Difference between revisions of "AceOjbect Redesign Page"
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Revision as of 21:28, 13 August 2010
The A - Z of Ace Model and Redesign Page
No. | Name | API | Template | People | Comment/Brief Description | Link | Replaces |
---|---|---|---|---|---|---|---|
1 | 2_point_data | No API needed at this time; partner class of Gene and possibly Variation, Rearrangement, Locus | |||||
2 | 3d_data | No API needed. I think this class has been superceded by Structure_data. | |||||
3 | Accession_number | No API needed at this time; accessed through XREFed classes. | |||||
4 | Analysis | No API needed at this time; Should probably be incorporated into Evidence template display. | |||||
5 | Anatomy_function | ||||||
6 | Anatomy_name | No API needed at this time; support class for Anatomy_term. | |||||
7 | Anatomy_term | 80% | Norie | ||||
8 | Antibody | Almost done, work with XS on references | Norie | ||||
9 | AO_code | ||||||
10 | Atlas | No API needed at this time. | |||||
11 | Author | Person class takes precendence. | |||||
12 | Balancer | No API needed at this time | |||||
13 | CDS | No API needed at this time; support class of Gene and Sequence; accessed through XREFed classes. | |||||
14 | Cell | No API needed at this time. Class is deprecated and no longer maintained. | |||||
15 | Cell_group | No API needed at this time. Class is deprecated and no longer maintained. | |||||
16 | Clone | ||||||
17 | Condition | ||||||
18 | Contig | ||||||
19 | Database | No API needed at this time; accessed from XREFed classes. | |||||
20 | Database_field | No API needed at this time; accessed from XREFed classes. | |||||
21 | Expression_cluster | ||||||
22 | Expr_pattern | ||||||
23 | Expr_profile | 90% | Norie | Work with Template czar to get other necessary data for details | |||
24 | Feature | ||||||
25 | Feature_data | ||||||
26 | Gene | mostly done | in progress | Norie and Abby | will schedule a content/UI call soon | http://beta.wormbase.org/reports/gene/WBGene00006763 | |
27 | Gene_class | on going | Norie | ||||
28 | Gene_cluster | ||||||
29 | Gene_name | No API needed at this time; support class for Gene. | |||||
30 | Gene_regulation | ||||||
31 | Genetic_code | No API needed at this time. | |||||
32 | GO_code | ||||||
33 | GO_term | Mostly done | Norie | ||||
34 | Grid | No API necessary; AceDB internals. | |||||
35 | Grid_data | No API necessary; AceDB internals. | |||||
36 | Grid_row | No API necessary; AceDB internals. | |||||
37 | Homol_data | No API needed at this time; accessed from XREFed classes. | |||||
38 | Homology_group | ||||||
39 | Interaction | 80%? | ? | Norie | ? | ||
40 | Interval_col_conf | No API necessary; AceDB internals. | |||||
41 | Jade | No API necessary; AceDB internals. | |||||
42 | Lab_Location | No API needed at this time. | |||||
43 | Laboratory | ||||||
44 | Library | ||||||
45 | Life_stage | ||||||
46 | Locus | ||||||
47 | ManyMap | No API necessary; AceDB internals. | |||||
48 | Map | No API necessary; AceDB internals. | |||||
49 | Map_error | No API necessary; AceDB internals. | |||||
50 | Map_offset | No API necessary; AceDB internals. | |||||
51 | Map_position | No API needed at this time; accessed through XREFed classes. | |||||
52 | Mass_spec_experiment | ||||||
53 | Mass_spec_peptide | ||||||
54 | Method | No API needed at this time. | |||||
55 | Microarray | No API needed at this time; support class of Microarray_results; display being shunted to SPELL at Caltech. | |||||
56 | Microarray_experiment | No API needed at this time; support class of Microarray_results; display being shunted to SPELL at Caltech. | |||||
57 | Microarray_results | 5% | Abby | Just enabled searching | |||
58 | Mixed_grid_row | No API necessary; AceDB internals. | |||||
59 | Molecule | No API needed at this time; I don't think this class even exists. | |||||
60 | Motif | 80%? | ? | Norie | ? | ||
61 | Movie | No API necessary; AceDB internals/accessed from XREFed classes. | |||||
62 | Multi_counts | No API necessary; AceDB internals. | |||||
63 | MultiMap | No API necessary; AceDB internals. | |||||
64 | Multi_pt_data | No API needed at this time; accessed from XREFed classes. | |||||
65 | Neurodata | No API needed at this time. Is this class deprecated? | |||||
66 | Neuro_location | No API needed at this time. Is this class deprecated? | |||||
67 | Oligo | No API needed at this time; accessed through XREFed classes like PCR_product. | |||||
68 | Oligo_set | No API needed at this time; accessed through XREFed classes. | |||||
69 | Operon | ||||||
70 | Paper | 50% | 50% | Xiaoqi | ? | http://beta.wormbase.org/reports/paper/WBPaper00015392 | |
71 | PCR_product | ||||||
72 | Person | 80%? | ? | Norie | ? | ||
73 | Person_name | No API needed at this time; support class for searching the Person class. | |||||
74 | Phenotype | 85% | 85% | Xiaoqi | will schedule a call soon | http://beta.wormbase.org/reports/phenotype/WBPhenotype:0000039 | |
75 | Phenotype_Assay | No API needed at this time; support class of Phenotype; accessed through XREFed classes. | |||||
76 | Phenotype_name | No API needed at this time; support class for searching Phenotype. | |||||
77 | Picture | No API needed; AceDB internals. | |||||
78 | Position_Matrix | ||||||
79 | Pos_neg_data | No API needed at this time; accessed through XREFed classes. | |||||
80 | Protein | 90% | 90% | Xiaoqi | Content/UI call done on 07/08/10, rather simple model should be finish soon. | http://beta.wormbase.org/reports/protein/WP:CE28239 | |
81 | Pseudogene | No API needed at this time; support class of Gene; *possibly* needed for future enhancements. | |||||
82 | Rearrangement | No API needed at this time; support class of Variation. *POSSIBLY* needed for future enhancements. | |||||
83 | ReconCellInfo | No API needed at this time. | |||||
84 | Reconstruction | No API needed at this time. Ask Raymond about this class. | |||||
85 | Reference | No API needed at this time; this seems to be a helper class of Paper anyways. | |||||
86 | RNAi | 80% | Norie | Work with XS on references | |||
87 | SAGE_experiment | No API needed at this time. Support class of Sage_tag. | |||||
88 | SAGE_tag | ||||||
89 | Sequence | 80% | 80% | Xiaoqi | Content/UI call on 07/10/10, lots of feedback | http://beta.wormbase.org/reports/sequence/JC8.10a | |
90 | SK_map | ||||||
91 | SO_term | No API necessary; AceDB internals. | |||||
92 | Species | No API needed at this time. We will link Taxonomy to a (likely hand-coded) page describing that species and available resources. | |||||
93 | Strain | 80%? | ? | Norie | ? | ||
94 | Structure_data | ||||||
95 | Timepoint | No API needed at this time. | |||||
96 | Transcript | No API needed at this time; support class of Gene and Sequence; accessed through XREFed classes. | |||||
97 | Transgene | 80%? | ? | Norie | ? | ||
98 | Transposon | No API needed at this time; support class of Transposon and Variation; accessed through XREFed classes. | |||||
99 | Transposon_family | No API needed at this time; support class of Transposon & variation; accessed through XREFed classes. | |||||
100 | Variation | 85% | 85% | Todd | content/UI call finish on 06/25/10, will schedule another follow up call | http://beta.wormbase.org/reports/variation/WBVar00182432 | |
101 | Variation_name | No API needed at this time; support class for Variation. | |||||
102 | YH |