Difference between revisions of "AceOjbect Redesign Page"

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| [[WormBase Model:Condition|Condition]]
 
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| [[WormBase Model:Contig|Contig]]
 
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| [[WormBase Model:Database|Database]]
 
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| [[WormBase Model:Database_field|Database_field]]
 
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| [[WormBase Model:Expression_cluster|Expression_cluster]]
 
| [[WormBase Model:Expression_cluster|Expression_cluster]]
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| [[WormBase Model:Expr_pattern|Expr_pattern]]
 
| [[WormBase Model:Expr_pattern|Expr_pattern]]
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| [[WormBase Model:Expr_profile|Expr_profile]]
 
| [[WormBase Model:Expr_profile|Expr_profile]]
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| [[WormBase Model:Feature|Feature]]
 
| [[WormBase Model:Feature|Feature]]
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| [[User:Pdavis|Paul Davis]] Mary Anne
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| [[WormBase Model:Feature_data|Feature_data]]
 
| [[WormBase Model:Feature_data|Feature_data]]
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| ?Class of data used to mark up features on Transcript data
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| [[WormBase Model:Gene|Gene]]
 
| [[WormBase Model:Gene|Gene]]
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| Envelope for collecting/connecting data pertaining to a single gene
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| [[WormBase Model:Gene_class|Gene_class]]
 
| [[WormBase Model:Gene_class|Gene_class]]
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| Used for describing and grouping a family of genes
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| Mary Ann
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| [[WormBase Model:Gene_cluster|Gene_cluster]]
 
| [[WormBase Model:Gene_cluster|Gene_cluster]]
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| Used to denote a cluster of genes of a specific type - not maintained?
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| [[WormBase Model:Gene_name|Gene_name]]
 
| [[WormBase Model:Gene_name|Gene_name]]
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| [[WormBase Model:Gene_regulation|Gene_regulation]]
 
| [[WormBase Model:Gene_regulation|Gene_regulation]]
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| Caltech
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| 31
 
| 31
 
| [[WormBase Model:Genetic_code|Genetic_code]]
 
| [[WormBase Model:Genetic_code|Genetic_code]]
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| Sanger
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|  
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| Allows for alternate genetic codes for Mitocondria and selenocysteine.
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| 32
 
| 32
 
| [[WormBase Model:GO_code|GO_code]]
 
| [[WormBase Model:GO_code|GO_code]]
−
| Caltech
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|  
−
| ?
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|  
 
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|
 
|-
 
|-
 
| 33
 
| 33
 
| [[WormBase Model:GO_term|GO_term]]
 
| [[WormBase Model:GO_term|GO_term]]
−
| Caltech
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|  
−
| ?
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|  
 
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|
 
|-
 
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| 34
 
| 34
 
| [[WormBase Model:Grid|Grid]]
 
| [[WormBase Model:Grid|Grid]]
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| Sanger
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|  
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| 35
 
| 35
 
| [[WormBase Model:Grid_data|Grid_data]]
 
| [[WormBase Model:Grid_data|Grid_data]]
−
| Sanger
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|  
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| ?
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|  
 
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|-
 
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| 36
 
| 36
 
| [[WormBase Model:Grid_row|Grid_row]]
 
| [[WormBase Model:Grid_row|Grid_row]]
−
| Sanger
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|  
−
| ?
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|  
 
|
 
|
 
|-
 
|-
 
| 37
 
| 37
 
| [[WormBase Model:Homol_data|Homol_data]]
 
| [[WormBase Model:Homol_data|Homol_data]]
−
| Sanger
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|  
−
| Used for storing alignment data
+
|
 
|
 
|
 
|-
 
|-
 
| 38
 
| 38
 
| [[WormBase Model:Homology_group|Homology_group]]
 
| [[WormBase Model:Homology_group|Homology_group]]
−
| Caltech
+
|  
−
| ?
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|  
 
|
 
|
 
|-
 
|-
 
| 39
 
| 39
 
| [[WormBase Model:Interaction|Interaction]]
 
| [[WormBase Model:Interaction|Interaction]]
−
| Caltech
+
|  
−
| ?
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|  
 
|
 
|
 
|-
 
|-
 
| 40
 
| 40
 
| [[WormBase Model:Interval_col_conf|Interval_col_conf]]
 
| [[WormBase Model:Interval_col_conf|Interval_col_conf]]
−
| ?
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 41
 
| 41
 
| [[WormBase Model:Jade|Jade]]
 
| [[WormBase Model:Jade|Jade]]
−
| Acedb?
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 42
 
| 42
 
| [[WormBase Model:Lab_Location|Lab_Location]]
 
| [[WormBase Model:Lab_Location|Lab_Location]]
−
| Caltech
+
|
−
| ?
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|  
 
|
 
|
 
|-
 
|-
 
| 43
 
| 43
 
| [[WormBase Model:Laboratory|Laboratory]]
 
| [[WormBase Model:Laboratory|Laboratory]]
−
| Caltech
+
|  
−
| ?
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|  
 
|
 
|
 
|-
 
|-
 
| 44
 
| 44
 
| [[WormBase Model:Library|Library]]
 
| [[WormBase Model:Library|Library]]
−
| Sanger
+
|  
−
| libraries used for sequencing of nematode ESTs // Information to come from Mark Blaxters
+
|
 
|
 
|
 
|-
 
|-
 
| 45
 
| 45
 
| [[WormBase Model:Life_stage|Life_stage]]
 
| [[WormBase Model:Life_stage|Life_stage]]
−
| Caltech
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 46
 
| 46
 
| [[WormBase Model:Locus|Locus]]
 
| [[WormBase Model:Locus|Locus]]
−
| Sanger
+
|  
−
| This class is a reminent that should be cleaned up.
+
|
 
|
 
|
 
|-
 
|-
 
| 47
 
| 47
 
| [[WormBase Model:ManyMap|ManyMap]]
 
| [[WormBase Model:ManyMap|ManyMap]]
−
| Sanger
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 48
 
| 48
 
| [[WormBase Model:Map|Map]]
 
| [[WormBase Model:Map|Map]]
−
| Sanger
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 49
 
| 49
 
| [[WormBase Model:Map_error|Map_error]]
 
| [[WormBase Model:Map_error|Map_error]]
−
| Sanger
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 50
 
| 50
 
| [[WormBase Model:Map_offset|Map_offset]]
 
| [[WormBase Model:Map_offset|Map_offset]]
−
| Sanger
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 51
 
| 51
 
| [[WormBase Model:Map_position|Map_position]]
 
| [[WormBase Model:Map_position|Map_position]]
−
| Sanger
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 52
 
| 52
 
| [[WormBase Model:Mass_spec_experiment|Mass_spec_experiment]]
 
| [[WormBase Model:Mass_spec_experiment|Mass_spec_experiment]]
−
| Sanger
+
|  
−
| ?
+
|  
−
| Gary Williams
+
|  
 
|-
 
|-
 
| 53
 
| 53
 
| [[WormBase Model:Mass_spec_peptide|Mass_spec_peptide]]
 
| [[WormBase Model:Mass_spec_peptide|Mass_spec_peptide]]
−
| Sanger
+
|  
−
| ?
+
|  
−
| Gary Williams
+
|  
 
|-
 
|-
 
| 54
 
| 54
 
| [[WormBase Model:Method|Method]]
 
| [[WormBase Model:Method|Method]]
−
| ?
+
|  
−
| AceDB class that details display etc. of objects in the other classes
+
|  
 
|
 
|
 
|-
 
|-
 
| 55
 
| 55
 
| [[WormBase Model:Microarray|Microarray]]
 
| [[WormBase Model:Microarray|Microarray]]
−
| Caltech
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 56
 
| 56
 
| [[WormBase Model:Microarray_experiment|Microarray_experiment]]
 
| [[WormBase Model:Microarray_experiment|Microarray_experiment]]
−
| Caltech
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 57
 
| 57
 
| [[WormBase Model:Microarray_results|Microarray_results]]
 
| [[WormBase Model:Microarray_results|Microarray_results]]
−
| Caltech
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 58
 
| 58
 
| [[WormBase Model:Mixed_grid_row|Mixed_grid_row]]
 
| [[WormBase Model:Mixed_grid_row|Mixed_grid_row]]
−
| Sanger
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 59
 
| 59
 
| [[WormBase Model:Molecule|Molecule]]
 
| [[WormBase Model:Molecule|Molecule]]
−
| Caltech
+
|  
−
| Used to capture molecules that influence gene activity and affect phenotypes.
+
|  
−
| [[User=kyook|Karen]]
+
|  
 
|-
 
|-
 
| 60
 
| 60
 
| [[WormBase Model:Motif|Motif]]
 
| [[WormBase Model:Motif|Motif]]
−
| Sanger
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 61
 
| 61
 
| [[WormBase Model:Movie|Movie]]
 
| [[WormBase Model:Movie|Movie]]
−
| Caltech
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 62
 
| 62
 
| [[WormBase Model:Multi_counts|Multi_counts]]
 
| [[WormBase Model:Multi_counts|Multi_counts]]
−
| Sanger?
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 63
 
| 63
 
| [[WormBase Model:MultiMap|MultiMap]]
 
| [[WormBase Model:MultiMap|MultiMap]]
−
| ?
+
|  
−
| Not used?
+
|  
 
|
 
|
 
|-
 
|-
 
| 64
 
| 64
 
| [[WormBase Model:Multi_pt_data|Multi_pt_data]]
 
| [[WormBase Model:Multi_pt_data|Multi_pt_data]]
−
| Sanger
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 65
 
| 65
 
| [[WormBase Model:Neurodata|Neurodata]]
 
| [[WormBase Model:Neurodata|Neurodata]]
−
| ?
+
|  
−
| ?Not Used
+
|
−
|[[User:raymond|Raymond]]
+
|
 
|-
 
|-
 
| 66
 
| 66
 
| [[WormBase Model:Neuro_location|Neuro_location]]
 
| [[WormBase Model:Neuro_location|Neuro_location]]
−
| ?
+
|  
−
| ? Not Used
+
|
−
|[[User:raymond|Raymond]]
+
|
 
|-
 
|-
 
| 67
 
| 67
 
| [[WormBase Model:Oligo|Oligo]]
 
| [[WormBase Model:Oligo|Oligo]]
−
| ?
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 68
 
| 68
 
| [[WormBase Model:Oligo_set|Oligo_set]]
 
| [[WormBase Model:Oligo_set|Oligo_set]]
−
| ?
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 69
 
| 69
 
| [[WormBase Model:Operon|Operon]]
 
| [[WormBase Model:Operon|Operon]]
−
| Sanger
+
|  
−
| Stores genes that are in Operons
+
|
−
| [[User:Pdavis|Paul Davis]]
+
|  
 
|-
 
|-
 
| 70
 
| 70
 
| [[WormBase Model:Paper|Paper]]
 
| [[WormBase Model:Paper|Paper]]
−
| Caltech
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 71
 
| 71
 
| [[WormBase Model:PCR_product|PCR_product]]
 
| [[WormBase Model:PCR_product|PCR_product]]
−
| ?
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 72
 
| 72
 
| [[WormBase Model:Person|Person]]
 
| [[WormBase Model:Person|Person]]
−
| Caltech
+
|  
−
| ?
+
|  
−
| Cecilia Nakamura
+
|
 
|-
 
|-
 
| 73
 
| 73
 
| [[WormBase Model:Person_name|Person_name]]
 
| [[WormBase Model:Person_name|Person_name]]
−
| Caltech
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 74
 
| 74
 
| [[WormBase Model:Phenotype|Phenotype]]
 
| [[WormBase Model:Phenotype|Phenotype]]
−
| Caltech
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 75
 
| 75
 
| [[WormBase Model:Phenotype_Assay|Phenotype_Assay]]
 
| [[WormBase Model:Phenotype_Assay|Phenotype_Assay]]
−
| Caltech
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 76
 
| 76
 
| [[WormBase Model:Phenotype_name|Phenotype_name]]
 
| [[WormBase Model:Phenotype_name|Phenotype_name]]
−
| Caltech
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 77
 
| 77
 
| [[WormBase Model:Picture|Picture]]
 
| [[WormBase Model:Picture|Picture]]
−
| Caltech
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 78
 
| 78
 
| [[WormBase Model:Position_Matrix|Position_Matrix]]
 
| [[WormBase Model:Position_Matrix|Position_Matrix]]
−
| Caltech
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 79
 
| 79
 
| [[WormBase Model:Pos_neg_data|Pos_neg_data]]
 
| [[WormBase Model:Pos_neg_data|Pos_neg_data]]
−
| Sanger
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 80
 
| 80
 
| [[WormBase Model:Protein|Protein]]
 
| [[WormBase Model:Protein|Protein]]
−
| Sanger
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 81
 
| 81
 
| [[WormBase Model:Pseudogene|Pseudogene]]
 
| [[WormBase Model:Pseudogene|Pseudogene]]
−
| Sanger
+
|  
−
| Stores the Pseudogene models
+
|
 
|
 
|
 
|-
 
|-
 
| 82
 
| 82
 
| [[WormBase Model:Rearrangement|Rearrangement]]
 
| [[WormBase Model:Rearrangement|Rearrangement]]
−
| Caltech
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 83
 
| 83
 
| [[WormBase Model:ReconCellInfo|ReconCellInfo]]
 
| [[WormBase Model:ReconCellInfo|ReconCellInfo]]
−
| OICR
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 84
 
| 84
 
| [[WormBase Model:Reconstruction|Reconstruction]]
 
| [[WormBase Model:Reconstruction|Reconstruction]]
−
| OICR
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 85
 
| 85
 
| [[WormBase Model:Reference|Reference]]
 
| [[WormBase Model:Reference|Reference]]
−
| Caltech
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 86
 
| 86
 
| [[WormBase Model:RNAi|RNAi]]
 
| [[WormBase Model:RNAi|RNAi]]
−
| Caltech
+
|  
−
| Stores information pertaining to RNAi experiments, including RNAi probe targets, resulting phenotypes, and associated papers.
+
|
−
| Gary Schindleman, [[User:Cgrove|Chris Grove]]
+
|  
 
|-
 
|-
 
| 87
 
| 87
 
| [[WormBase Model:SAGE_experiment|SAGE_experiment]]
 
| [[WormBase Model:SAGE_experiment|SAGE_experiment]]
−
| Sanger
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 88
 
| 88
 
| [[WormBase Model:SAGE_tag|SAGE_tag]]
 
| [[WormBase Model:SAGE_tag|SAGE_tag]]
−
| Sanger
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 89
 
| 89
 
| [[WormBase Model:Sequence|Sequence]]
 
| [[WormBase Model:Sequence|Sequence]]
−
| Sanger
+
|  
−
| A broad class for storing genomic, Transcripts Sequence etc.
+
|
 
|
 
|
 
|-
 
|-
 
| 90
 
| 90
 
| [[WormBase Model:SK_map|SK_map]]
 
| [[WormBase Model:SK_map|SK_map]]
−
| Caltech
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 91
 
| 91
 
| [[WormBase Model:SO_term|SO_term]]
 
| [[WormBase Model:SO_term|SO_term]]
−
| Caltech
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 92
 
| 92
 
| [[WormBase Model:Species|Species]]
 
| [[WormBase Model:Species|Species]]
−
| Sanger
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 93
 
| 93
 
| [[WormBase Model:Strain|Strain]]
 
| [[WormBase Model:Strain|Strain]]
−
| Sanger
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 94
 
| 94
 
| [[WormBase Model:Structure_data|Structure_data]]
 
| [[WormBase Model:Structure_data|Structure_data]]
−
| OICR
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 95
 
| 95
 
| [[WormBase Model:Timepoint|Timepoint]]
 
| [[WormBase Model:Timepoint|Timepoint]]
−
| OICR
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 96
 
| 96
 
| [[WormBase Model:Transcript|Transcript]]
 
| [[WormBase Model:Transcript|Transcript]]
−
| Sanger
+
|  
−
| Stores RNAgenes and the Full length Coding_transcripts
+
|
 
|
 
|
 
|-
 
|-
 
| 97
 
| 97
 
| [[WormBase Model:Transgene|Transgene]]
 
| [[WormBase Model:Transgene|Transgene]]
−
| Caltech
+
|  
−
| ?
+
|  
 
|  
 
|  
 
|-
 
|-
 
| 98
 
| 98
 
| [[WormBase Model:Transposon|Transposon]]
 
| [[WormBase Model:Transposon|Transposon]]
−
| Sanger
+
|  
−
| Stores the Transposon span and S_child info
+
|
−
| [[User:Pdavis|Paul Davis]]
+
|  
 
|-
 
|-
 
| 99
 
| 99
 
| [[WormBase Model:Transposon_family|Transposon_family]]
 
| [[WormBase Model:Transposon_family|Transposon_family]]
−
| Sanger
+
|  
−
| Used for grouping like ?Transposons
+
|
−
| [[User:Pdavis|Paul Davis]]
+
|  
 
|-
 
|-
 
| 100
 
| 100
 
| [[WormBase Model:Variation|Variation]]
 
| [[WormBase Model:Variation|Variation]]
−
| Sanger
+
|  
−
| ?
+
|  
−
| Mary Ann
+
|
 
|-
 
|-
 
| 101
 
| 101
 
| [[WormBase Model:Variation_name|Variation_name]]
 
| [[WormBase Model:Variation_name|Variation_name]]
−
| Sanger
+
|  
−
| ?
+
|  
 
|
 
|
 
|-
 
|-
 
| 102
 
| 102
 
| [[WormBase Model:YH|YH]]
 
| [[WormBase Model:YH|YH]]
−
| Caltech
+
|  
−
| ?
+
|  
 
|
 
|
 
|}
 
|}

Revision as of 15:10, 14 July 2010

The A - Z of Ace Model and Redesign Page

No. Name API Template People Comment/Brief Description
1 2_point_data
2 3d_data
3 Accession_number
4 Analysis
5 Anatomy_function
6 Anatomy_name
7 Anatomy_term
8 Antibody
9 AO_code
10 Atlas
11 Author
12 Balancer
13 CDS
14 Cell
15 Cell_group
16 Clone
17 Condition
18 Contig
19 Database
20 Database_field
21 Expression_cluster
22 Expr_pattern
23 Expr_profile
24 Feature
25 Feature_data
26 Gene
27 Gene_class
28 Gene_cluster
29 Gene_name
30 Gene_regulation
31 Genetic_code
32 GO_code
33 GO_term
34 Grid
35 Grid_data
36 Grid_row
37 Homol_data
38 Homology_group
39 Interaction
40 Interval_col_conf
41 Jade
42 Lab_Location
43 Laboratory
44 Library
45 Life_stage
46 Locus
47 ManyMap
48 Map
49 Map_error
50 Map_offset
51 Map_position
52 Mass_spec_experiment
53 Mass_spec_peptide
54 Method
55 Microarray
56 Microarray_experiment
57 Microarray_results
58 Mixed_grid_row
59 Molecule
60 Motif
61 Movie
62 Multi_counts
63 MultiMap
64 Multi_pt_data
65 Neurodata
66 Neuro_location
67 Oligo
68 Oligo_set
69 Operon
70 Paper
71 PCR_product
72 Person
73 Person_name
74 Phenotype
75 Phenotype_Assay
76 Phenotype_name
77 Picture
78 Position_Matrix
79 Pos_neg_data
80 Protein
81 Pseudogene
82 Rearrangement
83 ReconCellInfo
84 Reconstruction
85 Reference
86 RNAi
87 SAGE_experiment
88 SAGE_tag
89 Sequence
90 SK_map
91 SO_term
92 Species
93 Strain
94 Structure_data
95 Timepoint
96 Transcript
97 Transgene
98 Transposon
99 Transposon_family
100 Variation
101 Variation_name
102 YH
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