Difference between revisions of "AceOjbect Redesign Page"
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Jump to navigationJump to searchm (Protected "AceOjbect Redesign Page": Deprecated by the Google Matrix ([edit=sysop] (indefinite) [move=sysop] (indefinite))) |
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(54 intermediate revisions by 5 users not shown) | |||
Line 1: | Line 1: | ||
== The A - Z of Ace Model and Redesign Page == | == The A - Z of Ace Model and Redesign Page == | ||
− | + | This page serves as an index of available Ace classses; see the [https://spreadsheets.google.com/a/wormbase.org/ccc?key=tygSYCz49YW5hyCcYMHUZ1Q#gid=2 Google Doc] for migration status. | |
{| border="1" class="wikitable" | {| border="1" class="wikitable" | ||
− | |||
|- | |- | ||
! No. | ! No. | ||
Line 12: | Line 11: | ||
! People | ! People | ||
! Comment/Brief Description | ! Comment/Brief Description | ||
− | |- | + | | Link |
+ | | Replaces | ||
+ | |-bgcolor="#F6989D" | ||
| 1 | | 1 | ||
|[[WormBase Model:2_point_data|2_point_data]] | |[[WormBase Model:2_point_data|2_point_data]] | ||
Line 18: | Line 19: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; partner class of Gene and possibly Variation, Rearrangement, Locus | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#D7D7D7" | ||
| 2 | | 2 | ||
| [[WormBase Model:3d_data|3d_data]] | | [[WormBase Model:3d_data|3d_data]] | ||
Line 25: | Line 28: | ||
| | | | ||
| | | | ||
+ | |No API needed. I think this class has been superceded by Structure_data. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 3 | | 3 | ||
|[[WormBase Model:Accession_number|Accession_number]] | |[[WormBase Model:Accession_number|Accession_number]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time; accessed through XREFed classes. | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#FFF79A" |
| 4 | | 4 | ||
| [[WormBase Model:Analysis|Analysis]] | | [[WormBase Model:Analysis|Analysis]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time; Should probably be incorporated into Evidence template display. | ||
| | | | ||
| | | | ||
Line 47: | Line 56: | ||
| | | | ||
| | | | ||
− | |- | + | | |
+ | | | ||
+ | |-bgcolor="#F6989D" | ||
| 6 | | 6 | ||
| [[WormBase Model:Anatomy_name|Anatomy_name]] | | [[WormBase Model:Anatomy_name|Anatomy_name]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time; support class for Anatomy_term. | ||
| | | | ||
| | | | ||
Line 57: | Line 70: | ||
| 7 | | 7 | ||
| [[WormBase Model:Anatomy_term|Anatomy_term]] | | [[WormBase Model:Anatomy_term|Anatomy_term]] | ||
+ | | 80% | ||
| | | | ||
− | | | + | | Norie |
+ | | | ||
| | | | ||
| | | | ||
Line 64: | Line 79: | ||
| 8 | | 8 | ||
| [[WormBase Model:Antibody|Antibody]] | | [[WormBase Model:Antibody|Antibody]] | ||
+ | | Almost done, work with XS on references | ||
| | | | ||
− | | | + | | Norie |
+ | | | ||
| | | | ||
| | | | ||
Line 75: | Line 92: | ||
| | | | ||
| | | | ||
− | |- | + | | |
+ | | | ||
+ | |-bgcolor="#F6989D" | ||
| 10 | | 10 | ||
| [[WormBase Model:Atlas|Atlas]] | | [[WormBase Model:Atlas|Atlas]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time. | ||
| | | | ||
| | | | ||
Line 88: | Line 109: | ||
| | | | ||
| | | | ||
+ | |Person class takes precendence. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 12 | | 12 | ||
| [[WormBase Model:Balancer|Balancer]] | | [[WormBase Model:Balancer|Balancer]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#F6989D" |
| 13 | | 13 | ||
| [[WormBase Model:CDS|CDS]] | | [[WormBase Model:CDS|CDS]] | ||
Line 102: | Line 127: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; support class of Gene and Sequence; accessed through XREFed classes. | ||
+ | | | ||
| | | | ||
− | |- | + | |-bgcolor="#D7D7D7" |
| 14 | | 14 | ||
| [[WormBase Model:Cell|Cell]] | | [[WormBase Model:Cell|Cell]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time. Class is deprecated and no longer maintained. | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#D7D7D7" |
| 15 | | 15 | ||
| [[WormBase Model:Cell_group|Cell_group]] | | [[WormBase Model:Cell_group|Cell_group]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time. Class is deprecated and no longer maintained. | ||
| | | | ||
| | | | ||
Line 122: | Line 153: | ||
| | | | ||
| | | | ||
+ | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 129: | Line 162: | ||
| | | | ||
| | | | ||
+ | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 138: | Line 173: | ||
| | | | ||
| | | | ||
− | |- | + | | |
+ | | | ||
+ | |-bgcolor="#F6989D" | ||
| 19 | | 19 | ||
| [[WormBase Model:Database|Database]] | | [[WormBase Model:Database|Database]] | ||
Line 144: | Line 181: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; accessed from XREFed classes. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 20 | | 20 | ||
| [[WormBase Model:Database_field|Database_field]] | | [[WormBase Model:Database_field|Database_field]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time; accessed from XREFed classes. | ||
| | | | ||
| | | | ||
Line 155: | Line 196: | ||
| 21 | | 21 | ||
| [[WormBase Model:Expression_cluster|Expression_cluster]] | | [[WormBase Model:Expression_cluster|Expression_cluster]] | ||
+ | | 5% | ||
| | | | ||
− | | | + | | Abby |
+ | | just getting search working | ||
| | | | ||
| | | | ||
Line 164: | Line 207: | ||
| | | | ||
| | | | ||
+ | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 169: | Line 214: | ||
| 23 | | 23 | ||
| [[WormBase Model:Expr_profile|Expr_profile]] | | [[WormBase Model:Expr_profile|Expr_profile]] | ||
+ | | 90% | ||
| | | | ||
− | | | + | | Norie |
+ | | Work with Template czar to get other necessary data for details | ||
| | | | ||
| | | | ||
Line 179: | Line 226: | ||
| | | | ||
| | | | ||
+ | | | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 187: | Line 236: | ||
| | | | ||
| | | | ||
− | |- | + | | |
+ | | | ||
+ | |-bgcolor="#82CA9D" | ||
| 26 | | 26 | ||
| [[WormBase Model:Gene|Gene]] | | [[WormBase Model:Gene|Gene]] | ||
− | | | + | | mostly done |
− | | | + | | in progress |
− | | | + | | Norie and Abby |
+ | | will schedule a content/UI call soon | ||
+ | | http://beta.wormbase.org/reports/gene/WBGene00006763 | ||
| | | | ||
|- | |- | ||
| 27 | | 27 | ||
| [[WormBase Model:Gene_class|Gene_class]] | | [[WormBase Model:Gene_class|Gene_class]] | ||
+ | | on going | ||
| | | | ||
− | | | + | | Norie |
− | | | + | | |
+ | | | ||
| | | | ||
|- | |- | ||
Line 208: | Line 263: | ||
| | | | ||
| | | | ||
− | |- | + | | |
+ | | | ||
+ | |-bgcolor="#F6989D" | ||
| 29 | | 29 | ||
| [[WormBase Model:Gene_name|Gene_name]] | | [[WormBase Model:Gene_name|Gene_name]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time; support class for Gene. | ||
| | | | ||
| | | | ||
Line 222: | Line 281: | ||
| | | | ||
| | | | ||
− | |- | + | | |
+ | | | ||
+ | |-bgcolor="#F6989D" | ||
| 31 | | 31 | ||
| [[WormBase Model:Genetic_code|Genetic_code]] | | [[WormBase Model:Genetic_code|Genetic_code]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time. | ||
| | | | ||
| | | | ||
Line 234: | Line 297: | ||
| | | | ||
| | | | ||
+ | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 239: | Line 304: | ||
| 33 | | 33 | ||
| [[WormBase Model:GO_term|GO_term]] | | [[WormBase Model:GO_term|GO_term]] | ||
+ | | Mostly done | ||
| | | | ||
− | | | + | | Norie |
+ | | | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#D7D7D7" |
| 34 | | 34 | ||
| [[WormBase Model:Grid|Grid]] | | [[WormBase Model:Grid|Grid]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API necessary; AceDB internals. | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#D7D7D7" |
| 35 | | 35 | ||
| [[WormBase Model:Grid_data|Grid_data]] | | [[WormBase Model:Grid_data|Grid_data]] | ||
Line 256: | Line 325: | ||
| | | | ||
| | | | ||
+ | |No API necessary; AceDB internals. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#D7D7D7" | ||
| 36 | | 36 | ||
| [[WormBase Model:Grid_row|Grid_row]] | | [[WormBase Model:Grid_row|Grid_row]] | ||
Line 263: | Line 334: | ||
| | | | ||
| | | | ||
+ | |No API necessary; AceDB internals. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 37 | | 37 | ||
| [[WormBase Model:Homol_data|Homol_data]] | | [[WormBase Model:Homol_data|Homol_data]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time; accessed from XREFed classes. | ||
| | | | ||
| | | | ||
Line 276: | Line 351: | ||
| | | | ||
| | | | ||
+ | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 281: | Line 358: | ||
| 39 | | 39 | ||
| [[WormBase Model:Interaction|Interaction]] | | [[WormBase Model:Interaction|Interaction]] | ||
− | | | + | | 80%? |
− | | | + | | ? |
+ | | Norie | ||
+ | | ? | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#D7D7D7" |
| 40 | | 40 | ||
| [[WormBase Model:Interval_col_conf|Interval_col_conf]] | | [[WormBase Model:Interval_col_conf|Interval_col_conf]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API necessary; AceDB internals. | ||
| | | | ||
| | | | ||
− | |- | + | |- bgcolor="#D7D7D7" |
| 41 | | 41 | ||
| [[WormBase Model:Jade|Jade]] | | [[WormBase Model:Jade|Jade]] | ||
Line 298: | Line 379: | ||
| | | | ||
| | | | ||
+ | |No API necessary; AceDB internals. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 42 | | 42 | ||
| [[WormBase Model:Lab_Location|Lab_Location]] | | [[WormBase Model:Lab_Location|Lab_Location]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time. | ||
| | | | ||
| | | | ||
Line 309: | Line 394: | ||
| 43 | | 43 | ||
| [[WormBase Model:Laboratory|Laboratory]] | | [[WormBase Model:Laboratory|Laboratory]] | ||
+ | | 90% | ||
| | | | ||
− | | | + | | Norie |
+ | | | ||
| | | | ||
| | | | ||
Line 317: | Line 404: | ||
| [[WormBase Model:Library|Library]] | | [[WormBase Model:Library|Library]] | ||
| | | | ||
+ | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 325: | Line 414: | ||
| | | | ||
| | | | ||
+ | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 334: | Line 425: | ||
| | | | ||
| | | | ||
− | |- | + | | |
+ | | | ||
+ | |-bgcolor="#D7D7D7" | ||
| 47 | | 47 | ||
| [[WormBase Model:ManyMap|ManyMap]] | | [[WormBase Model:ManyMap|ManyMap]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API necessary; AceDB internals. | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#D7D7D7" |
| 48 | | 48 | ||
| [[WormBase Model:Map|Map]] | | [[WormBase Model:Map|Map]] | ||
Line 347: | Line 442: | ||
| | | | ||
| | | | ||
+ | |No API necessary; AceDB internals. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#D7D7D7" | ||
| 49 | | 49 | ||
| [[WormBase Model:Map_error|Map_error]] | | [[WormBase Model:Map_error|Map_error]] | ||
Line 354: | Line 451: | ||
| | | | ||
| | | | ||
+ | |No API necessary; AceDB internals. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#D7D7D7" | ||
| 50 | | 50 | ||
| [[WormBase Model:Map_offset|Map_offset]] | | [[WormBase Model:Map_offset|Map_offset]] | ||
Line 361: | Line 460: | ||
| | | | ||
| | | | ||
+ | |No API necessary; AceDB internals. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#FFF79A" | ||
| 51 | | 51 | ||
| [[WormBase Model:Map_position|Map_position]] | | [[WormBase Model:Map_position|Map_position]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time; accessed through XREFed classes. | ||
| | | | ||
| | | | ||
Line 375: | Line 478: | ||
| | | | ||
| | | | ||
+ | | | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 383: | Line 488: | ||
| | | | ||
| | | | ||
− | |- | + | | |
+ | | | ||
+ | |-bgcolor="#F6989D" | ||
| 54 | | 54 | ||
| [[WormBase Model:Method|Method]] | | [[WormBase Model:Method|Method]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time. | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#FFF79A" |
| 55 | | 55 | ||
| [[WormBase Model:Microarray|Microarray]] | | [[WormBase Model:Microarray|Microarray]] | ||
Line 396: | Line 505: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; support class of Microarray_results; display being shunted to SPELL at Caltech. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#FFF79A" | ||
| 56 | | 56 | ||
| [[WormBase Model:Microarray_experiment|Microarray_experiment]] | | [[WormBase Model:Microarray_experiment|Microarray_experiment]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time; support class of Microarray_results; display being shunted to SPELL at Caltech. | ||
| | | | ||
| | | | ||
Line 407: | Line 520: | ||
| 57 | | 57 | ||
| [[WormBase Model:Microarray_results|Microarray_results]] | | [[WormBase Model:Microarray_results|Microarray_results]] | ||
+ | | 5% | ||
| | | | ||
+ | | Abby | ||
+ | | Just enabled search results display and searching by gene | ||
| | | | ||
| | | | ||
− | + | |-bgcolor="#D7D7D7" | |
− | |- | ||
| 58 | | 58 | ||
| [[WormBase Model:Mixed_grid_row|Mixed_grid_row]] | | [[WormBase Model:Mixed_grid_row|Mixed_grid_row]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API necessary; AceDB internals. | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#D7D7D7" |
| 59 | | 59 | ||
| [[WormBase Model:Molecule|Molecule]] | | [[WormBase Model:Molecule|Molecule]] | ||
Line 424: | Line 541: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; I don't think this class even exists. | ||
+ | | | ||
| | | | ||
|- | |- | ||
| 60 | | 60 | ||
| [[WormBase Model:Motif|Motif]] | | [[WormBase Model:Motif|Motif]] | ||
− | | | + | | 80%? |
− | | | + | | ? |
+ | | Norie | ||
+ | | ? | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#D7D7D7" |
| 61 | | 61 | ||
| [[WormBase Model:Movie|Movie]] | | [[WormBase Model:Movie|Movie]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API necessary; AceDB internals/accessed from XREFed classes. | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#D7D7D7" |
| 62 | | 62 | ||
| [[WormBase Model:Multi_counts|Multi_counts]] | | [[WormBase Model:Multi_counts|Multi_counts]] | ||
Line 445: | Line 568: | ||
| | | | ||
| | | | ||
+ | |No API necessary; AceDB internals. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#D7D7D7" | ||
| 63 | | 63 | ||
| [[WormBase Model:MultiMap|MultiMap]] | | [[WormBase Model:MultiMap|MultiMap]] | ||
Line 452: | Line 577: | ||
| | | | ||
| | | | ||
+ | |No API necessary; AceDB internals. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 64 | | 64 | ||
| [[WormBase Model:Multi_pt_data|Multi_pt_data]] | | [[WormBase Model:Multi_pt_data|Multi_pt_data]] | ||
Line 459: | Line 586: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; accessed from XREFed classes. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#FFF79A" | ||
| 65 | | 65 | ||
| [[WormBase Model:Neurodata|Neurodata]] | | [[WormBase Model:Neurodata|Neurodata]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time. Is this class deprecated? | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#FFF79A" |
| 66 | | 66 | ||
| [[WormBase Model:Neuro_location|Neuro_location]] | | [[WormBase Model:Neuro_location|Neuro_location]] | ||
Line 473: | Line 604: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time. Is this class deprecated? | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 67 | | 67 | ||
| [[WormBase Model:Oligo|Oligo]] | | [[WormBase Model:Oligo|Oligo]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time; accessed through XREFed classes like PCR_product. | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#F6989D" |
| 68 | | 68 | ||
| [[WormBase Model:Oligo_set|Oligo_set]] | | [[WormBase Model:Oligo_set|Oligo_set]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time; accessed through XREFed classes. | ||
| | | | ||
| | | | ||
Line 491: | Line 628: | ||
| 69 | | 69 | ||
| [[WormBase Model:Operon|Operon]] | | [[WormBase Model:Operon|Operon]] | ||
− | | | + | | 90 % |
+ | | | ||
+ | | Norie | ||
+ | | Work with XS on data needed for image | ||
| | | | ||
− | |||
| | | | ||
|- | |- | ||
| 70 | | 70 | ||
| [[WormBase Model:Paper|Paper]] | | [[WormBase Model:Paper|Paper]] | ||
− | | | + | | 50% |
− | | | + | | 50% |
− | | | + | | Xiaoqi |
+ | | ? | ||
+ | | http://beta.wormbase.org/reports/paper/WBPaper00015392 | ||
| | | | ||
|- | |- | ||
Line 507: | Line 648: | ||
| | | | ||
| | | | ||
+ | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 512: | Line 655: | ||
| 72 | | 72 | ||
| [[WormBase Model:Person|Person]] | | [[WormBase Model:Person|Person]] | ||
− | | | + | | 80%? |
− | | | + | | ? |
+ | | Norie | ||
+ | | ? | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#F6989D" |
| 73 | | 73 | ||
| [[WormBase Model:Person_name|Person_name]] | | [[WormBase Model:Person_name|Person_name]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time; support class for searching the Person class. | ||
| | | | ||
| | | | ||
Line 526: | Line 673: | ||
| 74 | | 74 | ||
| [[WormBase Model:Phenotype|Phenotype]] | | [[WormBase Model:Phenotype|Phenotype]] | ||
− | | | + | | 85% |
− | | | + | | 85% |
+ | | Xiaoqi | ||
+ | | will schedule a call soon | ||
+ | | http://beta.wormbase.org/reports/phenotype/WBPhenotype:0000039 | ||
| | | | ||
− | + | |-bgcolor="#F6989D" | |
− | |- | ||
| 75 | | 75 | ||
| [[WormBase Model:Phenotype_Assay|Phenotype_Assay]] | | [[WormBase Model:Phenotype_Assay|Phenotype_Assay]] | ||
Line 536: | Line 685: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; support class of Phenotype; accessed through XREFed classes. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 76 | | 76 | ||
| [[WormBase Model:Phenotype_name|Phenotype_name]] | | [[WormBase Model:Phenotype_name|Phenotype_name]] | ||
Line 543: | Line 694: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; support class for searching Phenotype. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#D7D7D7" | ||
| 77 | | 77 | ||
| [[WormBase Model:Picture|Picture]] | | [[WormBase Model:Picture|Picture]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed; AceDB internals. | ||
| | | | ||
| | | | ||
Line 558: | Line 713: | ||
| | | | ||
| | | | ||
− | |- | + | | |
+ | | | ||
+ | |-bgcolor="#F6989D" | ||
| 79 | | 79 | ||
| [[WormBase Model:Pos_neg_data|Pos_neg_data]] | | [[WormBase Model:Pos_neg_data|Pos_neg_data]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time; accessed through XREFed classes. | ||
| | | | ||
| | | | ||
Line 568: | Line 727: | ||
| 80 | | 80 | ||
| [[WormBase Model:Protein|Protein]] | | [[WormBase Model:Protein|Protein]] | ||
− | | | + | | 90% |
− | | | + | | 90% |
+ | | Xiaoqi | ||
+ | | Content/UI call done on 07/08/10, rather simple model should be finish soon. | ||
+ | | http://beta.wormbase.org/reports/protein/WP:CE28239 | ||
| | | | ||
− | + | |-bgcolor="#FFF79A" | |
− | |- | ||
| 81 | | 81 | ||
| [[WormBase Model:Pseudogene|Pseudogene]] | | [[WormBase Model:Pseudogene|Pseudogene]] | ||
Line 578: | Line 739: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; support class of Gene; *possibly* needed for future enhancements. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#FFF79A" | ||
| 82 | | 82 | ||
| [[WormBase Model:Rearrangement|Rearrangement]] | | [[WormBase Model:Rearrangement|Rearrangement]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time; support class of Variation. *POSSIBLY* needed for future enhancements. | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#FFF79A" |
| 83 | | 83 | ||
| [[WormBase Model:ReconCellInfo|ReconCellInfo]] | | [[WormBase Model:ReconCellInfo|ReconCellInfo]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time. | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#FFF79A" |
| 84 | | 84 | ||
| [[WormBase Model:Reconstruction|Reconstruction]] | | [[WormBase Model:Reconstruction|Reconstruction]] | ||
Line 599: | Line 766: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time. Ask Raymond about this class. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 85 | | 85 | ||
| [[WormBase Model:Reference|Reference]] | | [[WormBase Model:Reference|Reference]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time; this seems to be a helper class of Paper anyways. | ||
| | | | ||
| | | | ||
Line 610: | Line 781: | ||
| 86 | | 86 | ||
| [[WormBase Model:RNAi|RNAi]] | | [[WormBase Model:RNAi|RNAi]] | ||
− | | | + | | 80% |
| | | | ||
− | | | + | | Norie |
+ | | Work with XS on references | ||
+ | | | ||
| | | | ||
− | |- | + | |-bgcolor="#F6989D" |
| 87 | | 87 | ||
| [[WormBase Model:SAGE_experiment|SAGE_experiment]] | | [[WormBase Model:SAGE_experiment|SAGE_experiment]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time. Support class of Sage_tag. | ||
| | | | ||
| | | | ||
Line 626: | Line 801: | ||
| | | | ||
| | | | ||
+ | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 631: | Line 808: | ||
| 89 | | 89 | ||
| [[WormBase Model:Sequence|Sequence]] | | [[WormBase Model:Sequence|Sequence]] | ||
− | | | + | | 80% |
− | | | + | | 80% |
− | | | + | | Xiaoqi |
+ | | Content/UI call on 07/10/10, lots of feedback | ||
+ | | http://beta.wormbase.org/reports/sequence/JC8.10a | ||
| | | | ||
|- | |- | ||
Line 642: | Line 821: | ||
| | | | ||
| | | | ||
− | |- | + | | |
+ | | | ||
+ | |-bgcolor="#D7D7D7" | ||
| 91 | | 91 | ||
| [[WormBase Model:SO_term|SO_term]] | | [[WormBase Model:SO_term|SO_term]] | ||
Line 648: | Line 829: | ||
| | | | ||
| | | | ||
+ | |No API necessary; AceDB internals. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 92 | | 92 | ||
| [[WormBase Model:Species|Species]] | | [[WormBase Model:Species|Species]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time. We will link Taxonomy to a (likely hand-coded) page describing that species and available resources. | ||
| | | | ||
| | | | ||
Line 659: | Line 844: | ||
| 93 | | 93 | ||
| [[WormBase Model:Strain|Strain]] | | [[WormBase Model:Strain|Strain]] | ||
− | | | + | | 80%? |
− | | | + | | ? |
+ | | Norie | ||
+ | | ? | ||
| | | | ||
| | | | ||
Line 670: | Line 857: | ||
| | | | ||
| | | | ||
− | |- | + | | |
+ | | | ||
+ | |-bgcolor="#F6989D" | ||
| 95 | | 95 | ||
| [[WormBase Model:Timepoint|Timepoint]] | | [[WormBase Model:Timepoint|Timepoint]] | ||
Line 676: | Line 865: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 96 | | 96 | ||
| [[WormBase Model:Transcript|Transcript]] | | [[WormBase Model:Transcript|Transcript]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time; support class of Gene and Sequence; accessed through XREFed classes. | ||
| | | | ||
| | | | ||
Line 687: | Line 880: | ||
| 97 | | 97 | ||
| [[WormBase Model:Transgene|Transgene]] | | [[WormBase Model:Transgene|Transgene]] | ||
− | | | + | | 80%? |
− | | | + | | ? |
− | | | + | | Norie |
+ | | ? | ||
+ | | | ||
| | | | ||
− | |- | + | |-bgcolor="#F6989D" |
| 98 | | 98 | ||
| [[WormBase Model:Transposon|Transposon]] | | [[WormBase Model:Transposon|Transposon]] | ||
Line 697: | Line 892: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; support class of Transposon and Variation; accessed through XREFed classes. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 99 | | 99 | ||
| [[WormBase Model:Transposon_family|Transposon_family]] | | [[WormBase Model:Transposon_family|Transposon_family]] | ||
Line 704: | Line 901: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; support class of Transposon & variation; accessed through XREFed classes. | ||
+ | | | ||
| | | | ||
|- | |- | ||
| 100 | | 100 | ||
| [[WormBase Model:Variation|Variation]] | | [[WormBase Model:Variation|Variation]] | ||
− | | | + | | 85% |
− | | | + | | 85% |
− | | | + | | Todd |
+ | | content/UI call finish on 06/25/10, will schedule another follow up call | ||
+ | | http://beta.wormbase.org/reports/variation/WBVar00182432 | ||
| | | | ||
− | |- | + | |-bgcolor="#F6989D" |
| 101 | | 101 | ||
| [[WormBase Model:Variation_name|Variation_name]] | | [[WormBase Model:Variation_name|Variation_name]] | ||
| | | | ||
| | | | ||
+ | | | ||
+ | |No API needed at this time; support class for Variation. | ||
| | | | ||
| | | | ||
Line 726: | Line 929: | ||
| | | | ||
|} | |} | ||
+ | |||
+ | |||
+ | [[Category:Developer documentation]] | ||
+ | [[Category:WormBase 2.0]] |
Latest revision as of 18:14, 15 June 2011
The A - Z of Ace Model and Redesign Page
This page serves as an index of available Ace classses; see the Google Doc for migration status.
No. | Name | API | Template | People | Comment/Brief Description | Link | Replaces |
---|---|---|---|---|---|---|---|
1 | 2_point_data | No API needed at this time; partner class of Gene and possibly Variation, Rearrangement, Locus | |||||
2 | 3d_data | No API needed. I think this class has been superceded by Structure_data. | |||||
3 | Accession_number | No API needed at this time; accessed through XREFed classes. | |||||
4 | Analysis | No API needed at this time; Should probably be incorporated into Evidence template display. | |||||
5 | Anatomy_function | ||||||
6 | Anatomy_name | No API needed at this time; support class for Anatomy_term. | |||||
7 | Anatomy_term | 80% | Norie | ||||
8 | Antibody | Almost done, work with XS on references | Norie | ||||
9 | AO_code | ||||||
10 | Atlas | No API needed at this time. | |||||
11 | Author | Person class takes precendence. | |||||
12 | Balancer | No API needed at this time | |||||
13 | CDS | No API needed at this time; support class of Gene and Sequence; accessed through XREFed classes. | |||||
14 | Cell | No API needed at this time. Class is deprecated and no longer maintained. | |||||
15 | Cell_group | No API needed at this time. Class is deprecated and no longer maintained. | |||||
16 | Clone | ||||||
17 | Condition | ||||||
18 | Contig | ||||||
19 | Database | No API needed at this time; accessed from XREFed classes. | |||||
20 | Database_field | No API needed at this time; accessed from XREFed classes. | |||||
21 | Expression_cluster | 5% | Abby | just getting search working | |||
22 | Expr_pattern | ||||||
23 | Expr_profile | 90% | Norie | Work with Template czar to get other necessary data for details | |||
24 | Feature | ||||||
25 | Feature_data | ||||||
26 | Gene | mostly done | in progress | Norie and Abby | will schedule a content/UI call soon | http://beta.wormbase.org/reports/gene/WBGene00006763 | |
27 | Gene_class | on going | Norie | ||||
28 | Gene_cluster | ||||||
29 | Gene_name | No API needed at this time; support class for Gene. | |||||
30 | Gene_regulation | ||||||
31 | Genetic_code | No API needed at this time. | |||||
32 | GO_code | ||||||
33 | GO_term | Mostly done | Norie | ||||
34 | Grid | No API necessary; AceDB internals. | |||||
35 | Grid_data | No API necessary; AceDB internals. | |||||
36 | Grid_row | No API necessary; AceDB internals. | |||||
37 | Homol_data | No API needed at this time; accessed from XREFed classes. | |||||
38 | Homology_group | ||||||
39 | Interaction | 80%? | ? | Norie | ? | ||
40 | Interval_col_conf | No API necessary; AceDB internals. | |||||
41 | Jade | No API necessary; AceDB internals. | |||||
42 | Lab_Location | No API needed at this time. | |||||
43 | Laboratory | 90% | Norie | ||||
44 | Library | ||||||
45 | Life_stage | ||||||
46 | Locus | ||||||
47 | ManyMap | No API necessary; AceDB internals. | |||||
48 | Map | No API necessary; AceDB internals. | |||||
49 | Map_error | No API necessary; AceDB internals. | |||||
50 | Map_offset | No API necessary; AceDB internals. | |||||
51 | Map_position | No API needed at this time; accessed through XREFed classes. | |||||
52 | Mass_spec_experiment | ||||||
53 | Mass_spec_peptide | ||||||
54 | Method | No API needed at this time. | |||||
55 | Microarray | No API needed at this time; support class of Microarray_results; display being shunted to SPELL at Caltech. | |||||
56 | Microarray_experiment | No API needed at this time; support class of Microarray_results; display being shunted to SPELL at Caltech. | |||||
57 | Microarray_results | 5% | Abby | Just enabled search results display and searching by gene | |||
58 | Mixed_grid_row | No API necessary; AceDB internals. | |||||
59 | Molecule | No API needed at this time; I don't think this class even exists. | |||||
60 | Motif | 80%? | ? | Norie | ? | ||
61 | Movie | No API necessary; AceDB internals/accessed from XREFed classes. | |||||
62 | Multi_counts | No API necessary; AceDB internals. | |||||
63 | MultiMap | No API necessary; AceDB internals. | |||||
64 | Multi_pt_data | No API needed at this time; accessed from XREFed classes. | |||||
65 | Neurodata | No API needed at this time. Is this class deprecated? | |||||
66 | Neuro_location | No API needed at this time. Is this class deprecated? | |||||
67 | Oligo | No API needed at this time; accessed through XREFed classes like PCR_product. | |||||
68 | Oligo_set | No API needed at this time; accessed through XREFed classes. | |||||
69 | Operon | 90 % | Norie | Work with XS on data needed for image | |||
70 | Paper | 50% | 50% | Xiaoqi | ? | http://beta.wormbase.org/reports/paper/WBPaper00015392 | |
71 | PCR_product | ||||||
72 | Person | 80%? | ? | Norie | ? | ||
73 | Person_name | No API needed at this time; support class for searching the Person class. | |||||
74 | Phenotype | 85% | 85% | Xiaoqi | will schedule a call soon | http://beta.wormbase.org/reports/phenotype/WBPhenotype:0000039 | |
75 | Phenotype_Assay | No API needed at this time; support class of Phenotype; accessed through XREFed classes. | |||||
76 | Phenotype_name | No API needed at this time; support class for searching Phenotype. | |||||
77 | Picture | No API needed; AceDB internals. | |||||
78 | Position_Matrix | ||||||
79 | Pos_neg_data | No API needed at this time; accessed through XREFed classes. | |||||
80 | Protein | 90% | 90% | Xiaoqi | Content/UI call done on 07/08/10, rather simple model should be finish soon. | http://beta.wormbase.org/reports/protein/WP:CE28239 | |
81 | Pseudogene | No API needed at this time; support class of Gene; *possibly* needed for future enhancements. | |||||
82 | Rearrangement | No API needed at this time; support class of Variation. *POSSIBLY* needed for future enhancements. | |||||
83 | ReconCellInfo | No API needed at this time. | |||||
84 | Reconstruction | No API needed at this time. Ask Raymond about this class. | |||||
85 | Reference | No API needed at this time; this seems to be a helper class of Paper anyways. | |||||
86 | RNAi | 80% | Norie | Work with XS on references | |||
87 | SAGE_experiment | No API needed at this time. Support class of Sage_tag. | |||||
88 | SAGE_tag | ||||||
89 | Sequence | 80% | 80% | Xiaoqi | Content/UI call on 07/10/10, lots of feedback | http://beta.wormbase.org/reports/sequence/JC8.10a | |
90 | SK_map | ||||||
91 | SO_term | No API necessary; AceDB internals. | |||||
92 | Species | No API needed at this time. We will link Taxonomy to a (likely hand-coded) page describing that species and available resources. | |||||
93 | Strain | 80%? | ? | Norie | ? | ||
94 | Structure_data | ||||||
95 | Timepoint | No API needed at this time. | |||||
96 | Transcript | No API needed at this time; support class of Gene and Sequence; accessed through XREFed classes. | |||||
97 | Transgene | 80%? | ? | Norie | ? | ||
98 | Transposon | No API needed at this time; support class of Transposon and Variation; accessed through XREFed classes. | |||||
99 | Transposon_family | No API needed at this time; support class of Transposon & variation; accessed through XREFed classes. | |||||
100 | Variation | 85% | 85% | Todd | content/UI call finish on 06/25/10, will schedule another follow up call | http://beta.wormbase.org/reports/variation/WBVar00182432 | |
101 | Variation_name | No API needed at this time; support class for Variation. | |||||
102 | YH |