Difference between revisions of "Caltech documentation"
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<div style="column-count:3;-moz-column-count:3;-webkit-column-count:3"> | <div style="column-count:3;-moz-column-count:3;-webkit-column-count:3"> | ||
*[[Antibody]] | *[[Antibody]] | ||
| + | *[[Automated gene descriptions 2.0]] | ||
*[[Concise Descriptions]] | *[[Concise Descriptions]] | ||
*[[Construct]] | *[[Construct]] | ||
| + | *[[Evidence Code Ontology]] | ||
| + | *[[Expression Cluster]] | ||
*[[Expression Pattern]] | *[[Expression Pattern]] | ||
*[[Gene Class Descriptions]] | *[[Gene Class Descriptions]] | ||
| Line 30: | Line 33: | ||
*[[Gene-Paper Associations]] | *[[Gene-Paper Associations]] | ||
*[[Gene Regulation]] | *[[Gene Regulation]] | ||
| + | *[[Generation of automated descriptions]] | ||
*[[Genotype]] | *[[Genotype]] | ||
*[[Life_Stage]] | *[[Life_Stage]] | ||
| Line 38: | Line 42: | ||
*[[Physical Interactions]] | *[[Physical Interactions]] | ||
*[[Pictures]] | *[[Pictures]] | ||
| + | *[[Relations Ontology]] | ||
*[[RNAi]] | *[[RNAi]] | ||
*[[Sequence Feature]] | *[[Sequence Feature]] | ||
| + | *[[Strain]] | ||
*[[Topic_pages]] | *[[Topic_pages]] | ||
*[[Transgenes]] | *[[Transgenes]] | ||
| Line 56: | Line 62: | ||
*[[Phenotype Ontology Development]] | *[[Phenotype Ontology Development]] | ||
*[[Community Curation]] | *[[Community Curation]] | ||
| + | *[[LEGO Curation]] | ||
==Curation Progress== | ==Curation Progress== | ||
Latest revision as of 17:36, 25 April 2023
Contents
- 1 First-pass flagging
- 2 Automation and Text Mining Approaches
- 3 Citace
- 4 Datatype
- 5 Paper Categorization
- 6 Paper ID Conversion CGI
- 7 Working Group
- 8 Curation Progress
- 9 postgres
- 10 Caltech weekly meetings
- 11 Conference Calls
- 12 Phenote
- 13 Ontology Annotator
- 14 Textpresso
- 15 SVMs for First Pass Curation
- 16 GSA markup
- 17 User Guide 2010
- 18 Interesting, Not-yet-modelled Data Index
- 19 Requested details for the Citace upload report
- 20 Release note requests from Caltech
First-pass flagging
- First-pass flagging pipelines
- Instructions for the first pass curator:
- Datatypes flagged through the first-pass forms: Datatypes flagged
Automation and Text Mining Approaches
Citace
Datatype
- Antibody
- Automated gene descriptions 2.0
- Concise Descriptions
- Construct
- Evidence Code Ontology
- Expression Cluster
- Expression Pattern
- Gene Class Descriptions
- Gene Interaction
- Gene Ontology
- Gene-Paper Associations
- Gene Regulation
- Generation of automated descriptions
- Genotype
- Life_Stage
- Molecule
- Movie
- Paper Pipeline
- Phenotypes
- Physical Interactions
- Pictures
- Relations Ontology
- RNAi
- Sequence Feature
- Strain
- Topic_pages
- Transgenes
- Disease and Drugs
- Drugs
- Variation Concise Descriptions
Paper Categorization
Paper ID Conversion CGI
Working Group
Curation Progress
postgres
- WBGene information and status pipeline
- Source and maintenance of non-WBGene info
- OA forms, tables, scripts, etc
- Postgres queries
- Updating Postgres with New WS Information
Caltech weekly meetings
Conference Calls
Phenote
Ontology Annotator
Textpresso
SVMs for First Pass Curation
GSA markup
- GSA Markup Workflow
- GSA Markup SOP
- Pipeline image
- Linking scripts
- Entity classes and problems
- Future Entities for markup
- GSA Markup Meeting Notes
- GO entity markup
User Guide 2010
Interesting, Not-yet-modelled Data Index
