WormBase Model:Condition

WormBase Models

Model

//////////////////////////////////
//
//?Condition class
//
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?Condition Life_stage      ?Life_stage //life stage of the worms
           Sex             UNIQUE Hermaphrodite
                                  Male
                                  Female        //not all worms are elegans!
                                  Unknown
           Food            Text
           Exposure_time   Text
           Strain          ?Strain // added for Microarry_result [030127 krb]
           Preparation     ?Text // added for Microarray_result [030127 krb]
           Temperature     Int //temperature of the experiment
           Genotype        ?Text //record genotype when strain name is not available. 
           Other           ?Text 
           Relationship    Contains        ?Condition XREF Contained_in  //The following tags are for samples with time sequence, for example, L1 sample precedes L2 samples, but not really used.  
                           Contained_in    ?Condition XREF Contains
                           Precedes        ?Condition XREF Follows
                           Follows         ?Condition XREF Precedes
           Reference       ?Paper  //Paper that defines the condition.
           Tissue          ?Anatomy_term   //for samples that are not whole worm but only a tissue part.
           Treatment       ?Text //treatment of the sample. 
           SAGE_experiment ?SAGE_experiment XREF Sample //refers to SAGE experiment
           Analysis        ?Analysis XREF Sample 
           Remark          ?Text #Evidence

Proposed Changes

Wen: It is strange that ?Condition XREF to SAGE experiment but not Microarray experiment. It is not consistent.

unused tags

Hermaphrodite

Male

Female

Exposure_time

Contains

Contained_in