WebDev 2009.07.29-Agenda and Minutes

Agenda

2. Administration update (Todd; 5 minutes)

• Restructured topology of production
• Big Iron failure yesterday, work-arounds in place
• Working with PvB to create list of services and hardware; TH putting production migration plan in place

3. Development update Matrix (Norie; 10 minutes)

• Gff2 -> GFF3 pipeline

• Test with Pristionchus pacificus
• WS204
  • PMap is built
  • GMap is built

• TH: Atomic level checks: how to test that something is successful?
• TH: Clone for every release, so that we have a checklist for each release, at a glance progress of build
• TH: Link to spreadsheet from the release notes on the wiki,

4. modENCODE update (Peter, Zheng; 10 minutes)

Peter:

• New data; released some Waterston tracks - 17 submissions
• Tiling array data.

• Expression data: C. elegans grown in presence of pathogens
• GBrowse updates
  • For each track in details, red rectangles with question mark; hover shows citations
    • Citation is truncated

• DataSource module in GB2.
  • Extract information from data sources

Zheng:

• WormMart
  • GO error when generating meta tables for BioMart: corrected
  • Web Interface
    • Martview: builds interface
    • One sheet of filters and attributes
    • Current Mart interface has many attributes omitted

Todo: Transform interface

TH: Going forward, how is the build process?

• ZZ: Requires some attention; will do with WS204 and report required time*