts for Gene_regulation and Interaction OAs4 KB (651 words) - 16:11, 2 May 2013
- ...ded directly by curator vs. what was populated automatically (e.g. mapping scripts) *We should archive all data-processing scripts in GitHub4 KB (695 words) - 15:26, 7 June 2012
- ==OA and scripts for disease data== [[OA and scripts for disease data]]5 KB (782 words) - 20:56, 8 January 2020
- * Ranjana brought up thet the Cele_ prefix was breaking few scripts here at Caltech. Those are NCBI locus tag prefixes, they are listed as othe929 bytes (147 words) - 19:14, 21 February 2013
- ...remap.tar.bz2 remap.tar.bz2] contains all of the data files as well as the scripts etc.1 KB (194 words) - 12:46, 29 June 2021
- All scripts at: Run all scripts using 'sudo' in the above directory15 KB (2,321 words) - 17:36, 18 August 2017
- Scripts must be named according to the function they carry out. ...suffix that denotes their type (BASH scripts: .sh, Perl scripts: .pl, Ruby scripts: .rb).6 KB (950 words) - 15:36, 19 June 2014
- **When new sources files are available, scripts will run to generate and populate the tables needed for the curation form.1 KB (201 words) - 20:17, 29 August 2013
- * Write scripts to automate data extraction for existing tracks.1 KB (158 words) - 13:51, 5 August 2014
- Command: <code>./website-intermine/scripts/dump_ace.sh /mnt/ephemeral0/acedb_dump_ws244</code> ./website-intermine/scripts/dump_ace.sh /mnt/ephemeral0/acedb_dump_ws2449 KB (947 words) - 18:27, 12 August 2014
- *[[OA forms, tables, scripts, etc]] * [[Linking_script_pipeline | Linking scripts]]3 KB (325 words) - 17:36, 25 April 2023
- - Discussion on scripts re: generation of config files.1 KB (191 words) - 16:32, 30 September 2009
- * New update scripts2 KB (216 words) - 16:54, 31 March 2010
- * Model changes -- will need update of the scripts.2 KB (231 words) - 16:52, 14 April 2010
- '''Scripts'''1 KB (199 words) - 19:08, 10 February 2014
- ** To handle dead genes, scripts at Caltech that recognize them; replace with new gene1 KB (201 words) - 19:18, 24 January 2013
- ...tegrating JBrowse build into main website build (currently are stand alone scripts)1 KB (176 words) - 20:42, 3 May 2016
- Currently, on mangolassi the ccc.cgi and other scripts and files are here: *scripts5 KB (817 words) - 15:11, 18 February 2014
- /home/arun/gsa/scripts/01sortedLexicon.pl.<br> This script also uses the PERL modules available at /home/arun/gsa/scripts/perlmodules/.14 KB (2,324 words) - 19:51, 9 January 2015
- it has been included automatically into our .ACE files by scripts. The * need to look at scripts and change to handle new namespace4 KB (599 words) - 00:25, 4 May 2012
- ...epository called "wormbase-architecture" feel free to add your own Ansible scripts to this project. By using Ansible we will be able to automate DevOps operat ...Datomic. The first iteration will be very similar to the current Perl CGI scripts being used in production by their curators.5 KB (842 words) - 19:41, 17 February 2016
- ...interaction data, developed per descriptions from the N-Browse team. These scripts are described later in the document. ...ibed below. For components that require compilation, note the simple shell scripts named “_build.sh” where commands for Wormbase servers are placed.7 KB (1,133 words) - 17:52, 16 August 2010
- ...s -- could be wrong, but I don't think any gin_ tables are used in dumping scripts since we store WBGene IDs. except maybe gin_dead if people want those suppr ='''Previous (pre-nameserver move) Scripts:'''=9 KB (1,464 words) - 14:10, 29 May 2015
- * Updated JQuery scripts1 KB (178 words) - 21:51, 8 December 2010
- === Scripts for community description form === * James wrote scripts that will need to inform community CGI6 KB (926 words) - 16:49, 3 December 2015
- Users wishing to automate data retrieval from WormBase should direct their scripts to the data mining server (mining.wormbase.org) instead of the primary Worm2 KB (301 words) - 02:21, 1 April 2012
- /etc/sysconfig/network-scripts/ifcfg-eth02 KB (282 words) - 23:34, 13 August 2010
- ...lk_load_gff.pl program comes with BioPerl. Look for it in the subdirectory scripts/Bio-DB-GFF. Once you've got the database loaded, you can write scripts to mine the data. For example, this script will find all named (3-letter) g11 KB (1,663 words) - 17:45, 16 August 2010
- Supplementary scripts:4 KB (506 words) - 20:45, 10 August 2010
- ...shl.org) has been set up and can be remotely accessed via command-line and scripts. It is easy to link to WormBase or extract information for data-mining purp3 KB (514 words) - 15:39, 24 September 2007
- ''Obsolete-> To check if the re-population scripts worked, check out the [http://tazendra.caltech.edu/~azurebrd/var/work/pheno ...need to be transferred to tazendra and renamed to be recognizable by those scripts. Transfer files to tazendra: scp all files to acedb@tazendra.caltech.edu:/h10 KB (1,644 words) - 18:48, 13 August 2020
- * Stats script for runtime of scripts, to compare between releases.2 KB (311 words) - 16:12, 19 August 2021
- **Will need to re-run scripts with new data **Scripts needed in this directory: parse_kevin_godata.pl and populate_gop_OA_pheno2g6 KB (1,087 words) - 19:52, 27 July 2015
- * Paul and Gary: porting, perl scripts for querying datomic2 KB (296 words) - 01:51, 5 September 2015
- *how much power do the scripts need? can check ...understand demand of the application; requirements; development vs running scripts, how often? Efficient use of machines. Have 2 computers, getting a third; f8 KB (1,282 words) - 17:08, 7 July 2011
- ...file maps PubMed identifiers to MOD paper IDs. A script will run with ccc scripts every time to generate this universal mapping file to use. *gpi files: /home/azurebrd/public_html/cgi-bin/forms/ccc/scripts11 KB (1,666 words) - 17:53, 19 June 2014
- !Use - Dumping scripts |yes? for MA's scripts??8 KB (1,375 words) - 05:12, 21 April 2020
- ...modules -- one per step -- that implement the step or make calls to helper scripts * helper scripts in Perl or shell that assist in implementation25 KB (3,632 words) - 03:11, 28 October 2013
- **generate conversion matrix of existing scripts into Catalyst3 KB (365 words) - 19:14, 10 August 2010
- ...to work out Javascript issues (collisions) between main site and auxiliary scripts & dependencies2 KB (379 words) - 16:39, 1 October 2015
- ...laboratories||Manual curation: curator||Image extraction: Textpresso, perl scripts. Manual curation: curator||Genes, Anatomy Terms, Subcellular Localization|| ...n of sequences associated with allelic variations||SVM, Textpresso(cats or scripts?)||Manual curation: curator||Genes, Sequences, Variations, PCR products (?)9 KB (1,174 words) - 18:30, 29 August 2012
- To make scripts live: Back To [[OA and scripts for disease data]]8 KB (1,088 words) - 22:59, 29 July 2016
- ==Related scripts, predates the trackers==13 KB (2,062 words) - 14:01, 4 August 2017
- ** Ini file under version control, maintained by a combination of scripts and manual curation3 KB (405 words) - 13:18, 15 January 2016
- Scripts that aren't modified often (use <code>cvs history <script></code>) can safe3 KB (404 words) - 21:07, 9 August 2010
- : Abby commited scripts; Todd will slot in to pipeline for WS227 (see Xapian in WormBase doc)3 KB (440 words) - 20:32, 27 July 2011
- ...need to select a specific OWL annotation property to dump into OBO so our scripts can recognize them and populate ACEDB/Datomic; will look into; may require3 KB (427 words) - 15:32, 1 August 2019
- ==OA form ontology/autocomplete dependencies and update scripts== ...ntology/Autocomplete'''||'''postres table'''||'''Source(s)'''||'''Updating scripts'''||'''Used in OA'''20 KB (3,050 words) - 21:01, 19 April 2017
- ...from postgres. SGD and FlyBase provide us with files on the web, which our scripts download every week. In case of FlyBase, the latest file has to be dynamica5 KB (857 words) - 23:28, 23 August 2011
- '''JS - been modifying upload scripts for brugia'''3 KB (564 words) - 17:27, 20 December 2012
- * Cloud - writing scripts3 KB (456 words) - 15:50, 25 October 2013
- *Almost all scripts working *Yuling runs scripts on Textpresso corpus to collect URLs7 KB (1,064 words) - 19:12, 3 November 2011
- A number of scripts located at wormbase/util/google_indexing help in the creation of this file.4 KB (553 words) - 17:31, 19 June 2014
- <!-- Please load dependent stylesheets and scripts via wormbase.js -->5 KB (743 words) - 23:43, 13 August 2010
- ./scripts/get_uniprot.pl --release [WSRELEASE] $ ./bio/scripts/make_source wormbase-gff3 gff9 KB (1,231 words) - 14:55, 19 June 2014
- ...efix e.g. "Cbr-". Formatting errors are not easily dealt with by automated scripts. ...ure curators. Authors should declare any new gene names before the linking scripts are run, but authors do not always follow through. One action is to link th10 KB (1,696 words) - 17:21, 25 July 2013
- Make new tables and run scripts : Scripts in place to find nonmatching IDs<br>10 KB (1,537 words) - 17:05, 28 May 2021
- *Conversion scripts will need to be run again to convert objects to new model format *AcePerl scripts could perform batch gene queries7 KB (1,158 words) - 17:20, 3 May 2012
- ...password protected link to an author first pass form that was generated by scripts in /home/postgres/work/pgpopulation/afp_papers. Email sent from cronjob of ...bmitted, all data entered is automatically added to the lexica the markup scripts used for entity recognition and linking.15 KB (2,589 words) - 16:42, 11 January 2018
- ...ever means may be useful on one's own computer (e.g. through shell or Perl scripts).4 KB (720 words) - 18:31, 17 August 2010
- * Wen is running scripts to generate worm data for modSeek * Wen is modifying SPELL scripts for modSeek8 KB (1,147 words) - 15:33, 7 May 2015
- *Curators will continue to add info to Wiki on scripts, dependencies, ontologies, etc. for each Ontology Annotator *Will modify OA dumping scripts with Juancarlos to automate recognition of dead genes and replace them (if8 KB (1,161 words) - 16:34, 7 March 2013
- ==Location of scripts and files on Textpresso== ====Scripts====15 KB (2,102 words) - 05:17, 25 September 2014
- ** Build database pipeline scripts to add automatically inferred gene associations from variation-to-gene mapp5 KB (705 words) - 16:31, 16 June 2020
- *Scripts and documentation used to deal with/handle large scale data should be put i *Store all large scale data sets and scripts, documentation, etc. on a single computer with regular backup12 KB (1,878 words) - 15:55, 6 September 2012
- Two dumping scripts are required to capture all of the allele phenotype data, both on tazendra:5 KB (749 words) - 19:47, 17 May 2018
- | Perl || 5.8.8 || run build scripts ./website-intermine/scripts/install_tomcat.sh 7.0.4725 KB (3,652 words) - 23:06, 25 December 2014
- =Scripts= There are 2 cronjobs and 3 scripts:18 KB (2,743 words) - 17:14, 16 March 2023
- Apache CGI scripts directory? [/usr/local/wormbase/website-classic/cgi-perl/seq] // Will au ...setup to launch at server boot (rc3 and rc5) -- no need to mess with init scripts.28 KB (3,957 words) - 19:55, 5 May 2022
- *Incorporating new corrections to scripts and entity lists4 KB (650 words) - 17:08, 1 September 2011
- * Raymond and Juancarlos are cleaning and vetting scripts * Sibyl working on scripts to pull in data8 KB (1,220 words) - 16:26, 3 September 2015
- * And to have these scripts / files :5 KB (843 words) - 17:17, 12 October 2012
- Library syncrhonization is handled by two scripts.5 KB (819 words) - 17:37, 16 August 2010
- ...build project. See [http://cvs.sanger.ac.uk/cgi-bin/viewcvs.cgi/mart-build/scripts/wormbase-mart/?root=BioMart Web CVS] for more details. ...mMart can be found [http://cvs.sanger.ac.uk/cgi-bin/viewcvs.cgi/mart-build/scripts/wormbase-mart/README-wormmart?root=BioMart&view=markup here]. They are pas6 KB (786 words) - 19:13, 18 June 2014
- [[Annotation of Disease scripts]] Back To [[OA and scripts for disease data]]14 KB (2,085 words) - 20:27, 7 July 2022
- * Running Textpresso scripts ** Yuling has run scripts to determine word frequencies among these papers10 KB (1,279 words) - 18:20, 18 October 2013
- * Wrote scripts and configured an LLM for Named Entity Recognition. Trained an LLM on gene * Mark checks Build scripts and WS291 results. After that, he contacted UniProt and he's working with t9 KB (1,375 words) - 16:04, 18 April 2024
- ...nt I will check it over to make sure it is in the proper format for Arun's scripts and correct whatever needs to be corrected, (should probably have some stal6 KB (1,017 words) - 19:34, 2 December 2011
- = Changes to ?GO_annotation parsing scripts =6 KB (834 words) - 17:56, 15 June 2020
- Directory for the acebrowser CGI scripts (~username ok): [/usr/local/wormbase/website/tharris/root/cgi-bin/ace]6 KB (868 words) - 18:47, 13 April 2015
- *Rough specs for some scripts to help generate numbers and hopefully strategy5 KB (825 words) - 21:25, 24 June 2013
- **Underlying HTML and scripts for the page ***[https://github.com/aduong/ace2couch Ace2Couch Scripts] for migrating data11 KB (1,786 words) - 14:31, 17 May 2016
- '''Installing MySQL and BLAT monitoring scripts NOT DONE''' == Installing scripts to verify that the servers are running ==26 KB (3,522 words) - 19:10, 18 June 2014
- --All scripts are under: /home/acedb/ranjana/human_disease ...location has changed, need to alert JC to change the locations for OA and scripts (done, 08.08.2013):36 KB (4,595 words) - 18:10, 15 March 2023
- ...ressed genes. A use case would be the Transposon_in_origin genes where the scripts would only used the "Transposon_in_origin tag in the History tag structure.8 KB (1,073 words) - 15:31, 14 December 2012
- [[OA_forms,_tables,_scripts,_etc|OA forms, tables, scripts, etc.]] /home/postgres/public_html/cgi-bin/oa/scripts/populate_oa_tab_file/populate_oa_tab_file.pl20 KB (3,124 words) - 19:59, 19 February 2020
- *Any newer scripts available? Substitution?5 KB (847 words) - 17:49, 1 March 2012
- **File conversion done automatically - no need to write scripts5 KB (843 words) - 17:26, 1 November 2012
- ...e Doc spreadsheets can be downloaded as tab-delimited files for parsing by scripts5 KB (843 words) - 16:32, 4 December 2014
- ...per Display "curation_flags", Paper Editor). Curators need to check their scripts to see if they use this and update it or talk to Juancarlos (search for 'fu6 KB (823 words) - 19:38, 2 January 2014
- /data2/data-processing/download/celegans/scripts/scripts_to_fetch_data_from_postgres/primary.com7 KB (1,204 words) - 18:58, 30 June 2014
- ...it will be checked over to make sure it is in the proper format for Arun's scripts and corrected if needed.7 KB (1,133 words) - 20:36, 23 July 2013
- ...ntology (for eventual browsing in WOBr)? No file generated yet, but GO GAF scripts can be modified to create * Dumping scripts have been modified to handle dead genes13 KB (1,983 words) - 16:40, 7 November 2013
- *Juancarlos: Scripts that check differences between data dumps; scripts are data type specific13 KB (2,097 words) - 22:48, 7 April 2011
- * Will break scripts if people are programmatically accessing the Caltech or Tazendra URLs6 KB (906 words) - 15:34, 6 December 2018
- * There are several OBO-to-ACE conversion scripts we use6 KB (910 words) - 16:43, 7 March 2019
- * Install BLAT and monitoring scripts; modify paths as req'd8 KB (1,087 words) - 17:35, 19 June 2014
- * We already have scripts to convert GPAD to ACE format6 KB (801 words) - 17:29, 2 July 2014
- *Since the linking scripts perform exact string match (and formatting cue recognition), if data is not [[Linking script pipeline | Linking scripts]]<br>17 KB (2,790 words) - 20:50, 10 January 2017
- * Scripts to be run manually6 KB (903 words) - 16:37, 5 January 2012
- /data2/data-processing/download/celegans/scripts/scripts_to_fetch_data_from_postgres/primary.com For existing papers, the table will be populated via two scripts:25 KB (3,238 words) - 16:42, 8 November 2019
- * Need to wait for new strain IDs from Hinxton before running dumping scripts6 KB (897 words) - 14:27, 3 October 2019
- The scripts that mediate production release are maintained in the git [https://github.c8 KB (1,229 words) - 16:17, 30 December 2013
- ...ere will be an alternative method using CPANPLUS and "cpanp i"-based shell scripts. However, this is not yet straightforward to set up on Fedora Core 4. ...emwide PATH in /etc/profile before trying to run Ace, even in one-off Perl scripts that do simple data mining.60 KB (9,496 words) - 23:06, 13 August 2010
- * Karen: WB Wiki page for OA forms, tables, scripts, etc. : http://wiki.wormbase.org/index.php/OA_forms,_tables,_scripts,_etc7 KB (1,073 words) - 16:26, 2 March 2017
- **Curators have GitHub access to all the AcePerl scripts, including those that generate FTP files7 KB (1,047 words) - 15:34, 4 April 2013
- *Elbrus still needed for RNAi scripts to generate ACE files7 KB (1,117 words) - 16:39, 4 August 2011
- ...rs (Kimberly ?) tell Juancarlos what we want to extract, we're keeping the scripts that get data from the nameserver.7 KB (1,059 words) - 15:37, 1 August 2013
- Scripts from Mary Ann7 KB (1,123 words) - 16:39, 6 December 2012
- Helper scripts and the stand-alone server.10 KB (1,357 words) - 14:03, 19 June 2014
- **RNAi scripts (sequence mapping); Migrating to EBI7 KB (1,103 words) - 18:28, 5 May 2011
- #[[Scripts for file dumping and conversion]] ==Software Development: Tools and Scripts==30 KB (3,904 words) - 18:45, 13 May 2020
- $ sudo scripts/mysql_install_db --user=mysql // may be necessary to remove /etc/mysql/my.8 KB (1,307 words) - 14:39, 4 November 2010
- ...also like to be explicit about the species, as it might be easier for web scripts to pull information if it's right there. But Kevin's point15 KB (1,892 words) - 19:54, 10 February 2017
- ...of file production matters, as after the first file is dumped, the parsing scripts look to the previous .ace file to begin assigning GO annotation ids All scripts and files: /home/acedb/ranjana/citace_upload/go_curation23 KB (3,744 words) - 15:12, 23 December 2022
- # pass the PHP scripts to FastCGI server listening on 127.0.0.1:9000...14 KB (1,410 words) - 19:29, 1 August 2013
- * Retroactively, papers will be flagged by scripts8 KB (1,224 words) - 15:34, 21 July 2016
- * Wen will modify SimpleMine scripts to accommodate change9 KB (1,368 words) - 15:27, 4 October 2018
- .../edit this description in the box below. This description was generated by scripts based on homology/orthology data and Gene Ontology annotations in WormBase.12 KB (1,838 words) - 18:16, 19 May 2015
- * In some cases it seems the special characters cause problems for downstream scripts (e.g. FTP interactions file generator)8 KB (1,228 words) - 20:57, 14 July 2020
- * RO will go into WS267. Kimberly was working on parsing scripts for the relations to go into WB11 KB (1,898 words) - 16:43, 7 June 2018
- * Juancarlos writing scripts to generate list of valid papers with relevant e-mail information10 KB (1,475 words) - 16:57, 5 November 2015
- *Do the dumping scripts filter out annotations made to now dead/invalid genes?14 KB (1,928 words) - 19:10, 25 January 2013
- ==citace upload scripts== ===Scripts related to concise descriptions===47 KB (6,852 words) - 04:27, 8 December 2020
- * Juancarlos wrote scripts to check the data across the two databases, finds discrepancies10 KB (1,474 words) - 15:54, 30 April 2014
- ...scale .ace file needs to be checkd again dead genes for each upload using scripts in the same directory: find_invalid_genes_largescale.pl* - 08/31/2012 for ...e run, change source file (in file) to latest large scale .ace version (in scripts)50 KB (5,228 words) - 15:10, 21 July 2017
- * Sibyl and Xiaodong looking at data and scripts from Gene Orienteer10 KB (1,464 words) - 17:09, 13 August 2015
- *Scripts: Scripts for automated concise descriptions (for reference)36 KB (5,076 words) - 01:38, 2 March 2016
- ...te a shell script to run the species consecutively, or make multiple shell scripts to run several species in parallel on multiple cores. I use vim with regul15 KB (2,419 words) - 15:11, 26 July 2016
- ** Juancarlos will write (or append to existing) Postgres/OA dumping scripts to:11 KB (1,782 words) - 17:55, 13 May 2021
- **** No explicit evidence in postgres, but notes on what we did, e.g. scripts and string matching ** symlinks to the scripts -> will back up the links but not the files, which will be backed up with g36 KB (4,994 words) - 17:27, 14 February 2024
- * Starting work porting some of the old name server scripts. Agreed that a 1-for-1 re-write not appropriate for new system (many operat11 KB (1,714 words) - 11:04, 27 July 2015
- ...just dump all Postgres data into one place, Karen's developers could write scripts to process that data;12 KB (1,809 words) - 16:33, 1 March 2018
- AddHandler cgi-script .cgi Tell apache its okay to execute CGI scripts, and to set Expires headers by adding this to access.conf: Place all update scripts in wormbase-admin34 KB (5,450 words) - 18:24, 17 August 2010
- *For Gene object curation, when orthologs are added via analysis scripts (Mary Ann)15 KB (2,374 words) - 16:00, 17 July 2014
- ...mapping - doesn't matter what their LIMS system. Every single lab has made scripts to submit data.37 KB (5,533 words) - 19:17, 11 April 2014
- ...mapping - doesn't matter what their LIMS system. Every single lab has made scripts to submit data.37 KB (5,533 words) - 19:17, 11 April 2014
- Both populating and dumping scripts at:/home/acedb/ranjana/concise_testing Text will be: This description was automatically generated by Textpresso scripts based on homology/orthology data and Gene Ontology (GO) annotations from th65 KB (9,380 words) - 22:39, 5 July 2018
- ...rrect? '''yes, I think so, but if that Variation_gene.txt is used for some scripts you run manually, or a cronjob picks it up, getting rid of it on mangolassi23 KB (3,334 words) - 19:01, 31 October 2017
- Check these forms / scripts (get rid of two_fullname view and replace with code looking at firstname mi ==scripts that run automatically==119 KB (18,888 words) - 00:05, 2 May 2014
- $ sudo scripts/mysql_install_db --user=mysql // may be necessary to remove /etc/mysql/my.20 KB (2,916 words) - 15:25, 4 August 2016
- it calls the next 2 scripts24 KB (3,538 words) - 17:50, 15 December 2015
- All scripts are under:32 KB (3,649 words) - 20:55, 21 May 2020
- ...ation files and a series of CGI scripts runs on the apache server. The CGI scripts provide users with a number of ways to browse and search WormBase. One approach is to write your own scripts in Perl using the Bio::Graphics modules that are part of BioPerl. A second67 KB (10,954 words) - 09:22, 19 February 2013
- /data1/Users/liyuling/Curator_related/expression_pattern/scripts/ 600x600 images are generated with photoshop (scripts -> image processor) and stored in a separate folder called 600. The archite120 KB (19,719 words) - 16:44, 20 October 2023
- If any one of these five basic pieces of information are missing, the scripts that generate the *.ace file will fail, returning an error.29 KB (4,152 words) - 20:29, 30 July 2019
- *The Textpresso transgene scripts29 KB (4,575 words) - 16:23, 3 March 2022
- *Files and scripts for these large scale datasets have been moved into a new directory:53 KB (6,521 words) - 20:51, 7 March 2019
- ...n't need to check transgene against these field anymore. Jucarlose removed scripts of checking from gene regulation dumper.- XW 7-9-2014 </strike> http://www.sanger.ac.uk/cgi-bin/Projects/C_elegans/scripts/variation_server.pl?action=new_var59 KB (8,367 words) - 22:00, 14 December 2018
- require Exporter; # exports so that other perl scripts can use it104 KB (15,303 words) - 19:39, 11 May 2023
