Difference between revisions of "AceOjbect Redesign Page"
From WormBaseWiki
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! Comment/Brief Description | ! Comment/Brief Description | ||
| Link | | Link | ||
+ | | Replaces | ||
|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
| 1 | | 1 | ||
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|No distinct API needed at this time; partner class of Gene and possibly Variation, Rearrangement, Locus | |No distinct API needed at this time; partner class of Gene and possibly Variation, Rearrangement, Locus | ||
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|No distinct API needed at this time; accessed through XREFed classes. | |No distinct API needed at this time; accessed through XREFed classes. | ||
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|No distinct API needed at this time; support class for Anatomy_term. | |No distinct API needed at this time; support class for Anatomy_term. | ||
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|No distinct API needed at this time. | |No distinct API needed at this time. | ||
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|Person class takes precendence. | |Person class takes precendence. | ||
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|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
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|No distinct API necessary at this time | |No distinct API necessary at this time | ||
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|No distinct API necessary at this time; support class of Gene and Sequence; accessed through XREFed classes. | |No distinct API necessary at this time; support class of Gene and Sequence; accessed through XREFed classes. | ||
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|No distinct API needed at this time; accessed from XREFed classes. | |No distinct API needed at this time; accessed from XREFed classes. | ||
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|No distinct API needed at this time; accessed from XREFed classes. | |No distinct API needed at this time; accessed from XREFed classes. | ||
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| will schedule a content/UI call soon | | will schedule a content/UI call soon | ||
| http://beta.wormbase.org/reports/gene/WBGene00006763 | | http://beta.wormbase.org/reports/gene/WBGene00006763 | ||
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| 27 | | 27 | ||
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|No distinct API needed at this time; support class for Gene. | |No distinct API needed at this time; support class for Gene. | ||
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|No distinct API necessary at this time. | |No distinct API necessary at this time. | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
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|No API necessary at this time; accessed from XREFed classes. | |No API necessary at this time; accessed from XREFed classes. | ||
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| Norie | | Norie | ||
| ? | | ? | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|- bgcolor="#D7D7D7" | |- bgcolor="#D7D7D7" | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
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|No distinct API necessary at this time. | |No distinct API necessary at this time. | ||
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| [[WormBase Model:Library|Library]] | | [[WormBase Model:Library|Library]] | ||
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| [[WormBase Model:Locus|Locus]] | | [[WormBase Model:Locus|Locus]] | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|No distinct API needed at this time. | |No distinct API needed at this time. | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
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|No API necessary at this time; I don't think this class even exists. | |No API necessary at this time; I don't think this class even exists. | ||
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| Norie | | Norie | ||
| ? | | ? | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
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|No API necessary; AceDB internals/accessed from XREFed classes. | |No API necessary; AceDB internals/accessed from XREFed classes. | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
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|No API necessary at this time; accessed from XREFed classes. | |No API necessary at this time; accessed from XREFed classes. | ||
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| [[WormBase Model:Neurodata|Neurodata]] | | [[WormBase Model:Neurodata|Neurodata]] | ||
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| [[WormBase Model:Neuro_location|Neuro_location]] | | [[WormBase Model:Neuro_location|Neuro_location]] | ||
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|No distinct API necessary at this time; accessed through XREFed classes like PCR_product. | |No distinct API necessary at this time; accessed through XREFed classes like PCR_product. | ||
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|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
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|No distinct API necessary at this time; accessed through XREFed classes. | |No distinct API necessary at this time; accessed through XREFed classes. | ||
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| ? | | ? | ||
| http://beta.wormbase.org/reports/paper/WBPaper00015392 | | http://beta.wormbase.org/reports/paper/WBPaper00015392 | ||
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| 71 | | 71 | ||
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| Norie | | Norie | ||
| ? | | ? | ||
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|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
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|No API needed at this time; support class for searching the Person class. | |No API needed at this time; support class for searching the Person class. | ||
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| will schedule a call soon | | will schedule a call soon | ||
| http://beta.wormbase.org/reports/phenotype/WBPhenotype:0000039 | | http://beta.wormbase.org/reports/phenotype/WBPhenotype:0000039 | ||
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|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
| 75 | | 75 | ||
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|No distinct API necessary at this time; support class of Phenotype; accessed through XREFed classes. | |No distinct API necessary at this time; support class of Phenotype; accessed through XREFed classes. | ||
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|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
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|No API needed at this time; support class for searching Phenotype. | |No API needed at this time; support class for searching Phenotype. | ||
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|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
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|No API needed; AceDB internals. | |No API needed; AceDB internals. | ||
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|No distinct API needed at this time; accessed through XREFed classes. | |No distinct API needed at this time; accessed through XREFed classes. | ||
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| Content/UI call done on 07/08/10, rather simple model should be finish soon. | | Content/UI call done on 07/08/10, rather simple model should be finish soon. | ||
| http://beta.wormbase.org/reports/protein/WP:CE28239 | | http://beta.wormbase.org/reports/protein/WP:CE28239 | ||
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| 81 | | 81 | ||
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|No distinct API needed at this time. | |No distinct API needed at this time. | ||
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|No distinct API necessary at this time; this seems to be a helper class of Paper anyways. | |No distinct API necessary at this time; this seems to be a helper class of Paper anyways. | ||
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| Content/UI call on 07/10/10, lots of feedback | | Content/UI call on 07/10/10, lots of feedback | ||
| http://beta.wormbase.org/reports/sequence/JC8.10a | | http://beta.wormbase.org/reports/sequence/JC8.10a | ||
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| 90 | | 90 | ||
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|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
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| Norie | | Norie | ||
| ? | | ? | ||
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|No distinct API needed at this time; support class of Gene and Sequence; accessed through XREFed classes. | |No distinct API needed at this time; support class of Gene and Sequence; accessed through XREFed classes. | ||
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| 98 | | 98 | ||
| [[WormBase Model:Transposon|Transposon]] | | [[WormBase Model:Transposon|Transposon]] | ||
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|No distinct API necessary at this time; support class of Transposon & variation; accessed through XREFed classes. | |No distinct API necessary at this time; support class of Transposon & variation; accessed through XREFed classes. | ||
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| content/UI call finish on 06/25/10, will schedule another follow up call | | content/UI call finish on 06/25/10, will schedule another follow up call | ||
| http://beta.wormbase.org/reports/variation/WBVar00182432 | | http://beta.wormbase.org/reports/variation/WBVar00182432 | ||
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|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
| 101 | | 101 | ||
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|No API necessary at this time; support class for Variation. | |No API necessary at this time; support class for Variation. | ||
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|- | |- |
Revision as of 22:21, 14 July 2010
The A - Z of Ace Model and Redesign Page
No. | Name | API | Template | People | Comment/Brief Description | Link | Replaces | |
---|---|---|---|---|---|---|---|---|
1 | 2_point_data | No distinct API needed at this time; partner class of Gene and possibly Variation, Rearrangement, Locus | ||||||
2 | 3d_data | |||||||
3 | Accession_number | No distinct API needed at this time; accessed through XREFed classes. | ||||||
4 | Analysis | |||||||
5 | Anatomy_function | |||||||
6 | Anatomy_name | No distinct API needed at this time; support class for Anatomy_term. | ||||||
7 | Anatomy_term | |||||||
8 | Antibody | |||||||
9 | AO_code | |||||||
10 | Atlas | No distinct API needed at this time. | ||||||
11 | Author | Person class takes precendence. | ||||||
12 | Balancer | No distinct API necessary at this time | ||||||
13 | CDS | No distinct API necessary at this time; support class of Gene and Sequence; accessed through XREFed classes. | ||||||
14 | Cell | |||||||
15 | Cell_group | |||||||
16 | Clone | |||||||
17 | Condition | |||||||
18 | Contig | |||||||
19 | Database | No distinct API needed at this time; accessed from XREFed classes. | ||||||
20 | Database_field | No distinct API needed at this time; accessed from XREFed classes. | ||||||
21 | Expression_cluster | |||||||
22 | Expr_pattern | |||||||
23 | Expr_profile | |||||||
24 | Feature | |||||||
25 | Feature_data | |||||||
26 | Gene | mostly done | in the progress | Norie and Abby | will schedule a content/UI call soon | http://beta.wormbase.org/reports/gene/WBGene00006763 | ||
27 | Gene_class | |||||||
28 | Gene_cluster | |||||||
29 | Gene_name | No distinct API needed at this time; support class for Gene. | ||||||
30 | Gene_regulation | |||||||
31 | Genetic_code | No distinct API necessary at this time. | ||||||
32 | GO_code | |||||||
33 | GO_term | |||||||
34 | Grid | No API necessary; AceDB internals. | ||||||
35 | Grid_data | No API necessary; AceDB internals. | ||||||
36 | Grid_row | No API necessary; AceDB internals. | ||||||
37 | Homol_data | No API necessary at this time; accessed from XREFed classes. | ||||||
38 | Homology_group | |||||||
39 | Interaction | 80%? | ? | Norie | ? | |||
40 | Interval_col_conf | No API necessary; AceDB internals. | ||||||
41 | Jade | No API necessary; AceDB internals. | ||||||
42 | Lab_Location | No distinct API necessary at this time. | ||||||
43 | Laboratory | |||||||
44 | Library | |||||||
45 | Life_stage | |||||||
46 | Locus | |||||||
47 | ManyMap | No API necessary; AceDB internals. | ||||||
48 | Map | No API necessary; AceDB internals. | ||||||
49 | Map_error | No API necessary; AceDB internals. | ||||||
50 | Map_offset | No API necessary; AceDB internals. | ||||||
51 | Map_position | |||||||
52 | Mass_spec_experiment | |||||||
53 | Mass_spec_peptide | |||||||
54 | Method | No distinct API needed at this time. | ||||||
55 | Microarray | |||||||
56 | Microarray_experiment | |||||||
57 | Microarray_results | |||||||
58 | Mixed_grid_row | No API necessary; AceDB internals. | ||||||
59 | Molecule | No API necessary at this time; I don't think this class even exists. | ||||||
60 | Motif | 80%? | ? | Norie | ? | |||
61 | Movie | No API necessary; AceDB internals/accessed from XREFed classes. | ||||||
62 | Multi_counts | No API necessary; AceDB internals. | ||||||
63 | MultiMap | No API necessary; AceDB internals. | ||||||
64 | Multi_pt_data | No API necessary at this time; accessed from XREFed classes. | ||||||
65 | Neurodata | |||||||
66 | Neuro_location | |||||||
67 | Oligo | No distinct API necessary at this time; accessed through XREFed classes like PCR_product. | ||||||
68 | Oligo_set | No distinct API necessary at this time; accessed through XREFed classes. | ||||||
69 | Operon | |||||||
70 | Paper | 50% | 50% | Xiaoqi | ? | http://beta.wormbase.org/reports/paper/WBPaper00015392 | ||
71 | PCR_product | |||||||
72 | Person | 80%? | ? | Norie | ? | |||
73 | Person_name | No API needed at this time; support class for searching the Person class. | ||||||
74 | Phenotype | 85% | 85% | Xiaoqi | will schedule a call soon | http://beta.wormbase.org/reports/phenotype/WBPhenotype:0000039 | ||
75 | Phenotype_Assay | No distinct API necessary at this time; support class of Phenotype; accessed through XREFed classes. | ||||||
76 | Phenotype_name | No API needed at this time; support class for searching Phenotype. | ||||||
77 | Picture | No API needed; AceDB internals. | ||||||
78 | Position_Matrix | |||||||
79 | Pos_neg_data | No distinct API needed at this time; accessed through XREFed classes. | ||||||
80 | Protein | 90% | 90% | Xiaoqi | Content/UI call done on 07/08/10, rather simple model should be finish soon. | http://beta.wormbase.org/reports/protein/WP:CE28239 | ||
81 | Pseudogene | |||||||
82 | Rearrangement | |||||||
83 | ReconCellInfo | No distinct API needed at this time. | ||||||
84 | Reconstruction | |||||||
85 | Reference | No distinct API necessary at this time; this seems to be a helper class of Paper anyways. | ||||||
86 | RNAi | |||||||
87 | SAGE_experiment | |||||||
88 | SAGE_tag | |||||||
89 | Sequence | 80% | 80% | Xiaoqi | Content/UI call on 07/10/10, lots of feedback | http://beta.wormbase.org/reports/sequence/JC8.10a | ||
90 | SK_map | |||||||
91 | SO_term | No API necessary; AceDB internals. | ||||||
92 | Species | |||||||
93 | Strain | 80%? | ? | Norie | ? | |||
94 | Structure_data | |||||||
95 | Timepoint | |||||||
96 | Transcript | No distinct API needed at this time; support class of Gene and Sequence; accessed through XREFed classes. | ||||||
97 | Transgene | 80%? | ? | Norie | ? | |||
98 | Transposon | |||||||
99 | Transposon_family | No distinct API necessary at this time; support class of Transposon & variation; accessed through XREFed classes. | ||||||
100 | Variation | 85% | 85% | Todd | content/UI call finish on 06/25/10, will schedule another follow up call | http://beta.wormbase.org/reports/variation/WBVar00182432 | ||
101 | Variation_name | No API necessary at this time; support class for Variation. | ||||||
102 | YH |