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Create the page "Clone" on this wiki! See also the search results found.

Page title matches

• WormBase Model:Clone
  // ?Clone class ?Clone Evidence #Evidence
  10 KB (1,176 words) - 22:24, 18 March 2014

Page text matches

• WormBase Model:Grid row
  ?Grid_row UNIQUE Clone UNIQUE ?Clone XREF Gridded REPEAT ?Mixed_grid_row UNIQUE Clone UNIQUE ?Clone XREF Gridded #Mixed_grid_row
  320 bytes (41 words) - 13:36, 4 October 2010
• WormBase Model:Grid data
  Positive Hybridizes_to ?Clone Positive_product ?Clone
  679 bytes (66 words) - 13:28, 4 October 2010
• WormBase Model:Mixed grid row
  ?Mixed_grid_row UNIQUE Clone UNIQUE ?Clone XREF Gridded #Mixed_grid_row
  196 bytes (24 words) - 14:45, 4 October 2010
• WormBase Model:Contig
  Clone ?Clone XREF pMap
  265 bytes (31 words) - 09:35, 4 October 2010
• WBConfCall 2012.05.17-Agenda and Minutes
  == 2. RNAi clone mapping efforts == What is the current status of clone mapping efforts for RNAi objects at Hinxton?
  1 KB (205 words) - 16:55, 17 May 2012
• WBConfCall 2014.05.01-Agenda and Minutes
  2. Add a "Clone" tag to the ?RNAi model and a "Used_in_RNAi" tag to the ?Clone model (Chris) Clone
  868 bytes (139 words) - 15:56, 1 May 2014
• Reporting sequence for RNAi
  '''Use of cDNA/EST/OST Clone names''' Reporting the cDNA/EST/OST clone names (e.g. AF071375, yk275g9, OSTR215B4_1)
  998 bytes (156 words) - 18:56, 16 August 2010
• WBConfCall 2012.03.15-Agenda and Minutes
  === RNAi clone mapping === Hinxton is almost set up to take the RNAi clone mapping over from Caltech.
  1 KB (240 words) - 09:37, 16 March 2012
• WormBase Model:Pos neg data
  Clone_1 UNIQUE ?Clone XREF Pos_neg_data Clone_2 UNIQUE ?Clone XREF Pos_neg_data
  1 KB (146 words) - 08:38, 5 October 2010
• WormBase Model:Strain
  Clone ?Clone XREF In_strain
  1 KB (119 words) - 16:43, 11 April 2013
• WormBase Model:Accession number
  Clone ?Clone // added [031120 krb]
  1 KB (141 words) - 10:05, 15 November 2011
• User Guide:WBNavigation
  *[[UserGuide:Clone | Clone/Plasmid Page]]
  1 KB (146 words) - 06:23, 12 August 2010
• WormBase Model:Clone
  // ?Clone class ?Clone Evidence #Evidence
  10 KB (1,176 words) - 22:24, 18 March 2014
• WormBase Source Code
  $ hg clone http://bitbucket.org/tharris/wormbase/ $ hg clone https://username@bitbucket.org/tharris/wormbase
  4 KB (664 words) - 13:20, 2 June 2014
• WormBase Model:PCR product
  Clone ?Clone XREF PCR_product // added [krb 031126]
  2 KB (176 words) - 16:09, 4 October 2010
• WormBase Model:Map
  Clone ?Clone XREF Map
  2 KB (208 words) - 14:36, 4 October 2010
• WormBase Model:Map position
  With_clone UNIQUE ?Clone #Map_offset
  611 bytes (58 words) - 14:40, 4 October 2010
• WormBase Model:Rearrangement
  Clone_inside ?Clone XREF Inside_rearr ?Author Clone_outside ?Clone XREF Outside_rearr ?Author
  3 KB (265 words) - 08:51, 5 October 2010
• Source and maintenance of non-WBGene info
  Information for gene, variation, clone, strain, rearrangement, and laboratory are provided in a nightly json dump -populates obo_name/data_<datatype> tables where <datatype> is variation, clone, strain, or rearrangement
  8 KB (1,375 words) - 05:12, 21 April 2020
• AceDB classes tutorial
  ! A Clone ! Clone
  2 KB (281 words) - 21:51, 11 August 2010
• Cosmids/YACs
  ...sts_new.png|link=https://www.sanger.ac.uk/tool/c-elegans-and-pombes-clones|Clone Requests]] There are seven different types of "Clone" objects in WormBase:
  12 KB (1,857 words) - 16:21, 5 January 2021
• WormBase Model:Database field
  ?Clone
  700 bytes (98 words) - 09:44, 4 October 2010
• WS226 Models.wrm
  * ?Clone
  1 KB (124 words) - 11:01, 19 April 2011
• (4 papers)
  ...to sequences reported in the Wormbase, except that the yk720e2 crn-6 cDNA clone contains a base substitution (A322G, Ile108Val).
  1 KB (193 words) - 18:58, 10 August 2010
• Reagents
  *[http://www.lifesciences.sourcebioscience.com/clone-products/mirna--rnai-resources.aspx RNAi libraries (Source BioScience)] &lt;a href="ftp://caltech.wormbase.org/pub/annots/rnai/"&gt;RNAi clone mapping&lt;/a&gt;,
  2 KB (271 words) - 15:10, 22 September 2021
• AceDB classes
  * [[WormBase Model:Clone|Clone]]
  4 KB (568 words) - 11:06, 23 May 2011
• WS107
  ...7.gz - Latest set of ORF connections to each Yuji Kohara EST clone ...terpolated_map_positions.WS107.gz - Interpolated map positions for each clone
  6 KB (659 words) - 11:17, 21 December 2011
• New Paper Model - Model and Changes to Pipeline
  Clone ?Clone XREF Reference #Evidence Clone ?Clone XREF Reference #Evidence
  10 KB (928 words) - 18:34, 2 May 2011
• WormBase Model:Transgene
  Clone ?Clone XREF Transgene Text Clone ?Clone XREF Transgene Text
  13 KB (1,341 words) - 20:12, 22 September 2015
• WormBase Model:Paper
  Clone ?Clone XREF Reference #Evidence
  5 KB (471 words) - 16:07, 4 October 2010
• WormBase Model:Expr pattern
  Clone ?Clone XREF Expr_pattern //this is to record plasmid names for the study, not used
  4 KB (497 words) - 22:42, 6 December 2010
• WebDev 2013.05.20-Agenda and Minutes
  * will clone intermine server ** TH: dns, email, will clone instance, add disk space
  2 KB (293 words) - 15:57, 24 May 2013
• WebDev 2009.07.29-Agenda and Minutes
  * TH: Clone for every release, so that we have a checklist for each release, at a glanc
  1 KB (203 words) - 10:43, 29 July 2009
• UserGuide:Interval Search
  ...t more than 2 cM apart, using the names of two genetically mapped mutants, clone names, identified genes, or predicted genes (for example, evl-7 to sup-23).
  1 KB (198 words) - 18:29, 17 August 2010
• In vitro flagging
  ...rved particularly with older papers that describe an 'activity' but do not clone the gene. These papers would be SVM positive for in vitro training, but ar
  1 KB (178 words) - 00:04, 2 February 2011
• UserGuide:ePCR
  ...GenBank accession may not precisely correspond to the insert of a physical clone in that object. Click on the hyper link for details at NCBI. ...ect. Again, these may not precisely correspond to the insert of a physical clone.
  3 KB (523 words) - 18:34, 17 August 2010
• Site Map
  *[http://www.wormbase.org/db/seq/clone?name=JC8 Clone Report]
  3 KB (374 words) - 18:22, 9 March 2020
• WebDev 2010.03.31-Agenda and Minutes
  '''API for Sequence, Protein, Clone, Variation, Strain (overseen by Norie with help from all)'''
  2 KB (216 words) - 16:54, 31 March 2010
• UserGuide:Advanced Search
  ...select from, and you can view the whole list of each class, not only Cell, Clone and Strain, but also those that cannot be selected in Basic Searches, such
  2 KB (273 words) - 18:24, 17 August 2010
• Example Pages
  <td>Clone</td> <td>[http://dev.wormbase.org:8023/species/c_elegans/clone/pC31 pC31]</td>
  8 KB (1,190 words) - 23:28, 12 March 2012
• WormBase Model:Locus
  Negative_clone ?Clone XREF Negative_locus ?Author
  2 KB (193 words) - 14:28, 4 October 2010
• WBConfCall 2013.08.01-Agenda and Minutes
  ...hand over to Hinxton: stlace is now taken over by Hinxton. All C. elegans clone, sequence and genes are now merged into a single database.
  2 KB (232 words) - 09:58, 2 August 2013
• UserGuide:Display Tools
  ...ression Pattern", while in other places it may be called "Cell Report" or "Clone Report".
  2 KB (266 words) - 18:26, 17 August 2010
• WebDev 2010.04.28-Agenda and Minutes
  * Abby looking to clone Zheng's VM to wb-biomart.oicr.on.ca
  2 KB (233 words) - 13:23, 29 April 2010
• Downloads
  == RNAi clone mapping ==
  8 KB (1,219 words) - 22:33, 24 October 2011
• WebDev 2011.05.25-Agenda and Minutes
  clone - - - -
  2 KB (243 words) - 20:29, 25 May 2011
• WormBase Model:Gene
  Positive_clone ?Clone XREF Positive_gene #Evidence Negative_clone ?Clone XREF Negative_gene #Evidence
  7 KB (712 words) - 10:40, 4 October 2010
• Linking To WormBase
  ...c/epic?name=X;class=Clone</code>, where X is replaced with the name of the clone. For example: &lt;a href="http://www.wormbase.org/db/misc/epic?name=F59E12;class=Clone"&gt;F59E12&lt;/a&gt;&lt;br&gt;
  6 KB (1,087 words) - 15:07, 19 June 2014
• Mark up policy
  '''cDNA clone.''' ''yk1106g06.3'' → Sequence Summary page: '''Now looking to clone class? (see below and e-mail of 1 July 2009 and 29 July)'''<br>
  14 KB (2,365 words) - 21:14, 23 July 2013
• Expression pattern remodel
  *‪ Sequence: 8 objects I could consolidate with other classes -e.g. clone‬ Clone ?Clone XREF Expr_pattern
  16 KB (1,695 words) - 08:29, 12 May 2014
• Website:Data Structure (old page)
  ::'''Clone'''=>
  4 KB (358 words) - 17:11, 4 May 2010
• WormBase-Caltech Weekly Calls February 2015
  === Clone Mapper Software === * We will adopt Clone Mapper for RNAi clone mapping
  8 KB (1,120 words) - 16:19, 5 March 2015
• WormBase Model:Sequence
  Clone_left_end ?Clone XREF Clone_left_end UNIQUE Int Clone_right_end ?Clone XREF Clone_right_end UNIQUE Int
  12 KB (1,258 words) - 09:29, 5 October 2010
• WS180
  ...nterpolated_map_positions.WS180.gz - Interpolated map positions for each clone Total number of bases has increased due to a sequence update for clone CTEL3X.
  7 KB (771 words) - 10:52, 21 December 2011
• Updating ontology (.obo) files for the OA
  ...g/index.php/Source_and_maintenance_of_non-WBGene_info here] for variation, clone, strain, rearrangement, and laboratory obo table, basically these files are ===Clone info===
  10 KB (1,644 words) - 18:48, 13 August 2020
• WebDev 2010.04.07-Agenda and Minutes
  '''API for Sequence, Protein, Clone, Variation, Strain (overseen by Norie with help from all)'''
  2 KB (313 words) - 16:52, 7 April 2010
• WebDev 2010.10.20-Agenda and Minutes
  * Rich support for five classes (Gene, Variation, Sequence, Protein, Clone)
  2 KB (251 words) - 20:35, 20 October 2010
• UserGuide:How to Obtain Reagents
  *How do I get a YK cDNA clone?
  2 KB (382 words) - 10:45, 1 August 2013
• WormBase-Caltech Weekly Calls March 2014
  ...discussing how to handle plasmids/vectors, whether they should go in the ?Clone class (there is precedence) ...g including all plasmids and vectors (e.g. AddGene & Fire vectors) to the ?Clone class which can then be referenced within the ?Construct class
  8 KB (1,218 words) - 17:46, 2 April 2014
• BASIC PROTOCOL 3: EXAMINING A GENE IN C. ELEGANS
  ...m, 1998), and "number" denotes an otherwise anonymous gene embedded in the clone).
  5 KB (855 words) - 19:57, 11 August 2010
• WBConfCall 2018.05.17-Agenda and Minutes
  ...onfusion to users, though, who may need to validate the sequence against a clone they order from Don Moerman's group? **Karen has found some strain and clone names that are the same.
  5 KB (816 words) - 16:43, 17 May 2018
• WS131
  ...31.gz - Latest set of ORF connections to each Yuji Kohara EST clone ...nterpolated_map_positions.WS131.gz - Interpolated map positions for each clone
  6 KB (669 words) - 11:18, 21 December 2011
• WormBase Model:RNAi
  // such as yk clone; not UNIQUE anymore
  3 KB (312 words) - 15:14, 15 July 2010
• WS117
  ...7.gz - Latest set of ORF connections to each Yuji Kohara EST clone ...terpolated_map_positions.WS117.gz - Interpolated map positions for each clone
  6 KB (695 words) - 11:17, 21 December 2011
• WS122
  ...- Latest set of ORF connections to each Yuji Kohara EST clone ..._interpolated_map_positions.WS122.gz - Interpolated map positions for each clone
  6 KB (721 words) - 11:18, 21 December 2011
• Unused Attributes
  | :clone/does-not-hybridize-to | ?Clone
  35 KB (4,174 words) - 10:52, 2 February 2015
• WS112
  ...2.gz - Latest set of ORF connections to each Yuji Kohara EST clone ...terpolated_map_positions.WS112.gz - Interpolated map positions for each clone
  6 KB (735 words) - 11:17, 21 December 2011
• WormBase Newsletter No. 2, February 2003
  == Genomic Clone Requests ==
  7 KB (1,180 words) - 11:00, 21 December 2011
• WS154
  ...nterpolated_map_positions.WS154.gz - Interpolated map positions for each clone 2) The clone C24G6 had incorrect wublastx data in the previous release of WormBase
  7 KB (749 words) - 11:08, 21 December 2011
• WS237 Models.wrm
  *Clone
  3 KB (475 words) - 14:53, 19 February 2013
• Fosmids
  ...com/products/life-science-research/clones/genomic-clones/c-elegans-genomic-clone-collections/c-elegans-fosmid-library/ link] for their distribution of Don M [http://elegans.bcgsc.bc.ca/perl/fosmid/CloneSearch/ Search for your clone]
  3 KB (496 words) - 10:12, 15 September 2017
• WormBase-Caltech Weekly Calls October 2012
  *Gene pages could then display "THE" RNAi clone for a gene per library (e.g. Vidal or Ahringer), along with resource addres *If multiple clones per gene, indicate which clone is unique to that gene
  5 KB (843 words) - 17:26, 1 November 2012
• WormBase Model:Construct
  Clone ?Clone XREF Construct Clone "pGEM-5
  20 KB (2,339 words) - 18:04, 23 September 2015
• Entity classes and problems
  *Clone '''Clone''' -> ''acedb on spica''; Sequence Summary page<br>
  10 KB (1,696 words) - 17:21, 25 July 2013
• WS127
  ...7.gz - Latest set of ORF connections to each Yuji Kohara EST clone ...terpolated_map_positions.WS127.gz - Interpolated map positions for each clone
  7 KB (872 words) - 11:18, 21 December 2011
• WBConfCall 2016.07.07-Agenda and Minutes
  ...equence objects that can be mapped and then associate these objects with a clone and then a construct (the latter 2 having metadata and connectivity). To b
  3 KB (457 words) - 19:24, 7 July 2016
• WS179
  ...nterpolated_map_positions.WS179.gz - Interpolated map positions for each clone | Clone | Type | Flank | Change | Flank |
  8 KB (843 words) - 10:53, 21 December 2011
• WBConfCall 2012.02.02-Agenda and Minutes
  Clone ?Clone // added [031120 krb]
  8 KB (879 words) - 09:32, 3 February 2012
• UserGuide:Sequence Page
  ...gsae ortholog (where one is known to exist). Other data such as the source clone, sequencing center responsible for the data, microarray data, remarks on th
  3 KB (490 words) - 18:31, 17 August 2010
• WormBase-Caltech Weekly Calls April 2021
  === OpenBiosystems RNAi clone IDs === * User looking to map Open Biosystems RNAi clone names to WB clone names
  11 KB (1,782 words) - 17:55, 13 May 2021
• AceOjbect Redesign Page
  | [[WormBase Model:Clone|Clone]]
  12 KB (1,559 words) - 18:14, 15 June 2011
• WS185
  ...nterpolated_map_positions.WS185.gz - Interpolated map positions for each clone
  6 KB (680 words) - 07:37, 11 January 2008
• Issues-9/24/2013
  * #1644 - Error messages Sequence/Clone page - AC
  3 KB (416 words) - 18:30, 24 September 2013
• WS186
  ...nterpolated_map_positions.WS186.gz - Interpolated map positions for each clone
  6 KB (683 words) - 05:51, 3 April 2008
• DictyBase
  #[[Clone CCC curation form for dictyBase - Juancarlos, Kimberly]]
  3 KB (439 words) - 21:25, 6 November 2012
• Software Life Cycle: 4. Updating The Production Servers
  # clone the repository git clone git://github.com/mishoo/UglifyJS.git
  8 KB (1,229 words) - 16:17, 30 December 2013
• WBConfCall 2022.03.17-Agenda and Minutes
  ...NAi mapping criteria, which genes are predicted to be knocked down by each clone
  3 KB (563 words) - 03:27, 19 March 2022
• WormBase Newsletter No. 3, October 2003
  ...been a 2.4% increase in the overall size of the genome, mainly due to the clone and sequence gaps being closed with the final gap closure in October 2002 f
  10 KB (1,509 words) - 15:40, 24 September 2007
• Contributing Phenotype Connections
  ...ies fields for optional data, pertaining to the nature of the allele, RNAi clone, or transgene with respect to the observed phenotypes indicated in the form ...ll location (e.g. "Source BioScience II-6H13") or the sequence of the RNAi clone (e.g. "ACGTATGCTAG...."). Because RNA interference experiments can now be c
  26 KB (4,016 words) - 21:32, 8 April 2020
• WormBase-Caltech Weekly Calls October 2014
  * We want meta-data, especially sequence data (dsRNA, allele, clone, etc.) ...gent rules? e.g. sequence submission for clones and dsRNA sequences versus clone names or more ambiguous identifiers
  7 KB (1,079 words) - 19:04, 6 November 2014
• Transgene curation pipeline
  * Remark "Clone = " ** "Clone = "
  9 KB (1,321 words) - 21:59, 3 May 2020
• WS183
  ...nterpolated_map_positions.WS183.gz - Interpolated map positions for each clone
  7 KB (800 words) - 10:01, 8 November 2007
• Website:WormMine
  > git clone git@github.com:WormBase/website-intermine-master.git wormmine > git clone git://github.com/WormBase/website-intermine-sources.git wormmine
  9 KB (1,231 words) - 14:55, 19 June 2014
• Construct
  |cns_publicname||Public Name||/Clone: values from trp_constructionsummary |cns_clone|| Clone|| copy from trp_clone NOTE: might have been deemed empty and deleted alread
  10 KB (1,537 words) - 17:05, 28 May 2021
• WS184
  ...nterpolated_map_positions.WS184.gz - Interpolated map positions for each clone
  7 KB (831 words) - 07:36, 11 January 2008
• Unused evidence
  :clone/evidence EMPTY
  7 KB (604 words) - 18:21, 11 November 2014
• WBConfCall 2014.07.03-Agenda and Minutes
  2) Clone Class additional ?Sequence connections to remove ambiguity - Paul === Clone ===
  15 KB (2,374 words) - 16:00, 17 July 2014
• WS208
  ...nterpolated_map_positions.WS208.gz - Interpolated map positions for each clone
  5 KB (581 words) - 16:50, 21 December 2011
• WS212
  ...nterpolated_map_positions.WS212.gz - Interpolated map positions for each clone
  5 KB (582 words) - 11:16, 21 December 2011
• Gene Expression micropublications
  and -> sequence (free text), reporter (ontology on reporters), clone (ontology on clones) ...nstruct OA clone field: id: D1001 name: "D1001"remark: "C. elegans genomic clone not used in the final reference genome, submitted by The C. elegans Genome
  21 KB (3,194 words) - 02:08, 17 May 2018
• WormBase Model:Variation
  Positive_clone ?Clone XREF Positive_variation #Evidence
  8 KB (853 words) - 23:50, 16 April 2014
• WormBase-Caltech Weekly Calls October 2019
  *** Clone *** Clone
  13 KB (2,025 words) - 16:28, 7 November 2019
• WormBase-Caltech Weekly Calls March 2011
  ...to happen on production releases; would take production database off line, clone it, and upload it to all production nodes *Clones present need to be parsed into clone class?
  13 KB (2,097 words) - 22:48, 7 April 2011
• WormBase-Caltech Weekly Calls May 2011
  Clone Model Update *Working with current clone model to test adding plasmid objects
  9 KB (1,302 words) - 16:38, 2 June 2011
• WormBase-Caltech Weekly Calls August 2011
  *We should know exactly what the clone is (sequence)
  4 KB (650 words) - 17:08, 1 September 2011
• WS204
  ...nterpolated_map_positions.WS204.gz - Interpolated map positions for each clone
  6 KB (648 words) - 16:16, 21 December 2011
• WS173
  ...nterpolated_map_positions.WS173.gz - Interpolated map positions for each clone
  6 KB (639 words) - 10:55, 21 December 2011
• WS187
  ...nterpolated_map_positions.WS187.gz - Interpolated map positions for each clone
  6 KB (647 words) - 16:43, 21 December 2011
• WS199
  ...nterpolated_map_positions.WS199.gz - Interpolated map positions for each clone
  6 KB (661 words) - 16:51, 21 December 2011
• WS171
  ...nterpolated_map_positions.WS171.gz - Interpolated map positions for each clone
  6 KB (652 words) - 10:55, 21 December 2011
• WS207
  ...nterpolated_map_positions.WS207.gz - Interpolated map positions for each clone
  6 KB (675 words) - 16:42, 21 December 2011
• Unit Testing
  ...e directory into your [https://github.com/WormBase/website Github Website] clone.
  8 KB (936 words) - 18:39, 18 June 2014
• WS203
  ...nterpolated_map_positions.WS203.gz - Interpolated map positions for each clone
  6 KB (662 words) - 16:50, 21 December 2011
• WS163
  ...nterpolated_map_positions.WS163.gz - Interpolated map positions for each clone
  6 KB (645 words) - 10:57, 21 December 2011
• FIGURE(S)
  ...riggsae''), direct evidence for gene activity (ESTs and a cDNA), a genomic clone (archived in Genbank), and complexities of the gene‚Äôs structure (incl ...ôs insert may better encompass the gene‚Äôs full 5‚Äô and 3‚Äô flanks. The clone map search allows users to see the entire set of clones available for a gen
  19 KB (3,061 words) - 23:01, 13 August 2010
• WBConfCall 2022.08.18-Agenda and Minutes
  * Clone, fosmid and cosmid availability [MZ]
  5 KB (787 words) - 18:10, 25 August 2022
• WS158
  ...nterpolated_map_positions.WS158.gz - Interpolated map positions for each clone
  6 KB (673 words) - 11:07, 21 December 2011
• UserGuide:Browse Genome
  ...seful for designing experiments that require the exact sequence of a site (clone construction, PCR, etc.)
  6 KB (975 words) - 18:25, 17 August 2010
• WS209
  ...nterpolated_map_positions.WS209.gz - Interpolated map positions for each clone
  6 KB (687 words) - 16:50, 21 December 2011
• WS198
  ...nterpolated_map_positions.WS198.gz - Interpolated map positions for each clone
  6 KB (692 words) - 16:51, 21 December 2011
• WS197
  ...nterpolated_map_positions.WS197.gz - Interpolated map positions for each clone
  6 KB (672 words) - 16:43, 21 December 2011
• WS201
  ..._interpolated_map_positions.WS201.gz - Interpolated map positions for each clone
  6 KB (665 words) - 16:42, 21 December 2011
• WS175
  ...nterpolated_map_positions.WS175.gz - Interpolated map positions for each clone
  6 KB (680 words) - 10:54, 21 December 2011
• WS200
  ...nterpolated_map_positions.WS200.gz - Interpolated map positions for each clone
  6 KB (722 words) - 16:43, 21 December 2011
• WS146
  ...nterpolated_map_positions.WS146.gz - Interpolated map positions for each clone
  6 KB (670 words) - 11:09, 21 December 2011
• UserGuide:SimpleMine
  RNAi Clone: RNAi library clones for the gene and their locations (if available), for e
  6 KB (847 words) - 23:51, 9 May 2023
• WS135
  ...nterpolated_map_positions.WS135.gz - Interpolated map positions for each clone
  6 KB (689 words) - 11:19, 21 December 2011
• WS160
  ...nterpolated_map_positions.WS160.gz - Interpolated map positions for each clone
  6 KB (706 words) - 10:50, 21 December 2011
• WS214
  ...nterpolated_map_positions.WS214.gz - Interpolated map positions for each clone
  6 KB (709 words) - 16:49, 21 December 2011
• WBConfCall 2022.09.01-Agenda and Minutes
  * Fosmid and clone availability [https://github.com/WormBase/website/issues/8649 #8649]
  6 KB (982 words) - 16:54, 1 September 2022
• WS205
  ...nterpolated_map_positions.WS205.gz - Interpolated map positions for each clone
  6 KB (711 words) - 16:31, 21 December 2011
• WormBase-Caltech Weekly Calls August 2016
  ** Can clone phenotype form, but remove requirement for publication; also add funding so
  4 KB (646 words) - 17:33, 1 September 2016
• Adding new Phenotype2GO annotations to postgres
  **Maybe best to clone and rename the script - something like populate_gop_OA_pheno2go_comparison.
  6 KB (1,087 words) - 19:52, 27 July 2015
• WS196
  ...nterpolated_map_positions.WS196.gz - Interpolated map positions for each clone
  6 KB (748 words) - 16:41, 21 December 2011
• WS210
  ...nterpolated_map_positions.WS210.gz - Interpolated map positions for each clone
  6 KB (721 words) - 16:46, 21 December 2011
• WS182
  ...nterpolated_map_positions.WS182.gz - Interpolated map positions for each clone
  6 KB (716 words) - 16:48, 21 December 2011
• WS189
  ...nterpolated_map_positions.WS189.gz - Interpolated map positions for each clone
  6 KB (668 words) - 11:01, 21 December 2011
• WS192
  ...nterpolated_map_positions.WS192.gz - Interpolated map positions for each clone
  6 KB (763 words) - 10:43, 21 December 2011
• WS142
  ...nterpolated_map_positions.WS142.gz - Interpolated map positions for each clone
  7 KB (720 words) - 11:09, 21 December 2011
• WS213
  ...nterpolated_map_positions.WS213.gz - Interpolated map positions for each clone
  6 KB (764 words) - 16:45, 21 December 2011
• WS138
  ...nterpolated_map_positions.WS138.gz - Interpolated map positions for each clone
  6 KB (740 words) - 11:19, 21 December 2011
• WS191
  ...nterpolated_map_positions.WS191.gz - Interpolated map positions for each clone
  6 KB (756 words) - 16:53, 21 December 2011
• GFF3 features (C. elegans)
  clone_insert_end:misc_feature (clone) clone_insert_start:misc_feature (clone)
  19 KB (1,985 words) - 23:13, 13 August 2010
• WS188
  ...nterpolated_map_positions.WS188.gz - Interpolated map positions for each clone
  6 KB (769 words) - 11:01, 21 December 2011
• WS211
  ...nterpolated_map_positions.WS211.gz - Interpolated map positions for each clone
  6 KB (766 words) - 16:38, 21 December 2011
• WS178
  ...nterpolated_map_positions.WS178.gz - Interpolated map positions for each clone
  7 KB (762 words) - 10:53, 21 December 2011
• WS176
  ...nterpolated_map_positions.WS176.gz - Interpolated map positions for each clone
  7 KB (783 words) - 10:46, 21 December 2011
• WS172
  ...nterpolated_map_positions.WS172.gz - Interpolated map positions for each clone
  7 KB (783 words) - 10:55, 21 December 2011
• WS216
  ...nterpolated_map_positions.WS216.gz - Interpolated map positions for each clone
  7 KB (818 words) - 11:10, 21 December 2011
• WS206
  ...nterpolated_map_positions.WS206.gz - Interpolated map positions for each clone
  7 KB (796 words) - 16:46, 21 December 2011
• WS202
  ...nterpolated_map_positions.WS202.gz - Interpolated map positions for each clone
  6 KB (770 words) - 11:06, 21 December 2011
• All OA tables
  ...|cns_publicname||Text||Public Name||use clone name if any||all||-|-||-||||/Clone: values from trp_constructionsummary and use to populated this field.|| ...ector, cosmid, fosmid, etc., used in the generation of the construct||3||||clone tables||-||||
  37 KB (5,333 words) - 19:07, 27 June 2019
• WormBase-Caltech Weekly Calls November 2014
  ...o (sequence, PCR_Product, Ahringer well location, Vidal well location, WB ?Clone object), Strain AND Genotype, Delivery method, Species, and Phenotype
  5 KB (843 words) - 16:32, 4 December 2014
• WormBase Models
  | [[WormBase Model:Clone|Clone]]
  16 KB (2,207 words) - 23:06, 9 January 2014
• WS195
  ...d_map_positions.WS195.gz&nbsp;&nbsp; - Interpolated map positions for each clone<br>xi)&nbsp;&nbsp; best_blastp_hits.WS195.gz&nbsp; - for each C. elegans Wo
  11 KB (1,614 words) - 16:52, 21 December 2011
• 2011 Advisory Board Meeting
  ** ''C.elegans'' monthly clone submission
  5 KB (644 words) - 22:02, 23 January 2013
• WS147
  ...nterpolated_map_positions.WS147.gz - Interpolated map positions for each clone
  7 KB (815 words) - 11:09, 21 December 2011
• WS170
  ...nterpolated_map_positions.WS170.gz - Interpolated map positions for each clone
  8 KB (820 words) - 10:51, 21 December 2011
• UserGuide:Gene Page
  Physically Mapped Clones: Links to Clone Report pages for clones to which the gene was mapped.
  7 KB (985 words) - 18:28, 17 August 2010
• WS177
  ...nterpolated_map_positions.WS177.gz - Interpolated map positions for each clone
  9 KB (819 words) - 10:53, 21 December 2011
• RNAi
  // such as yk clone; not UNIQUE anymore Clone ?Clone XREF Used_in_RNAi // Chris WS244
  29 KB (4,152 words) - 20:29, 30 July 2019
• WS181
  ...nterpolated_map_positions.WS181.gz - Interpolated map positions for each clone
  8 KB (885 words) - 16:47, 21 December 2011
• WS190
  ...nterpolated_map_positions.WS190.gz - Interpolated map positions for each clone
  8 KB (913 words) - 16:46, 21 December 2011
• WS169
  ...nterpolated_map_positions.WS169.gz - Interpolated map positions for each clone
  8 KB (787 words) - 10:56, 21 December 2011
• WS194
  ...nterpolated_map_positions.WS194.gz - Interpolated map positions for each clone
  8 KB (936 words) - 16:48, 21 December 2011
• WS193
  ...nterpolated_map_positions.WS193.gz - Interpolated map positions for each clone
  8 KB (944 words) - 16:52, 21 December 2011
• FAQs
  === I think there should be a gene at the end of clone 'X' but WormBase doesn't show any genes in this region. Why not? === ...responding sequence name, which are derived from the cosmid, fosmid or YAC clone on which they reside.
  67 KB (10,954 words) - 09:22, 19 February 2013
• WormBase Infrastructure
  ...ges created by gbrowse_img (such as those embedded on the Gene Summary and Clone pages) *are* cached as these can be considerably more "static" than individ
  9 KB (1,103 words) - 19:14, 18 June 2014
• WS174
  ...nterpolated_map_positions.WS174.gz - Interpolated map positions for each clone
  8 KB (938 words) - 10:54, 21 December 2011
• OA forms, tables, scripts, etc
  ...e<br> Anatomy<br> GO<br> Lifestage<br> Type<br> Transgene<br> Antibody<br> Clone<br> Strain<br> Laboratory<br> || ||Daniela Raciti|| |201309||Clone object and term info||||geneace nightly dumps||nightly_geneace.pl ||Express
  20 KB (3,050 words) - 21:01, 19 April 2017
• WormBase-Caltech Weekly Calls March 2012
  RNAi clone mappings
  7 KB (1,019 words) - 20:58, 12 April 2012
• WormBase-Caltech Weekly Calls January 2020
  * Clone example: https://wormbase.org/species/c_elegans/clone/W02C12#03--10
  7 KB (989 words) - 16:08, 5 February 2020
• WS217
  ...nterpolated_map_positions.WS217.gz - Interpolated map positions for each clone
  8 KB (915 words) - 11:10, 21 December 2011
• Transgenes
  ...nstruct OA clone field: id: D1001 name: "D1001"remark: "C. elegans genomic clone not used in the final reference genome, submitted by The C. elegans Genome
  29 KB (4,575 words) - 16:23, 3 March 2022
• Administration:Installing WormMine
  # git clone https://github.com/WormBase/website-intermine.git git clone https://github.com/WormBase/website-intermine.git
  25 KB (3,652 words) - 23:06, 25 December 2014
• WS244 Models.wrm
  1) ?Clone - extension to incorporate the AddGene data 3) ?RNAi - connection to ?Clone
  235 KB (23,325 words) - 10:33, 3 July 2014
• GBrowse Administration
  Algorithm::Munkres Array::Compare Clone Convert::Binary::C Error Graph GraphViz HTML::Entities HTML::HeadParser HT $ git clone git@github.com/WormBase/website.git
  20 KB (2,916 words) - 15:25, 4 August 2016
• Migration
  -rwxrwxr-x 1 todd wormbase 11644 Jul 6 14:06 clone
  16 KB (1,576 words) - 17:44, 16 August 2010
• WormBase-Caltech Weekly Calls May 2017
  * How readily can we clone existing forms (e.g. Phenotype form) for micropublications?
  8 KB (1,229 words) - 15:31, 1 June 2017
• First-pass data types explained
  ...structure correction''' - need to make sure Sanger is responsible for the clone [http://tazendra.caltech.edu/~postgres/cgi-bin/curation_status.cgi?action=f ...structure correction''' - need to make sure StLouis is responsible for the clone [http://tazendra.caltech.edu/~postgres/cgi-bin/curation_status.cgi?action=f
  21 KB (3,156 words) - 23:03, 13 August 2010
• UserGuide:Revised Nomenclature
  ...ing objects on the clone. For example 'AC3.3' is the third CDS made on the clone 'AC3'.</p><p>EST and mRNA evidence is then used to extend the CDS structure ...also have a Sequence Name, which is derived from the cosmid, fosmid or YAC clone on which they reside, for instance <em>F38H4.7</em>, indicating it is on th
  56 KB (9,514 words) - 09:48, 23 October 2015
• UserGuide:Reivsed Nomenclature
  ...ing objects on the clone. For example 'AC3.3' is the third CDS made on the clone 'AC3'.</p><p>EST and mRNA evidence is then used to extend the CDS structure ...also have a Sequence Name, which is derived from the cosmid, fosmid or YAC clone on which they reside, for instance <em>F38H4.7</em>, indicating it is on th
  56 KB (9,520 words) - 11:51, 21 October 2015
• GFF3specProposal
  to 5' and 3' EST reads from the same cDNA clone. The following GFF3
  13 KB (1,951 words) - 23:14, 13 August 2010
• Journal first-pass (jfp) postgres table details
  ...1970667..12012891, ZK1067:13703..22295, MtDNA:4504..5613), or cDNA/EST/OST clone names (e.g. AF071375, yk275g9, OSTR215B4_1). Otherwise, please give us the
  16 KB (2,310 words) - 11:05, 21 December 2011
• WormBase-Caltech Weekly Calls 2022
  Should Alliance gene & allele model have Clone/Sequence name as an attribute?
  10 KB (1,547 words) - 21:31, 2 January 2024
• Jfp postgres table details
  ...1970667..12012891, ZK1067:13703..22295, MtDNA:4504..5613), or cDNA/EST/OST clone names (e.g. AF071375, yk275g9, OSTR215B4_1). Otherwise, please give us the
  13 KB (1,960 words) - 11:07, 21 December 2011
• Linking script pipeline
  The entity lists '''Cell''', '''Clone''', '''Rearrangement''', '''Strain''', '''Transgene''', and '''Variation'''
  14 KB (2,324 words) - 19:51, 9 January 2015
• Co-op Documentation
  $ git clone git@github.com:WormBase/website.git
  11 KB (1,786 words) - 14:31, 17 May 2016
• Administration:Installing WormBase
  $ git clone git@github.com:WormBase/website.git todd> hg clone ssh://hg@bitbucket.org/tharris/wormbase-admin/ // Assuming you have alread
  26 KB (3,522 words) - 19:10, 18 June 2014
• Expression Pattern
  Clone ?Clone XREF Expr_pattern Clone
  104 KB (15,303 words) - 19:39, 11 May 2023
• WormBase-Caltech Weekly Calls 2023
  Positive_clone ?Clone XREF Positive_variation #Evidence Clone ?Clone XREF In_strain
  36 KB (4,994 words) - 17:27, 14 February 2024
• RNAi/archive
  ...PCR to confirm that they work properly), genomic coordinates, cDNA/EST/OST clone (note that many of these clones may be problematic; in such a case it is be ...ene names to identify the target gene. By providing the actual sequence or clone used in the experiment, we can ensure that the appropriate gene is identifi
  47 KB (7,989 words) - 23:40, 1 September 2015
• GSA Markup SOP
  *Intraspecies issue: In WB some clone names and strain names are identical. This problem has not been able to be
  17 KB (2,790 words) - 20:50, 10 January 2017
• WS226
  * ?Clone
  21 KB (2,346 words) - 11:15, 21 December 2011
• Software Life Cycle: 1. Updating The Development Server
  tharris> git clone git@github.com:WormBase/website-admin.git
  25 KB (3,632 words) - 03:11, 28 October 2013
• FP curator comments for St.Louis and Sanger structure correction data type
  | 5054||RW clone. t13c5.1 is alternatively spliced ||25/2/02 14:56 ...position: III:-14.02). In fact, both by sequence analysis of yk423e6 cDNA clone and by RT-PCR analysis (data not shown), we have not been able to detect in
  40 KB (4,083 words) - 23:02, 13 August 2010
• WS215
  ...nterpolated_map_positions.WS215.gz - Interpolated map positions for each clone
  19 KB (1,735 words) - 11:07, 21 December 2011
• Tasks in Progress
  ****Change Predicted CDSs and Clone to data tables
  29 KB (4,254 words) - 20:25, 27 April 2012
• Searching WormBase for Information About C. elegans (Wiley)
  ...m, 1998), and "number" denotes an otherwise anonymous gene embedded in the clone). ...s designed to archive and correlate classical genetic maps of chromosomes, clone maps (primarily of cosmids, but also of YACs, phage clones, and cDNAs), and
  103 KB (16,375 words) - 23:39, 30 November 2010
• COMMENTARY
  ...s designed to archive and correlate classical genetic maps of chromosomes, clone maps (primarily of cosmids, but also of YACs, phage clones, and cDNAs), and
  30 KB (4,765 words) - 20:03, 11 August 2010