100209 seqchange

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WBPaper ID	SVM confidence	True positive for seqchange?	True positive for genesymbol?	Comments
WBPaper00035194	high	Sort of	No	Discusses extent of 2 tm deletions; not first description of glf-1 in the literature.
WBPaper00035201	high	No	No	Paper discussed mRNA sequences bound to protein. The term 'sequence' in various forms was used frequently.
WBPaper00035202	high	Sort of	No	Describes a plc-4 mutant allele made using a new knock-out strategy.
WBPaper00035203	high	No	No	This paper used a lot of plasmid constructs and talked about promoter sequences.
WBPaper00035211	high	Sort of	No	Sequencing of mutant alleles not done in this paper, but a lot of discussion about the molecular nature of the alleles used for the experiments.
WBPaper00035215	high	Yes	Yes	rpa-9/nol-6 allelism and sequence of point mutation
WBPaper00035219	high	Yes	Yes	First detailed molecular characterization of let-721 gene and protein.
WBPaper00035221	high	Yes	No	New sequencing technology (galign) describing lots of mutations.
WBPaper00035222	high	Yes	Yes	mrt-1 cloning and characterization
WBPaper00035226.sup.6	medium	No	No	A phenotype figure.

Precision: 50-70%

Recall: 100% (for both data types, but haven't checked entire list of supplements)

Correlation between seqchange and genesymbol: 30%

Assessing Negatives:

Negatives

So far, 17/17 Negatives are True Negatives:

WBPaper00035204

WBPaper00035205

WBPaper00035206

WBPaper00035212

WBPaper00035214

WBPaper00035216

WBPaper00035220

WBPaper00035223

WBPaper00035224

WBPaper00035225

WBPaper00035226

WBPaper00035222.sup.1

WBPaper00035222.sup.2

WBPaper00035222.sup.3

WBPaper00035222.sup.4

WBPaper00035222.sup.5

WBPaper00035222.sup.6

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