User contributions
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Jump to navigationJump to search- 19:34, 3 November 2010 diff hist +62 TAIR →Curation - Sentence Input and Annotation
- 19:14, 3 November 2010 diff hist +2 TAIR
- 17:40, 3 November 2010 diff hist +28 TAIR →From WormBase documentation:
- 17:23, 3 November 2010 diff hist 0 TAIR →Script explanation - Juancarlos
- 17:23, 3 November 2010 diff hist 0 TAIR →Specifications for Curation Pipeline
- 17:22, 3 November 2010 diff hist +382 TAIR →Script explanation - Juancarlos
- 17:21, 3 November 2010 diff hist +1,236 TAIR →Textpresso Search for Cellular Component Annotations
- 17:53, 2 November 2010 diff hist +121 N-Z titles current
- 17:40, 2 November 2010 diff hist +65 Journals current
- 17:35, 2 November 2010 diff hist +329 Journals
- 17:00, 2 November 2010 diff hist +75 Journals
- 16:58, 2 November 2010 diff hist 0 2010 - Paper Pipeline: Documentation and Instructions
- 16:53, 2 November 2010 diff hist +14 Adding pmid Identifier to Paper Object current
- 16:52, 2 November 2010 diff hist +2 N-Z titles
- 16:50, 2 November 2010 diff hist +26 Journals
- 16:37, 2 November 2010 diff hist +2 Journals
- 16:37, 2 November 2010 diff hist +107 Journals
- 16:28, 2 November 2010 diff hist +1 Adding pmid Identifier to Paper Object
- 16:28, 2 November 2010 diff hist 0 Adding pmid Identifier to Paper Object
- 16:27, 2 November 2010 diff hist +2 Adding pmid Identifier to Paper Object
- 16:27, 2 November 2010 diff hist +834 Adding pmid Identifier to Paper Object
- 16:21, 2 November 2010 diff hist +26 N-Z titles
- 16:20, 2 November 2010 diff hist +211 N-Z titles
- 16:14, 2 November 2010 diff hist +24 Journals
- 15:22, 2 November 2010 diff hist +28 Adding pmid Identifier to Paper Object
- 15:16, 2 November 2010 diff hist +6 Adding pmid Identifier to Paper Object
- 15:15, 2 November 2010 diff hist -8 Adding pmid Identifier to Paper Object
- 15:14, 2 November 2010 diff hist +1,213 N Adding pmid Identifier to Paper Object Created page with ''''Instructions for adding a PMID identifier to a Paper Object''' If a journal's papers are currently indexed by PubMed, but we don't have the PMID, you can add it using the pap…'
- 14:59, 2 November 2010 diff hist +44 2010 - Paper Pipeline: Documentation and Instructions
- 19:22, 28 October 2010 diff hist +53 TAIR →Features to Implement for Future Use
- 19:21, 28 October 2010 diff hist +161 TAIR →Textpresso Search for Cellular Component Annotations
- 17:57, 28 October 2010 diff hist +278 Gene Ontology →New Terms
- 17:50, 28 October 2010 diff hist +19 TAIR →Paper Acquisition
- 16:30, 28 October 2010 diff hist +1 TAIR →Curation - Sentence Input and Annotation
- 16:29, 28 October 2010 diff hist +104 TAIR →Curation - Sentence Input and Annotation
- 16:24, 28 October 2010 diff hist +152 TAIR →Curation - Sentence Input and Annotation
- 16:22, 28 October 2010 diff hist -4 TAIR →Textpresso Search for Cellular Component Annotations
- 16:22, 28 October 2010 diff hist +4 TAIR →Textpresso Search for Cellular Component Annotations
- 16:21, 28 October 2010 diff hist +3 TAIR →Textpresso Search for Cellular Component Annotations
- 16:20, 28 October 2010 diff hist +161 TAIR →Curation - Sentence Input and Annotation
- 16:15, 28 October 2010 diff hist +105 TAIR →Curation - Output to Gene Association File
- 16:12, 28 October 2010 diff hist +14 TAIR →Textpresso Search for Cellular Component Annotations
- 16:11, 28 October 2010 diff hist +391 TAIR
- 16:06, 28 October 2010 diff hist -2 TAIR
- 16:05, 28 October 2010 diff hist +392 TAIR
- 15:58, 28 October 2010 diff hist +137 TAIR →Textpresso Search for Cellular Component Annotations
- 15:55, 28 October 2010 diff hist +147 TAIR →Textpresso Search for Cellular Component Annotations
- 15:48, 28 October 2010 diff hist -10 TAIR →Specifications for Curation Pipeline
- 15:47, 28 October 2010 diff hist +307 TAIR →Curation - Output to Gene Association File
- 15:30, 28 October 2010 diff hist +8 TAIR →Pipeline Specifics
- 15:29, 28 October 2010 diff hist +1,710 TAIR →Specifications for Curation Pipeline
- 14:41, 28 October 2010 diff hist -15 TAIR →Specifications for Curation Pipeline
- 14:41, 28 October 2010 diff hist -95 TAIR
- 21:26, 26 October 2010 diff hist +182 Mf hmm tool →Sentence Classification
- 21:24, 26 October 2010 diff hist +189 Mf hmm tool →List of papers page
- 21:24, 26 October 2010 diff hist -190 Mf hmm tool →Sentence Classification
- 21:22, 26 October 2010 diff hist +4 Mf hmm tool →Curation in OA
- 21:22, 26 October 2010 diff hist +270 Mf hmm tool
- 20:56, 26 October 2010 diff hist +168 Mf hmm tool →Sentence Classification
- 20:55, 26 October 2010 diff hist -53 Mf hmm tool
- 20:54, 26 October 2010 diff hist +29 Mf hmm tool
- 20:53, 26 October 2010 diff hist -7 Mf hmm tool →List of papers page
- 20:53, 26 October 2010 diff hist +1 Mf hmm tool →List of papers page
- 20:53, 26 October 2010 diff hist -1 Mf hmm tool →List of papers page
- 20:52, 26 October 2010 diff hist +260 Mf hmm tool →List of papers page
- 20:49, 26 October 2010 diff hist +134 Mf hmm tool →List of papers page
- 20:47, 26 October 2010 diff hist +472 Mf hmm tool →List of papers page
- 19:58, 26 October 2010 diff hist +244 Mf hmm tool →Curation page
- 19:57, 26 October 2010 diff hist +270 Mf hmm tool →Curation page
- 19:56, 26 October 2010 diff hist +171 Mf hmm tool →Curation page
- 19:54, 26 October 2010 diff hist -3 Mf hmm tool →List of papers page
- 19:54, 26 October 2010 diff hist +3 Mf hmm tool →List of papers page
- 19:54, 26 October 2010 diff hist +298 Mf hmm tool →List of papers page
- 19:49, 26 October 2010 diff hist +62 Mf hmm tool →Login page
- 19:48, 26 October 2010 diff hist +91 Mf hmm tool →Login page
- 22:30, 7 October 2010 diff hist -2 Mf hmm tool
- 22:30, 7 October 2010 diff hist -4 Mf hmm tool
- 22:29, 7 October 2010 diff hist -1 Mf hmm tool →=List of papers page
- 22:28, 7 October 2010 diff hist +342 Mf hmm tool →Login page
- 22:19, 7 October 2010 diff hist +18 Mf hmm tool →Specifications/Instructions for the mf_hmm tool
- 22:18, 7 October 2010 diff hist +258 Mf hmm tool →Intended Use
- 22:15, 7 October 2010 diff hist +73 Mf hmm tool
- 22:06, 7 October 2010 diff hist +670 Mf hmm tool
- 21:06, 7 October 2010 diff hist +25 N Mf hmm tool Created page with 'Back to Gene Ontology'
- 21:05, 7 October 2010 diff hist +18 Gene Ontology
- 21:04, 7 October 2010 diff hist +76 Gene Ontology →Semi-Automated Methods of Curation
- 20:00, 28 September 2010 diff hist +5 Adding Papers not in PubMed
- 21:02, 22 September 2010 diff hist +72 WormBase
- 21:01, 22 September 2010 diff hist +114 WormBase
- 17:50, 22 September 2010 diff hist +875 Gene Ontology
- 16:03, 20 September 2010 diff hist +292 Phenotype2GO Mappings File current
- 20:17, 13 September 2010 diff hist +28 Regional and Topical Meetings
- 20:16, 13 September 2010 diff hist 0 Regional and Topical Meetings
- 20:16, 13 September 2010 diff hist +5 Regional and Topical Meetings
- 20:15, 13 September 2010 diff hist +802 N Regional and Topical Meetings Created page with 'On alternate years from the International C. elegans Meeting at UCLA, there are specific regional and topical meetings held at various locations around the world. WormBase inclu…'
- 20:01, 13 September 2010 diff hist +6 Getting Meeting Abstracts into WormBase current
- 20:01, 13 September 2010 diff hist +6 Getting Meeting Abstracts into WormBase
- 19:59, 13 September 2010 diff hist -3 Getting Meeting Abstracts into WormBase
- 19:59, 13 September 2010 diff hist +82 N Getting Meeting Abstracts into WormBase Created page with '#International C. elegans Meetings - UCLA ##Regional and Topical Meetings ###Other'
- 19:14, 30 August 2010 diff hist +2 Dumping Script
- 19:13, 30 August 2010 diff hist +133 Dumping Script
- 18:53, 30 August 2010 diff hist +223 Dumping Script
- 18:51, 30 August 2010 diff hist +20 Paper Pipeline
- 19:40, 27 August 2010 diff hist -3 WormBase
- 19:38, 27 August 2010 diff hist +526 WormBase
- 20:13, 4 August 2010 diff hist +58 Caltech documentation
- 19:57, 4 August 2010 diff hist -14 Caltech documentation →Datatype Curation
- 19:57, 4 August 2010 diff hist -11 Caltech documentation →Datatype Curation
- 19:56, 4 August 2010 diff hist -130 Postgres management Blanked the page current
- 19:50, 4 August 2010 diff hist +5 Postgres management
- 19:49, 4 August 2010 diff hist +32 Postgres management
- 19:48, 4 August 2010 diff hist +85 N File:WBGene update pipeline.ppt Flow diagram of WBGene info updates from latest WormBase release (WS) and Nameserver. current
- 19:45, 4 August 2010 diff hist +93 N Postgres management Created page with 'Flow diagram of WBGene info updates from the latest WormBase release (WS) and the Nameserver:'
- 19:12, 4 August 2010 diff hist +25 Caltech documentation →Datatype Curation
- 21:29, 24 June 2010 diff hist +1,647 Phenotype2GO Paper Inclusion List
- 19:49, 24 June 2010 diff hist +219 Phenotype2GO Paper Inclusion List
- 19:35, 24 June 2010 diff hist +28 Phenotype2GO Paper Inclusion List
- 19:31, 24 June 2010 diff hist +373 N Phenotype2GO Paper Inclusion List Created page with 'All papers in the list have the curation flag 'Phenotype2GO' in the paper_editor.cgi WBPaper00004402 WBPaper00004403 WBPaper00004540 WBPaper00004651 WBPaper00004769 WBPaper…'
- 19:27, 24 June 2010 diff hist +39 Gene Ontology →Phenotype2GO Mappings for Biological Process Annotation (Variation2GO and RNAiPhenotype2GO)
- 13:35, 15 April 2010 diff hist +39 Removing Dead Genes from Papers →Removing Dead Genes Going Forward: Using the New Paper Editor and the Dumping Script
- 13:34, 15 April 2010 diff hist +29 Removing Dead Genes from Papers →Removing Dead Genes Going Forward: Using the New Paper Editor and the Dumping Script
- 13:34, 15 April 2010 diff hist +620 Removing Dead Genes from Papers →Removing Dead Genes: Using the New Paper Editor
- 13:30, 15 April 2010 diff hist +930 Removing Dead Genes from Papers →Removing Dead Genes: Transferring Data from Old to New Postgres Tables
- 13:23, 15 April 2010 diff hist -2 Removing Dead Genes from Papers
- 13:22, 15 April 2010 diff hist +129 N Removing Dead Genes from Papers New page: ==Removing Dead Genes: Transferring Data from Old to New Postgres Tables== ===Removing Dead Genes: Using the New Paper Editor===
- 13:21, 15 April 2010 diff hist +37 2010 - Paper Pipeline: Documentation and Instructions
- 15:05, 11 April 2010 diff hist +68 Attaching Genes to Papers
- 15:04, 11 April 2010 diff hist +2 Attaching Genes to Papers
- 15:04, 11 April 2010 diff hist +438 N Attaching Genes to Papers New page: ==Genes Attached upon Paper Approval== When papers are added to postgres using the Enter New Papers function of the Paper Editor, the corresponding abstracts are scanned, via a script, fo...
- 14:57, 11 April 2010 diff hist +31 2010 - Paper Pipeline: Documentation and Instructions
- 11:50, 9 April 2010 diff hist +5 N-Z titles
- 18:45, 8 April 2010 diff hist +69 Dumping Script
- 18:45, 8 April 2010 diff hist +296 N Dumping Script New page: The dumping script will check for any dead gene IDs attached to papers and comment them out of the .ace file until they are fixed/deleted from postgres by a curator. The AQL query that fi...
- 18:43, 8 April 2010 diff hist +20 2010 - Paper Pipeline: Documentation and Instructions
- 18:34, 8 April 2010 diff hist +28 Merging Papers →New Protocol
- 18:25, 8 April 2010 diff hist +28 Merging Papers →New Protocol
- 15:41, 8 April 2010 diff hist +151 N Meeting abstracts New page: Meeting_abstracts will get the not_designated tag with respect to the primary/not_primary/not_designated tags. Back to Entering New Paper Objects current
- 15:40, 8 April 2010 diff hist +40 Gazette articles
- 15:39, 8 April 2010 diff hist -33 Gazette articles
- 15:39, 8 April 2010 diff hist +142 N Gazette articles New page: Gazette_articles will get the not_designated tag with respect to the primary/not_primary/not_designated tags. Back to Entering New Papers
- 18:25, 7 April 2010 diff hist +96 DictyBase
- 18:09, 7 April 2010 diff hist +603 Merging Papers →New Protocol
- 18:05, 7 April 2010 diff hist +201 Merging Papers →New Protocol
- 17:56, 7 April 2010 diff hist +212 Merging Papers →New Protocol
- 17:53, 7 April 2010 diff hist +234 Merging Papers →New Protocol
- 17:49, 7 April 2010 diff hist +43 Merging Papers →New Protocol
- 17:46, 7 April 2010 diff hist +1 Merging Papers →New Protocol
- 17:43, 7 April 2010 diff hist +99 Merging Papers →New Protocol
- 17:31, 7 April 2010 diff hist +308 Merging Papers →New Protocol
- 17:23, 7 April 2010 diff hist +213 Merging Papers →New Protocol
- 17:21, 7 April 2010 diff hist +336 Merging Papers →New Protocol
- 17:10, 7 April 2010 diff hist +385 Merging Papers →New Protocol
- 16:54, 7 April 2010 diff hist +39 Merging Papers
- 16:52, 7 April 2010 diff hist +20 2010 - Paper Pipeline: Documentation and Instructions
- 16:51, 7 April 2010 diff hist +39 Books
- 16:50, 7 April 2010 diff hist +308 N Books New page: '''Background:''' When we started using the new Paper Types, we included a new Type, Book. In the past, both books and book chapters were given the Type Book_chapter. In the ?Paper mode...
- 16:50, 7 April 2010 diff hist +62 Entering New Paper Objects
- 16:49, 7 April 2010 diff hist +72 Entering New Paper Objects
- 16:48, 7 April 2010 diff hist -31 2010 - Paper Pipeline: Documentation and Instructions
- 16:47, 7 April 2010 diff hist -308 Creating New Book Objects Removing all content from page current
- 16:47, 7 April 2010 diff hist +68 Entering New Paper Objects
- 16:46, 7 April 2010 diff hist +6 Entering New Paper Objects →''' ''C. elegans'' Papers from PubMed'''
- 15:12, 7 April 2010 diff hist +50 Entering New Paper Objects →What Types of Papers Get Entered
- 15:01, 7 April 2010 diff hist +11 Entering New Paper Objects →What Types of Papers Get Entered
- 15:00, 7 April 2010 diff hist +37 Entering New Paper Objects →What Types of Papers Get Entered
- 14:59, 7 April 2010 diff hist +16 Entering New Paper Objects →What Types of Papers Get Entered
- 14:58, 7 April 2010 diff hist +358 Entering New Paper Objects
- 14:41, 7 April 2010 diff hist -1 Entering New Paper Objects
- 14:41, 7 April 2010 diff hist +215 N Entering New Paper Objects New page: == Entering New Paper Ojbects == Different types of papers can be entered into postgres in different ways, depending upon the type and subject matter of the paper and whether or not the ...
- 14:34, 7 April 2010 diff hist +28 Creating New Book Objects
- 14:33, 7 April 2010 diff hist +33 2010 - Paper Pipeline: Documentation and Instructions
- 16:16, 5 April 2010 diff hist +280 N Creating New Book Objects New page: '''Background:''' When we started using the new Paper Types, we included a new Type, Book. In the past, both books and book chapters were given the Type Book_chapter. In the ?Paper mode...
- 16:09, 5 April 2010 diff hist +58 N 2010 - Paper Pipeline: Documentation and Instructions New page: Back to Paper Pipeline #Creating New Book Objects
- 16:08, 5 April 2010 diff hist +15 Paper Pipeline
- 16:07, 5 April 2010 diff hist +44 Paper Pipeline
- 16:06, 5 April 2010 diff hist +1 N-Z titles
- 16:03, 5 April 2010 diff hist +25 N-Z titles
- 16:31, 24 March 2010 diff hist +2 Reference Genome Reports - Annotation Coverage
- 16:31, 24 March 2010 diff hist +27 Reference Genome Reports - Annotation Coverage
- 16:29, 24 March 2010 diff hist -4 Reference Genome Reports - Annotation Coverage
- 16:29, 24 March 2010 diff hist +2 Reference Genome Reports - Annotation Coverage
- 16:28, 24 March 2010 diff hist -4 Reference Genome Reports - Annotation Coverage
- 16:28, 24 March 2010 diff hist +10 Reference Genome Reports - Annotation Coverage
- 16:27, 24 March 2010 diff hist 0 Reference Genome Reports - Annotation Coverage
- 16:26, 24 March 2010 diff hist +5 Reference Genome Reports - Annotation Coverage
- 16:25, 24 March 2010 diff hist +1,552 Reference Genome Reports - Annotation Coverage
- 16:06, 24 March 2010 diff hist +870 N Reference Genome Reports - Annotation Coverage New page: '''Reference Genome Reports - Annotation Coverage''' Purpose: To report to the GO Consortium the extent of annotation coverage for Reference Genome genes. Annotation Coverage Criteria: ...
- 16:00, 24 March 2010 diff hist +1 Gene Ontology →Scripts
- 15:58, 24 March 2010 diff hist +64 Gene Ontology
- 11:59, 23 March 2010 diff hist +39 Journals
- 11:52, 23 March 2010 diff hist +327 Journals
- 17:13, 22 March 2010 diff hist +13 Phenotype2GO Mappings Sept. 09
- 16:44, 22 March 2010 diff hist +28 Phenotype2GO Mappings Sept. 09
- 16:32, 22 March 2010 diff hist +28 Phenotype2GO Mappings File
- 16:32, 22 March 2010 diff hist +27 Phenotype2GO Mappings File
- 16:31, 22 March 2010 diff hist +19 Phenotype2GO Mappings File
- 15:09, 15 March 2010 diff hist -9 Gene Ontology →Annotation Practices
- 15:07, 15 March 2010 diff hist -2 Gene Ontology →Annotation Practices
- 15:07, 15 March 2010 diff hist +256 Gene Ontology →Annotation Practices
- 15:04, 15 March 2010 diff hist +26 Gene Ontology
- 19:01, 8 March 2010 diff hist +279 N Genes mentioned along with word in Figure or Table category New page: Right now, this seems to be the most promising approach. 'Over-association' will come from things like markers. 'Under-association' will come from lists of genes in figures or tables, bu...
- 14:28, 7 March 2010 diff hist +109 Associating genes with papers
- 16:41, 1 March 2010 diff hist +38 WormBase
- 14:36, 24 February 2010 diff hist -18 Lung Development Targets (November 2009 - February 2010) →December Targets
- 14:35, 24 February 2010 diff hist +26 Lung Development Targets (November 2009 - February 2010) →December Targets
- 14:34, 24 February 2010 diff hist +3 Lung Development Targets (November 2009 - February 2010) →December Targets
- 11:49, 24 February 2010 diff hist +30 Lung Development Targets (November 2009 - February 2010) →December Targets
- 17:20, 18 February 2010 diff hist +1 Journals
- 17:16, 18 February 2010 diff hist +27 N-Z titles
- 17:13, 18 February 2010 diff hist +15 Journals
- 16:57, 18 February 2010 diff hist +20 Journals
- 15:41, 14 February 2010 diff hist +83 Merging Papers
- 19:14, 11 February 2010 diff hist +11 Lung Development Targets (November 2009 - February 2010)
- 19:08, 11 February 2010 diff hist -1 Lung Development Targets (November 2009 - February 2010) →November Targets
- 19:06, 11 February 2010 diff hist +825 Lung Development Targets (November 2009 - February 2010) →November Targets
- 18:49, 11 February 2010 diff hist +13 Lung Development Targets (November 2009 - February 2010) →November Targets
- 18:48, 11 February 2010 diff hist +151 Lung Development Targets (November 2009 - February 2010)
- 18:42, 8 February 2010 diff hist +7 New Paper Model - Model and Changes to Pipeline
- 15:42, 8 February 2010 diff hist -4 New Paper Model - Model and Changes to Pipeline
- 14:05, 8 February 2010 diff hist +2 Journals
- 14:05, 8 February 2010 diff hist +26 Journals
- 14:04, 8 February 2010 diff hist +144 N-Z titles
- 18:08, 7 February 2010 diff hist +134 Lung Development Targets (November 2009 - February 2010)
- 17:35, 7 February 2010 diff hist +22 Lung Development Targets (November 2009 - February 2010)
- 17:33, 7 February 2010 diff hist +30 Lung Development Targets (November 2009 - February 2010)
- 17:08, 7 February 2010 diff hist +86 Lung Development Targets (November 2009 - February 2010)
- 15:14, 7 February 2010 diff hist +38 Lung Development Targets (November 2009 - February 2010)
- 00:08, 7 February 2010 diff hist +38 Ontology Annotator
- 00:08, 7 February 2010 diff hist +2 Ontology Annotator
- 00:05, 7 February 2010 diff hist +1 Ontology Annotator
- 23:52, 6 February 2010 diff hist +98 Ontology Annotator
- 23:38, 6 February 2010 diff hist +19 Gene Ontology
- 22:59, 6 February 2010 diff hist +21 Lung Development Targets (November 2009 - February 2010)
- 22:49, 6 February 2010 diff hist +38 Lung Development Targets (November 2009 - February 2010)
- 22:02, 6 February 2010 diff hist +141 Ontology Annotator →Wish List and Bug Reports, Jan-Feb 2010
- 22:00, 6 February 2010 diff hist +27 Lung Development Targets (November 2009 - February 2010)
- 21:28, 6 February 2010 diff hist +143 Lung Development Targets (November 2009 - February 2010)
- 21:11, 6 February 2010 diff hist -21 Lung Development Targets (November 2009 - February 2010)
- 21:10, 6 February 2010 diff hist +2 Lung Development Targets (November 2009 - February 2010)
- 21:08, 6 February 2010 diff hist +37 Lung Development Targets (November 2009 - February 2010)
- 19:56, 6 February 2010 diff hist +573 N Lung Development Targets (November 2009 - February 2010) New page: Lung Development Gene Annotation Progress {|border="1" cell spacing="0" cellpadding="5" align="center" !Panther ID !C. elegans Target(s) !Curator !Papers !Biological Process !Molecular Fu...
- 19:45, 6 February 2010 diff hist -339 Gene Ontology
- 19:42, 6 February 2010 diff hist +46 Gene Ontology
- 19:41, 6 February 2010 diff hist +182 Gene Ontology
- 19:56, 5 February 2010 diff hist -1 Type - mapping incoming Type
- 18:57, 5 February 2010 diff hist +102 Primary data Tag
- 18:46, 5 February 2010 diff hist +82 Type - mapping incoming Type
- 18:45, 5 February 2010 diff hist +77 Primary data Tag
- 18:43, 5 February 2010 diff hist 0 Primary data Tag
- 13:17, 5 February 2010 diff hist -1 New Paper Model - Model and Changes to Pipeline
- 18:21, 3 February 2010 diff hist +326 Journals
- 18:04, 3 February 2010 diff hist +113 Journals
- 17:55, 3 February 2010 diff hist +39 Journals
- 17:52, 3 February 2010 diff hist +161 Journals
- 17:48, 3 February 2010 diff hist +58 Journals
- 17:38, 3 February 2010 diff hist -10,348 Journals
- 17:37, 3 February 2010 diff hist +14 N-Z titles
- 17:36, 3 February 2010 diff hist +97 N-Z titles
- 17:33, 3 February 2010 diff hist +9,934 N N-Z titles New page: Nano Lett Nanotechnology Nat Biotechnol Nat Cell Biol Nat Chem Biol Nat Genet Nat Immunol Nat Med Nat Med (Tokyo) Nat Methods Nat Neurosci Nat Protoc Nat Rev Drug Discov Nat Rev Genet Nat ...
- 17:33, 3 February 2010 diff hist +34 Journals
- 16:54, 3 February 2010 diff hist +227 Journals
- 16:08, 3 February 2010 diff hist +107 Ontology Annotator
- 15:46, 3 February 2010 diff hist +20 Ontology Annotator
- 15:44, 3 February 2010 diff hist -1 Ontology Annotator
- 15:43, 3 February 2010 diff hist +45 Ontology Annotator
- 15:42, 3 February 2010 diff hist +12 Ontology Annotator
- 15:40, 3 February 2010 diff hist +3 Ontology Annotator
- 15:40, 3 February 2010 diff hist +284 Ontology Annotator
- 14:57, 28 January 2010 diff hist +256 Ontology Annotator →Wish List, Jan-Feb 2010
- 10:41, 26 January 2010 diff hist 0 In book
- 14:23, 22 January 2010 diff hist +81 In book
- 14:23, 22 January 2010 diff hist +82 In book
- 12:30, 20 January 2010 diff hist -6 New Paper Model - Model and Changes to Pipeline
- 12:30, 20 January 2010 diff hist 0 Paper Pipeline
- 18:27, 19 January 2010 diff hist -108 New Paper Model - Model and Changes to Pipeline
- 18:24, 19 January 2010 diff hist -4 New Paper Model - Model and Changes to Pipeline
- 18:21, 19 January 2010 diff hist +85 New Paper Model - Model and Changes to Pipeline
- 18:19, 19 January 2010 diff hist +49 New Paper Model - Model and Changes to Pipeline
- 18:16, 19 January 2010 diff hist -1 New Paper Model - Model and Changes to Pipeline
- 18:07, 19 January 2010 diff hist +83 New Paper Model - Model and Changes to Pipeline
- 17:58, 19 January 2010 diff hist +1 New Paper Model - Model and Changes to Pipeline
- 17:57, 19 January 2010 diff hist +64 New Paper Model - Model and Changes to Pipeline
- 17:56, 19 January 2010 diff hist +3 New Paper Model - Model and Changes to Pipeline
- 17:56, 19 January 2010 diff hist -1 New Paper Model - Model and Changes to Pipeline
- 17:56, 19 January 2010 diff hist +11 New Paper Model - Model and Changes to Pipeline
- 17:55, 19 January 2010 diff hist +5 New Paper Model - Model and Changes to Pipeline
- 17:54, 19 January 2010 diff hist +4,735 New Paper Model - Model and Changes to Pipeline
- 15:36, 5 January 2010 diff hist +34 Paper Pipeline
- 15:21, 5 January 2010 diff hist +40 Abstracts
- 15:20, 5 January 2010 diff hist +69 Associating genes with papers
- 15:13, 5 January 2010 diff hist +2 What to do about non-standard nomenclature current
- 15:13, 5 January 2010 diff hist +167 N What to do about non-standard nomenclature New page: HMMs? But then what? Either check a synonym list or funnel to a curator for manual checking. Back to Associating genes with papers Back to Paper Pipeline
- 15:12, 5 January 2010 diff hist +49 Associating genes with papers
- 15:11, 5 January 2010 diff hist +40 Abstracts
- 13:38, 5 January 2010 diff hist +7 Abstracts
- 13:33, 5 January 2010 diff hist +93 N What to do about new gene names not yet in WB New page: Look for cosmid names. Back to Associating genes with papers Back to Paper Pipeline current
- 12:29, 5 January 2010 diff hist +36 Abstracts
- 12:24, 5 January 2010 diff hist +182 What to do about large-scale papers current
- 12:17, 5 January 2010 diff hist +33 What to do about large-scale papers
- 12:13, 5 January 2010 diff hist +28 Using the Paper Editor
- 12:13, 5 January 2010 diff hist +37 N Using the Paper Editor New page: WBPaper00030839 - empty gene objects?
- 12:13, 5 January 2010 diff hist +18 Paper Pipeline
- 12:09, 5 January 2010 diff hist +9 Abstracts
- 12:08, 5 January 2010 diff hist +182 Abstracts
- 11:48, 5 January 2010 diff hist +3 Abstracts
- 11:48, 5 January 2010 diff hist +21 Abstracts
- 11:37, 5 January 2010 diff hist +52 Abstracts
- 11:22, 5 January 2010 diff hist +39 Associating genes with papers
- 11:19, 5 January 2010 diff hist +20 Abstracts
- 11:19, 5 January 2010 diff hist +27 Associating genes with papers
- 19:03, 4 January 2010 diff hist +51 Associating genes with papers
- 19:02, 4 January 2010 diff hist +34 Abstracts
- 19:01, 4 January 2010 diff hist +3 Abstracts
- 19:01, 4 January 2010 diff hist +65 Abstracts
- 18:58, 4 January 2010 diff hist -3 Abstracts
- 18:57, 4 January 2010 diff hist +128 Abstracts
- 18:44, 4 January 2010 diff hist +81 Abstracts
- 18:41, 4 January 2010 diff hist +71 What to do about large-scale papers
- 18:41, 4 January 2010 diff hist +57 N What to do about large-scale papers New page: Previously defined as papers that study 50 or more genes.
- 18:40, 4 January 2010 diff hist +90 Associating genes with papers
- 18:34, 4 January 2010 diff hist +40 Associating genes with papers
- 18:33, 4 January 2010 diff hist +21 Abstracts
- 18:31, 4 January 2010 diff hist +1 Associating genes with papers
- 18:31, 4 January 2010 diff hist +109 Associating genes with papers
- 18:28, 4 January 2010 diff hist +1 Abstracts
- 18:27, 4 January 2010 diff hist +42 Abstracts
- 18:27, 4 January 2010 diff hist 0 Associating genes with papers
- 18:27, 4 January 2010 diff hist +28 Associating genes with papers
- 18:26, 4 January 2010 diff hist +43 Associating genes with papers
- 18:26, 4 January 2010 diff hist +2 Abstracts
- 18:26, 4 January 2010 diff hist +321 Abstracts
- 18:20, 4 January 2010 diff hist +157 N Abstracts New page: Currently, genes or proteins mentioned in the abstracts get associated with papers. (This was not always the case.) Are abstracts enough? Here's the data:
- 18:16, 4 January 2010 diff hist +307 N Associating genes with papers New page: Several possible strategies to test, may differ for sectioned vs non-sectioned papers: #Abstracts #Gene frequency #Genes in Results (or equivalent) #[[Gene frequency in Result...
- 18:13, 4 January 2010 diff hist +35 Paper Pipeline
- 13:00, 23 December 2009 diff hist +54 Paper Pipeline
- 14:57, 21 December 2009 diff hist +104 Adding Papers not in PubMed
- 14:45, 21 December 2009 diff hist +134 Adding Papers not in PubMed
- 14:26, 21 December 2009 diff hist +35 Adding Papers not in PubMed
- 14:05, 21 December 2009 diff hist +21 Adding Papers not in PubMed
- 13:56, 21 December 2009 diff hist +100 Adding Papers not in PubMed
- 13:30, 21 December 2009 diff hist +1,123 N Adding Papers not in PubMed New page: New paper information can be entered through the paper editor, but you have to create the paper (i.e. get a WBPaper ID) through postgres first. To do this, you will need to login to tazen...
- 13:21, 21 December 2009 diff hist +33 Paper Pipeline
- 14:26, 16 December 2009 diff hist -14 Primary data Tag
- 14:26, 16 December 2009 diff hist -2 Primary data Tag
- 14:26, 16 December 2009 diff hist +95 Primary data Tag
- 14:25, 16 December 2009 diff hist +28 Primary data Tag
- 14:24, 16 December 2009 diff hist +214 Primary data Tag
- 14:16, 16 December 2009 diff hist +200 N Primary data Tag New page: Paper Types that will get Primary Data Tag: Paper Types that will get No Primary Data Tag: Paper Types that will get Not Designated Tag: Back to [[New Paper Model - Model and Changes t...
- 14:14, 16 December 2009 diff hist +22 New Paper Model - Model and Changes to Pipeline
- 13:38, 16 December 2009 diff hist +337 Project meeting agendas and minutes
- 18:51, 9 December 2009 diff hist +115 In book
- 18:50, 9 December 2009 diff hist +114 In book
- 17:33, 9 December 2009 diff hist -434 In book
- 17:32, 9 December 2009 diff hist +10,968 In book
- 16:13, 9 December 2009 diff hist +115 Type - mapping incoming Type
- 16:12, 9 December 2009 diff hist +63 Type - mapping incoming Type
- 16:10, 9 December 2009 diff hist +1,675 N Type - mapping incoming Type New page: Nearly all articles are assigned the Type Journal Article when they first appear in PubMed. Note that in PubMed, the Type is not always case sensitive; they have JOURNAL ARTICLE and Journa...
- 13:56, 9 December 2009 diff hist +123 Type - mapping of current to future Type
- 13:53, 9 December 2009 diff hist +1,336 N Type - mapping of current to future Type New page: '''Mapping of current ?Paper Type to new ?Paper Type:''' Note: all ?Paper Types are listed, even if there is no change to the text. However, new or changed Types are in '''bold''', with ...
- 13:53, 9 December 2009 diff hist +70 New Paper Model - Model and Changes to Pipeline
- 13:51, 9 December 2009 diff hist +18 Type
- 13:51, 9 December 2009 diff hist -3 Type
- 13:50, 9 December 2009 diff hist +1,321 N Type New page: '''Mapping of current ?Paper Type to new ?Paper Type:''' Note: all ?Paper Types are listed, even if there is no change to the text. However, new or changed Types are in '''bold''', with ...
- 16:10, 8 December 2009 diff hist +23 WormBase SVMs →seqchange and genesymbol
- 13:07, 8 December 2009 diff hist +28 WormBase
- 13:07, 8 December 2009 diff hist +1,543 WormBase
- 19:32, 7 December 2009 diff hist +456 Random Selection of New Training Set Papers
- 18:53, 7 December 2009 diff hist -5 Training Set
- 18:52, 7 December 2009 diff hist +10 Training Set
- 18:52, 7 December 2009 diff hist +57 Training Set
- 18:51, 7 December 2009 diff hist +27 Random Selection of New Training Set Papers
- 18:47, 7 December 2009 diff hist +134 Random Selection of New Training Set Papers
- 17:13, 7 December 2009 diff hist +553 N Random Selection of New Training Set Papers New page: Checking a random list of training set papers to verify quality for SVM: 'Yes' means the paper has the data we'd want for training. WBPaper00032217 - yes WBPaper00032287 - yes WBPaper0...
- 16:28, 7 December 2009 diff hist +6 Training Set
- 16:28, 7 December 2009 diff hist +6 Training Set
- 16:26, 7 December 2009 diff hist +246 Training Set
- 16:18, 7 December 2009 diff hist -26 WormBase SVMs
- 16:18, 7 December 2009 diff hist +1 112009 seqchange
- 16:17, 7 December 2009 diff hist +74 100209 seqchange
- 16:14, 7 December 2009 diff hist +1 100209 seqchange
- 16:14, 7 December 2009 diff hist +20 100209 seqchange
- 16:13, 7 December 2009 diff hist +49 100209 seqchange
- 16:08, 7 December 2009 diff hist 0 100209 seqchange
- 16:07, 7 December 2009 diff hist +139 100209 seqchange
- 16:07, 7 December 2009 diff hist -1 100209 seqchange
- 16:06, 7 December 2009 diff hist +2 100209 seqchange
- 16:05, 7 December 2009 diff hist +965 100209 seqchange
- 14:45, 7 December 2009 diff hist +79 100209 seqchange
- 14:44, 7 December 2009 diff hist +830 N 100209 seqchange New page: {| class="wikitable" border="1" |- ! WBPaper ID ! SVM confidence ! True positive for seqchange? ! True positive for genesymbol? ! Comments |- ! WBPaper00035194 ! high ! Sort of ! No ! Disc...
- 14:10, 7 December 2009 diff hist +25 WormBase SVMs →seqchange and genesymbol
- 14:00, 7 December 2009 diff hist -2 WormBase SVMs →seqchange and genesymbol
- 14:00, 7 December 2009 diff hist -5 WormBase SVMs →seqchange and genesymbol
- 18:04, 4 December 2009 diff hist -4 XML Status Tag
- 18:04, 4 December 2009 diff hist +243 XML Status Tag
- 18:01, 4 December 2009 diff hist +1,520 N XML Status Tag New page: '''For checking the indexing status of a paper in PubMed, we need to check the Status tag at the beginning of the record:''' Partial XML for an '''indexed''' paper, Status=MEDLINE <...
- 17:55, 4 December 2009 diff hist +20 New Paper Model - Model and Changes to Pipeline
- 14:42, 4 December 2009 diff hist +4 Overall performance
- 14:41, 4 December 2009 diff hist +7 Overall performance
- 14:41, 4 December 2009 diff hist +54 Overall performance
- 14:37, 4 December 2009 diff hist +27 Overall performance
- 14:35, 4 December 2009 diff hist +574 Overall performance
- 14:28, 4 December 2009 diff hist +11 Overall performance
- 14:27, 4 December 2009 diff hist -1 Overall performance
- 14:26, 4 December 2009 diff hist +3 Overall performance
- 14:26, 4 December 2009 diff hist +330 Overall performance
- 12:49, 4 December 2009 diff hist +43 Overall performance
- 12:48, 4 December 2009 diff hist -12 Overall performance
- 12:48, 4 December 2009 diff hist -3 Overall performance
- 12:46, 4 December 2009 diff hist +1,488 N Overall performance New page: {| border="1" |- ! Date ! Paper - SVM Positive ! Confidence Score ! True Positive (strict) ! True Positive - seqchange (more lenient) ! Comment |- ! 103009 ! WBPaper00035315 ! high ! Y...
- 12:30, 4 December 2009 diff hist +1 Training Set
- 12:30, 4 December 2009 diff hist +25 Training Set
- 12:26, 4 December 2009 diff hist +2 Training Set
- 12:26, 4 December 2009 diff hist +785 Training Set
- 12:19, 4 December 2009 diff hist -108 Training Set
- 12:18, 4 December 2009 diff hist +19 Training Set
- 12:17, 4 December 2009 diff hist +191 Training Set
- 12:14, 4 December 2009 diff hist +37 Training Set
- 12:14, 4 December 2009 diff hist +318 N Training Set New page: 09/17/209 email: seqchange is highlighted in yellow, which means that the SVM performance is good judging by using those papers fristpassed. I need to obtain a list of curated paper IDs ...
- 18:57, 3 December 2009 diff hist +53 WormBase SVMs →seqchange and genesymbol
- 18:51, 3 December 2009 diff hist +44 WormBase SVMs →seqchange and genesymbol
- 18:50, 3 December 2009 diff hist +44 WormBase SVMs →geneprod_GO
- 12:05, 3 December 2009 diff hist +1 New Paper Model - Model and Changes to Pipeline
- 12:03, 3 December 2009 diff hist -1 New Paper Model - Model and Changes to Pipeline
- 12:02, 3 December 2009 diff hist +7 New Paper Model - Model and Changes to Pipeline
- 12:01, 3 December 2009 diff hist -3 New Paper Model - Model and Changes to Pipeline
- 11:52, 3 December 2009 diff hist +93 New Paper Model - Model and Changes to Pipeline
- 12:40, 1 December 2009 diff hist +31 Paper Pipeline
- 16:11, 30 November 2009 diff hist -1 (4 papers)
- 16:10, 30 November 2009 diff hist +3 (4 papers)
- 16:10, 30 November 2009 diff hist +120 (4 papers)
- 16:05, 30 November 2009 diff hist +1,217 N (4 papers) New page: '''Papers flagged by authors for structcorr''' {| border="1" |- ! WBPaper ID ! Author comments (checked means the author flagged the data type but left no additional comments) ! Date the ...
- 15:58, 30 November 2009 diff hist +2 (11 papers)
- 15:58, 30 November 2009 diff hist -2 (11 papers)
- 15:57, 30 November 2009 diff hist +653 (11 papers)
- 15:51, 30 November 2009 diff hist +8 (11 papers)
- 15:50, 30 November 2009 diff hist -67 (11 papers)
- 15:47, 30 November 2009 diff hist +175 (11 papers)
- 15:45, 30 November 2009 diff hist +4 (11 papers)
- 15:44, 30 November 2009 diff hist +390 (11 papers)
- 15:23, 30 November 2009 diff hist -6 November 25, 2009 - Sequence Curation Flags →Action Items
- 15:23, 30 November 2009 diff hist +17 November 25, 2009 - Sequence Curation Flags →Action Items
- 15:22, 30 November 2009 diff hist +1 November 25, 2009 - Sequence Curation Flags →Action Items
- 15:22, 30 November 2009 diff hist +71 November 25, 2009 - Sequence Curation Flags →Action Items
- 15:21, 30 November 2009 diff hist -1 November 25, 2009 - Sequence Curation Flags →Action Items
- 15:21, 30 November 2009 diff hist +1 November 25, 2009 - Sequence Curation Flags →Action Items
- 15:20, 30 November 2009 diff hist +71 November 25, 2009 - Sequence Curation Flags →Action Items
- 15:20, 30 November 2009 diff hist +3 November 25, 2009 - Sequence Curation Flags →Action Items
- 15:17, 30 November 2009 diff hist +59 November 25, 2009 - Sequence Curation Flags →Action Items
- 15:12, 30 November 2009 diff hist +1 November 25, 2009 - Sequence Curation Flags
- 15:12, 30 November 2009 diff hist +35 November 25, 2009 - Sequence Curation Flags
- 15:10, 30 November 2009 diff hist +106 (11 papers)
- 15:06, 30 November 2009 diff hist 0 (11 papers)
- 15:04, 30 November 2009 diff hist +2,147 N (11 papers) New page: '''Papers flagged by authors for seqchange''' {| border="1" |- ! WBPaper ID ! Author comments (checked means the author flagged the data type but left no additional comments) ! Date the d...
- 14:37, 30 November 2009 diff hist +449 N (1 paper) New page: '''Papers flagged by authors for massspec''' {| border="1" |- ! WBPaper ID ! Author comments (checked means the author flagged the data type but left no additional comments) ! Date the da...
- 14:35, 30 November 2009 diff hist -1 (2 papers)
- 14:35, 30 November 2009 diff hist -2 (10 papers)
- 14:34, 30 November 2009 diff hist -19 (2 papers)
- 14:33, 30 November 2009 diff hist +1,028 N (2 papers) New page: '''Papers flagged by authors for mapping data''' {| border="1" |- ! WBPaper ID ! Author comments (checked means the author flagged the data type but left no additional comments) ! Date th...
- 14:29, 30 November 2009 diff hist +48 (10 papers)
- 14:28, 30 November 2009 diff hist +1,908 N (10 papers) New page: {| border="1" |- ! WBPaper ID ! Author comments (checked means the author flagged the data type but left no additional comments) ! Date the data type was flagged |- ! [http://dev.wormbase....
- 14:28, 30 November 2009 diff hist +7 November 25, 2009 - Sequence Curation Flags →Action Items
- 14:27, 30 November 2009 diff hist -1,908 (10) Removing all content from page current
- 14:27, 30 November 2009 diff hist -7 November 25, 2009 - Sequence Curation Flags →Action Items
- 14:26, 30 November 2009 diff hist +24 November 25, 2009 - Sequence Curation Flags →Action Items
- 14:25, 30 November 2009 diff hist +1 November 25, 2009 - Sequence Curation Flags →Action Items
- 14:23, 30 November 2009 diff hist +40 November 25, 2009 - Sequence Curation Flags →Action Items
- 14:21, 30 November 2009 diff hist +1,364 (10)
- 14:06, 30 November 2009 diff hist -2 (10)
- 14:06, 30 November 2009 diff hist +75 (10)
- 14:05, 30 November 2009 diff hist +3 (10)
- 14:05, 30 November 2009 diff hist -1 (10)
- 14:05, 30 November 2009 diff hist +2 (10)
- 14:04, 30 November 2009 diff hist +2 (10)
- 14:03, 30 November 2009 diff hist -5 (10)
- 14:02, 30 November 2009 diff hist +178 (10)
- 13:59, 30 November 2009 diff hist +123 (10)
- 13:58, 30 November 2009 diff hist +169 N (10) New page: ! 00031858 ! checked ! 2009-09-04 ! 00035125 ! checked ! 2009-11-02 ! 00035152 ! bah-1 rescue was achieved with a single full length gene, ZK1025.7 ! 2009-10-18
- 13:52, 30 November 2009 diff hist +16 November 25, 2009 - Sequence Curation Flags →Action Items
- 13:51, 30 November 2009 diff hist +12 November 25, 2009 - Sequence Curation Flags →Action Items
- 13:50, 30 November 2009 diff hist +41 November 25, 2009 - Sequence Curation Flags →Action Items
- 15:04, 25 November 2009 diff hist +23 November 25, 2009 - Sequence Curation Flags →Action Items
- 14:54, 25 November 2009 diff hist -214 November 25, 2009 - Sequence Curation Flags →Current status of each sequence-related flag
- 14:50, 25 November 2009 diff hist 0 November 25, 2009 - Sequence Curation Flags →Call information
- 14:49, 25 November 2009 diff hist +92 November 25, 2009 - Sequence Curation Flags →Participants
- 14:47, 25 November 2009 diff hist +178 November 25, 2009 - Sequence Curation Flags →Call information
- 14:45, 25 November 2009 diff hist +1 November 25, 2009 - Sequence Curation Flags →Action Items
- 14:44, 25 November 2009 diff hist +6 November 25, 2009 - Sequence Curation Flags →Action Items
- 14:44, 25 November 2009 diff hist -10 November 25, 2009 - Sequence Curation Flags →Action Items
- 14:39, 25 November 2009 diff hist +8 November 25, 2009 - Sequence Curation Flags →Action Items
- 14:38, 25 November 2009 diff hist +509 November 25, 2009 - Sequence Curation Flags →Minutes, Action Items
- 14:28, 25 November 2009 diff hist +16 November 25, 2009 - Sequence Curation Flags →Current status of each sequence-related flag
- 14:26, 25 November 2009 diff hist +34 November 25, 2009 - Sequence Curation Flags →Current status of each sequence-related flag
- 14:25, 25 November 2009 diff hist +504 November 25, 2009 - Sequence Curation Flags →Current status of each sequence-related flag
- 12:27, 25 November 2009 diff hist +1 November 25, 2009 - Sequence Curation Flags →Pipelines and options for flagging
- 12:27, 25 November 2009 diff hist +52 November 25, 2009 - Sequence Curation Flags →Pipelines and options for flagging
- 12:20, 25 November 2009 diff hist +160 November 25, 2009 - Sequence Curation Flags →Pipelines and options for flagging
- 12:12, 25 November 2009 diff hist +21 November 25, 2009 - Sequence Curation Flags →Pipelines and options for flagging
- 12:03, 25 November 2009 diff hist +79 November 25, 2009 - Sequence Curation Flags →Pipelines and options for flagging
- 12:01, 25 November 2009 diff hist +12 November 25, 2009 - Sequence Curation Flags →Pipelines and options for flagging
- 11:59, 25 November 2009 diff hist +167 November 25, 2009 - Sequence Curation Flags →Pipelines and options for flagging