Difference between revisions of "AceOjbect Redesign Page"

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|[[WormBase Model:2_point_data|2_point_data]]
 
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| [[WormBase Model:3d_data|3d_data]]
 
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|[[WormBase Model:Accession_number|Accession_number]]
 
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| [[WormBase Model:Analysis|Analysis]]
 
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| [[WormBase Model:Anatomy_function|Anatomy_function]]
 
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| [[WormBase Model:Anatomy_name|Anatomy_name]]
 
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| [[WormBase Model:Author|Author]]
 
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| [[WormBase Model:CDS|CDS]]
 
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| [[WormBase Model:Cell|Cell]]
 
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| [[WormBase Model:Cell_group|Cell_group]]
 
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| [[WormBase Model:Clone|Clone]]
 
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Revision as of 15:06, 14 July 2010

The A - Z of Ace Model and Redesign Page

No. Name API Template People Comment/Brief Description
1 2_point_data
2 3d_data
3 Accession_number
4 Analysis
5 Anatomy_function
6 Anatomy_name
7 Anatomy_term
8 Antibody
9 AO_code
10 Atlas
11 Author
12 Balancer
13 CDS
14 Cell
15 Cell_group
16 Clone
17 Condition ? ?
18 Contig Sanger ?
19 Database Sanger ?
20 Database_field Sanger ?
21 Expression_cluster Caltech ?
22 Expr_pattern Caltech ?
23 Expr_profile Caltech ?
24 Feature Sanger ? Paul Davis Mary Anne
25 Feature_data Sanger ?Class of data used to mark up features on Transcript data
26 Gene Sanger Envelope for collecting/connecting data pertaining to a single gene Mary Ann
27 Gene_class Sanger Used for describing and grouping a family of genes Mary Ann
28 Gene_cluster Sanger Used to denote a cluster of genes of a specific type - not maintained?
29 Gene_name Sanger ?
30 Gene_regulation Caltech ?
31 Genetic_code Sanger Allows for alternate genetic codes for Mitocondria and selenocysteine.
32 GO_code Caltech ?
33 GO_term Caltech ?
34 Grid Sanger ?
35 Grid_data Sanger ?
36 Grid_row Sanger ?
37 Homol_data Sanger Used for storing alignment data
38 Homology_group Caltech ?
39 Interaction Caltech ?
40 Interval_col_conf ? ?
41 Jade Acedb? ?
42 Lab_Location Caltech ?
43 Laboratory Caltech ?
44 Library Sanger libraries used for sequencing of nematode ESTs // Information to come from Mark Blaxters
45 Life_stage Caltech ?
46 Locus Sanger This class is a reminent that should be cleaned up.
47 ManyMap Sanger ?
48 Map Sanger ?
49 Map_error Sanger ?
50 Map_offset Sanger ?
51 Map_position Sanger ?
52 Mass_spec_experiment Sanger ? Gary Williams
53 Mass_spec_peptide Sanger ? Gary Williams
54 Method ? AceDB class that details display etc. of objects in the other classes
55 Microarray Caltech ?
56 Microarray_experiment Caltech ?
57 Microarray_results Caltech ?
58 Mixed_grid_row Sanger ?
59 Molecule Caltech Used to capture molecules that influence gene activity and affect phenotypes. Karen
60 Motif Sanger ?
61 Movie Caltech ?
62 Multi_counts Sanger? ?
63 MultiMap ? Not used?
64 Multi_pt_data Sanger ?
65 Neurodata ? ?Not Used Raymond
66 Neuro_location ? ? Not Used Raymond
67 Oligo ? ?
68 Oligo_set ? ?
69 Operon Sanger Stores genes that are in Operons Paul Davis
70 Paper Caltech ?
71 PCR_product ? ?
72 Person Caltech ? Cecilia Nakamura
73 Person_name Caltech ?
74 Phenotype Caltech ?
75 Phenotype_Assay Caltech ?
76 Phenotype_name Caltech ?
77 Picture Caltech ?
78 Position_Matrix Caltech ?
79 Pos_neg_data Sanger ?
80 Protein Sanger ?
81 Pseudogene Sanger Stores the Pseudogene models
82 Rearrangement Caltech ?
83 ReconCellInfo OICR ?
84 Reconstruction OICR ?
85 Reference Caltech ?
86 RNAi Caltech Stores information pertaining to RNAi experiments, including RNAi probe targets, resulting phenotypes, and associated papers. Gary Schindleman, Chris Grove
87 SAGE_experiment Sanger ?
88 SAGE_tag Sanger ?
89 Sequence Sanger A broad class for storing genomic, Transcripts Sequence etc.
90 SK_map Caltech ?
91 SO_term Caltech ?
92 Species Sanger ?
93 Strain Sanger ?
94 Structure_data OICR ?
95 Timepoint OICR ?
96 Transcript Sanger Stores RNAgenes and the Full length Coding_transcripts
97 Transgene Caltech ?
98 Transposon Sanger Stores the Transposon span and S_child info Paul Davis
99 Transposon_family Sanger Used for grouping like ?Transposons Paul Davis
100 Variation Sanger ? Mary Ann
101 Variation_name Sanger ?
102 YH Caltech ?
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