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- Archived Interaction documentation may be found [[Gene_Interaction/archive | here]] ==Interaction Curation==53 KB (6,521 words) - 20:51, 7 March 2019
- This class holds 3 types of interaction data: 1) ''Genetic Interaction''1 KB (143 words) - 21:51, 11 August 2010
- // ?Interaction class for Andrei WBInteraction00000001 // Replaces the old interaction model. The main enhancements are information about the interactors and the12 KB (1,431 words) - 19:06, 20 March 2012
- =Interaction Curation= ===upload Gary and Chris RNAi-based interaction objects into OA===50 KB (5,228 words) - 15:10, 21 July 2017
- ...Gunsalus' group at NYU. This tool is used by Wormbase to display Wormbase interaction data. ...er at this time and is installed manually. After it is installed, Wormbase interaction data needs to be dumped from AceDB and loaded to MySQL. Finally, the data i7 KB (1,133 words) - 17:52, 16 August 2010
- ...jects in Wormbase: Interaction and YH. Interaction class holds a number of interaction types (regulation, predicted, etc.). Objects in the YH class are of Y2H and ...isplay in the gene page aims to provide a consolidated compact view of the interaction objects in Wormbase. It replaces the previous views.2 KB (328 words) - 23:39, 13 August 2010
Page text matches
- ====i) ?Interaction and #Interactor_info==== ====?Interaction====321 bytes (39 words) - 13:06, 17 August 2012
- ...see 3 model change, 2 effecting the ?Variation Class and on effecting the ?Interaction class === ?Interaction ===2 KB (198 words) - 15:32, 19 September 2013
- This class holds 3 types of interaction data: 1) ''Genetic Interaction''1 KB (143 words) - 21:51, 11 August 2010
- = Agenda and Notes - BioGRID and WB interaction meeting.= ;item 1 - Mapping of Physical interaction terms/types between WB and BioGRID.1 KB (240 words) - 22:36, 22 February 2011
- ;item 1 - Interaction Display ;item 1 - Interaction Display1 KB (219 words) - 22:52, 12 January 2011
- ...jects in Wormbase: Interaction and YH. Interaction class holds a number of interaction types (regulation, predicted, etc.). Objects in the YH class are of Y2H and ...isplay in the gene page aims to provide a consolidated compact view of the interaction objects in Wormbase. It replaces the previous views.2 KB (328 words) - 23:39, 13 August 2010
- === ?Interaction model (Chris) === === ?Interaction, ?Expr_pattern, ?Antibody, ?WBProcess, and ?Construct (Chris) ===1 KB (198 words) - 17:01, 16 April 2015
- '''This cycle we see an extensive reworking of the Interaction class to allow for the better capture of Genetic interactions''' There are now 3 modules that detail the annotation of the genetic interaction.758 bytes (122 words) - 12:23, 26 July 2017
- // ?Interaction Interaction ?Interaction XREF WBProcess #Evidence2 KB (207 words) - 14:11, 4 March 2011
- ;item 2 - GO terms on interaction display109 bytes (14 words) - 22:55, 12 January 2011
- *Complicated change as needs interaction adding in lots of classes. Interaction ?Interaction3 KB (475 words) - 14:53, 19 February 2013
- [https://bitbucket.org/xdwang/ggi_oa/wiki/Home gene gene interaction OA wiki]77 bytes (13 words) - 22:51, 17 December 2010
- :: Remove interaction based phenotypes from existing tables-→ new table ;item 3 - Interaction Model (slides 4-5, attached .ppt in documents distributed section)3 KB (475 words) - 22:50, 17 December 2010
- ====='''?Interaction'''===== Interaction_phenotype ?Phenotype XREF Interaction //existing tag2 KB (260 words) - 11:11, 27 July 2012
- ...tion data]] - ''Wormbase N-Browse installation and preparation of Wormbase interaction data'' ...action Display in the Gene Page|Interaction display in the gene page]] - ''Interaction Display in the Gene Page''2 KB (293 words) - 22:32, 24 December 2010
- ==?Interaction==166 bytes (25 words) - 15:02, 5 March 2011
- // ?Interaction Interaction ?Interaction XREF WBProcess #Evidence3 KB (275 words) - 01:07, 6 February 2014
- = Agenda - BioGRID and WB interaction meeting.= ;item 2 - Mapping of interaction terms between WB and BioGRID. (Attached Excel and PowerPoint)3 KB (391 words) - 22:13, 22 February 2011
- == ?Interaction == 1) IN (Chris) I'd like to add the following tags to the main ?Interaction model: -4 KB (641 words) - 15:23, 19 June 2012
- ...nteraction datasets since both genes are involved in large scale datasets. Interaction widget is the most time consuming widget, with the most problems, which cou973 bytes (144 words) - 18:13, 6 September 2012
- === ?Interaction model changes: === ?Interaction3 KB (337 words) - 16:15, 19 February 2015
- // ?Interaction class for Andrei WBInteraction00000001 // Replaces the old interaction model. The main enhancements are information about the interactors and the12 KB (1,431 words) - 19:06, 20 March 2012
- === ?Interaction ===2 KB (227 words) - 15:59, 5 September 2013
- |gene regulation||Gene regulation||grg_||Chris Grove||Interaction with Regulatory|||| ...al<br>Interaction with Genetic<br>Interaction with Predicted<br>Paper with Interaction||||4 KB (580 words) - 18:13, 6 October 2017
- ** API/Role/Interaction.pm *** Contains the API methods needed to return the interaction data in the format needed for the Cytoscape displays1 KB (162 words) - 15:21, 28 March 2013
- Interaction ?Interaction2 KB (200 words) - 08:23, 5 October 2010
- Interaction ?Interaction XREF Molecule_interactor // Chris WS244 Interaction ?Interaction XREF Molecule_interactor // Chris WS2446 KB (543 words) - 23:29, 15 March 2016
- - subj: Addition to interaction Model (4.20) Wei wei's interaction data (emails from paul and andrei)1 KB (196 words) - 18:50, 11 August 2010
- '''ALSO''', WBPaper00004301 has Interaction objects associated with it; these should be removed is now handling the interaction data, Xiaodong? Perhaps she can correct this in the .ace file.2 KB (248 words) - 22:57, 13 August 2010
- ?Interaction Interaction_phenotype ?Phenotype XREF Interaction //existing tag4 KB (503 words) - 08:30, 22 June 2012
- Interaction model change *Triage by cases that come up for interaction or gene regulation events4 KB (695 words) - 15:26, 7 June 2012
- PPI (Protein-Protein Interaction) * Need type of interaction (physical AND proteinprotein), reference, and each gene listed4 KB (556 words) - 12:45, 21 May 2019
- * Interaction Working Group is talking about getting WormBase data into AGR * overlap between Gene Regulation / Interaction needs coordination2 KB (213 words) - 18:30, 1 February 2018
- KH - Some Caltech data seems to be missing from the WS233 upload (mostly Interaction data) KY - An interaction person will look into it.1 KB (228 words) - 16:54, 6 July 2012
- * Updates to classic interaction and interaction data compile1 KB (140 words) - 21:53, 16 February 2011
- * ?Interaction and #Interactor_info - Chris Grove ...hash and add an "Antibody_remark" field with a "?Text" entry to the main ?Interaction model.1 KB (202 words) - 12:30, 12 April 2012
- === New interaction Venn diagram tool === * Venn diagram shows how various interactors have multiple interaction types with a common focus gene4 KB (694 words) - 21:33, 19 December 2019
- '''Genetic interaction''' '''Physical interaction'''2 KB (315 words) - 03:38, 3 June 2015
- === Interaction-Gene associations === * Variations should be pushed from #Interactor_info into Interactor tag of ?Interaction model4 KB (633 words) - 19:09, 6 January 2015
- ...bsite/issues/6869 Interaction external link outs to BioGRID not working on interaction pages]2 KB (263 words) - 15:49, 4 April 2019
- ...t phenotype (IMP), Inferred from direct assay (IDA), Inferred from genetic interaction (IGI), etc. Clicking on the evidence code links to the Gene ontology consor * IGI=Inferred from Genetic Interaction3 KB (502 words) - 18:28, 17 August 2010
- ?Interaction700 bytes (98 words) - 09:44, 4 October 2010
- Physical Interaction model *Separating out from general "Interaction" model4 KB (650 words) - 17:08, 1 September 2011
- **?Interaction model "Rearrangement" tag needs an XREF and ?Rearrangement model needs an " New Interaction OA6 KB (983 words) - 18:02, 12 July 2012
- ===?Interaction and ?Feature models=== '''?Interaction model:'''7 KB (881 words) - 15:46, 21 November 2013
- Additional level of data capture within the Interaction model for Physical Interactions. ?Interaction2 KB (324 words) - 17:41, 2 June 2016
- Interaction ?Interaction3 KB (312 words) - 15:14, 15 July 2010
- * interaction network not working [https://github.com/WormBase/website/issues/8429 [#8429864 bytes (136 words) - 15:41, 21 October 2021
- Interaction dumping script *Issues of mapping interaction types: WB -> BioGRID vs. BioGRID -> WB8 KB (1,282 words) - 17:08, 7 July 2011
- ...s specific for single mutants and not phenotypes dues to interactions (see interaction phenotypes section below). ===Interaction phenotypes===7 KB (1,148 words) - 23:02, 23 October 2014
