Difference between revisions of "Caltech documentation"
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* [[Linking_script_pipeline | Linking scripts]] | * [[Linking_script_pipeline | Linking scripts]] | ||
* [[Entity classes and problems]] | * [[Entity classes and problems]] | ||
| − | ** [[ | + | ** [[Example marked up papers]] |
** [[Markup excerpts]] | ** [[Markup excerpts]] | ||
*[[Future Entities for markup]] | *[[Future Entities for markup]] | ||
Revision as of 19:57, 26 August 2015
Contents
- 1 First-pass flagging
- 2 Automation and Text Mining Approaches
- 3 Citace
- 4 Datatype
- 5 Paper Categorization
- 6 Paper ID Conversion CGI
- 7 Working Group
- 8 Curation Progress
- 9 postgres
- 10 Caltech weekly meetings
- 11 Conference Calls
- 12 Phenote
- 13 Ontology Annotator
- 14 Textpresso
- 15 SVMs for First Pass Curation
- 16 GSA markup
- 17 User Guide 2010
- 18 Interesting, Not-yet-modelled Data Index
- 19 Requested details for the Citace upload report
- 20 Release note requests from Caltech
First-pass flagging
- First-pass flagging pipelines
- Instructions for the first pass curator:
- Datatypes flagged through the first-pass forms: Datatypes flagged
Automation and Text Mining Approaches
Citace
Datatype
- Antibody
- Concise Descriptions
- Construct
- Expression Pattern
- Gene Class Descriptions
- Gene Interaction
- Gene Ontology
- Gene-Paper Associations
- Gene Regulation
- Life_Stage
- Molecule
- Movie
- Paper Pipeline
- Phenotypes
- Physical Interactions
- Pictures
- RNAi
- Sequence Feature
- Topic_pages
- Transgenes
- Disease and Drugs
- Drugs
Paper Categorization
Paper ID Conversion CGI
Working Group
Curation Progress
postgres
- WBGene information and status pipeline
- Source and maintenance of non-WBGene info
- OA forms, tables, scripts, etc
- Postgres queries
- Updating Postgres with New WS Information
Caltech weekly meetings
Conference Calls
Phenote
Ontology Annotator
Textpresso
SVMs for First Pass Curation
GSA markup
- GSA Markup Workflow
- GSA Markup SOP
- Pipeline image
- Linking scripts
- Entity classes and problems
- Future Entities for markup
- GSA Markup Meeting Notes
- GO entity markup
User Guide 2010
Interesting, Not-yet-modelled Data Index
