Difference between revisions of "AceOjbect Redesign Page"
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Jump to navigationJump to searchm (Protected "AceOjbect Redesign Page": Deprecated by the Google Matrix ([edit=sysop] (indefinite) [move=sysop] (indefinite))) |
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(37 intermediate revisions by 4 users not shown) | |||
Line 1: | Line 1: | ||
== The A - Z of Ace Model and Redesign Page == | == The A - Z of Ace Model and Redesign Page == | ||
− | + | This page serves as an index of available Ace classses; see the [https://spreadsheets.google.com/a/wormbase.org/ccc?key=tygSYCz49YW5hyCcYMHUZ1Q#gid=2 Google Doc] for migration status. | |
{| border="1" class="wikitable" | {| border="1" class="wikitable" | ||
Line 12: | Line 12: | ||
! Comment/Brief Description | ! Comment/Brief Description | ||
| Link | | Link | ||
+ | | Replaces | ||
|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
| 1 | | 1 | ||
Line 18: | Line 19: | ||
| | | | ||
| | | | ||
− | |No | + | |No API needed at this time; partner class of Gene and possibly Variation, Rearrangement, Locus |
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#D7D7D7" | ||
| 2 | | 2 | ||
| [[WormBase Model:3d_data|3d_data]] | | [[WormBase Model:3d_data|3d_data]] | ||
Line 26: | Line 28: | ||
| | | | ||
| | | | ||
+ | |No API needed. I think this class has been superceded by Structure_data. | ||
| | | | ||
| | | | ||
Line 34: | Line 37: | ||
| | | | ||
| | | | ||
− | |No | + | |No API needed at this time; accessed through XREFed classes. |
+ | | | ||
| | | | ||
− | |- | + | |-bgcolor="#FFF79A" |
| 4 | | 4 | ||
| [[WormBase Model:Analysis|Analysis]] | | [[WormBase Model:Analysis|Analysis]] | ||
Line 42: | Line 46: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; Should probably be incorporated into Evidence template display. | ||
| | | | ||
| | | | ||
Line 52: | Line 57: | ||
| | | | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 6 | | 6 | ||
| [[WormBase Model:Anatomy_name|Anatomy_name]] | | [[WormBase Model:Anatomy_name|Anatomy_name]] | ||
Line 58: | Line 64: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; support class for Anatomy_term. | ||
| | | | ||
| | | | ||
Line 63: | Line 70: | ||
| 7 | | 7 | ||
| [[WormBase Model:Anatomy_term|Anatomy_term]] | | [[WormBase Model:Anatomy_term|Anatomy_term]] | ||
+ | | 80% | ||
| | | | ||
− | | | + | | Norie |
| | | | ||
| | | | ||
Line 71: | Line 79: | ||
| 8 | | 8 | ||
| [[WormBase Model:Antibody|Antibody]] | | [[WormBase Model:Antibody|Antibody]] | ||
+ | | Almost done, work with XS on references | ||
| | | | ||
− | | | + | | Norie |
| | | | ||
| | | | ||
Line 81: | Line 90: | ||
| | | | ||
| | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 90: | Line 100: | ||
| | | | ||
| | | | ||
− | |No | + | |No API needed at this time. |
+ | | | ||
| | | | ||
|- | |- | ||
Line 99: | Line 110: | ||
| | | | ||
|Person class takes precendence. | |Person class takes precendence. | ||
+ | | | ||
| | | | ||
|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
Line 106: | Line 118: | ||
| | | | ||
| | | | ||
− | |No | + | |No API needed at this time |
+ | | | ||
| | | | ||
− | |- | + | |-bgcolor="#F6989D" |
| 13 | | 13 | ||
| [[WormBase Model:CDS|CDS]] | | [[WormBase Model:CDS|CDS]] | ||
Line 114: | Line 127: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; support class of Gene and Sequence; accessed through XREFed classes. | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#D7D7D7" |
| 14 | | 14 | ||
| [[WormBase Model:Cell|Cell]] | | [[WormBase Model:Cell|Cell]] | ||
Line 122: | Line 136: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time. Class is deprecated and no longer maintained. | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#D7D7D7" |
| 15 | | 15 | ||
| [[WormBase Model:Cell_group|Cell_group]] | | [[WormBase Model:Cell_group|Cell_group]] | ||
Line 130: | Line 145: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time. Class is deprecated and no longer maintained. | ||
| | | | ||
| | | | ||
Line 137: | Line 153: | ||
| | | | ||
| | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 145: | Line 162: | ||
| | | | ||
| | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 153: | Line 171: | ||
| | | | ||
| | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 162: | Line 181: | ||
| | | | ||
| | | | ||
− | |No | + | |No API needed at this time; accessed from XREFed classes. |
+ | | | ||
| | | | ||
|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
Line 170: | Line 190: | ||
| | | | ||
| | | | ||
− | |No | + | |No API needed at this time; accessed from XREFed classes. |
+ | | | ||
| | | | ||
|- | |- | ||
| 21 | | 21 | ||
| [[WormBase Model:Expression_cluster|Expression_cluster]] | | [[WormBase Model:Expression_cluster|Expression_cluster]] | ||
+ | | 5% | ||
| | | | ||
− | | | + | | Abby |
− | | | + | | just getting search working |
| | | | ||
| | | | ||
Line 185: | Line 207: | ||
| | | | ||
| | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 191: | Line 214: | ||
| 23 | | 23 | ||
| [[WormBase Model:Expr_profile|Expr_profile]] | | [[WormBase Model:Expr_profile|Expr_profile]] | ||
+ | | 90% | ||
| | | | ||
− | | | + | | Norie |
− | | | + | | Work with Template czar to get other necessary data for details |
| | | | ||
| | | | ||
Line 202: | Line 226: | ||
| | | | ||
| | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 212: | Line 237: | ||
| | | | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#82CA9D" | ||
| 26 | | 26 | ||
| [[WormBase Model:Gene|Gene]] | | [[WormBase Model:Gene|Gene]] | ||
| mostly done | | mostly done | ||
− | | in | + | | in progress |
| Norie and Abby | | Norie and Abby | ||
| will schedule a content/UI call soon | | will schedule a content/UI call soon | ||
| http://beta.wormbase.org/reports/gene/WBGene00006763 | | http://beta.wormbase.org/reports/gene/WBGene00006763 | ||
+ | | | ||
|- | |- | ||
| 27 | | 27 | ||
| [[WormBase Model:Gene_class|Gene_class]] | | [[WormBase Model:Gene_class|Gene_class]] | ||
+ | | on going | ||
| | | | ||
− | | | + | | Norie |
− | | | + | | |
| | | | ||
| | | | ||
Line 236: | Line 264: | ||
| | | | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 29 | | 29 | ||
| [[WormBase Model:Gene_name|Gene_name]] | | [[WormBase Model:Gene_name|Gene_name]] | ||
Line 242: | Line 271: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; support class for Gene. | ||
| | | | ||
| | | | ||
Line 252: | Line 282: | ||
| | | | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 31 | | 31 | ||
| [[WormBase Model:Genetic_code|Genetic_code]] | | [[WormBase Model:Genetic_code|Genetic_code]] | ||
Line 258: | Line 289: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time. | ||
| | | | ||
| | | | ||
Line 265: | Line 297: | ||
| | | | ||
| | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 271: | Line 304: | ||
| 33 | | 33 | ||
| [[WormBase Model:GO_term|GO_term]] | | [[WormBase Model:GO_term|GO_term]] | ||
+ | | Mostly done | ||
| | | | ||
− | | | + | | Norie |
| | | | ||
| | | | ||
Line 283: | Line 317: | ||
| | | | ||
|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
+ | | | ||
| | | | ||
|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
Line 291: | Line 326: | ||
| | | | ||
|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
+ | | | ||
| | | | ||
|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
Line 299: | Line 335: | ||
| | | | ||
|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
+ | | | ||
| | | | ||
|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
Line 306: | Line 343: | ||
| | | | ||
| | | | ||
− | |No API | + | |No API needed at this time; accessed from XREFed classes. |
+ | | | ||
| | | | ||
|- | |- | ||
Line 313: | Line 351: | ||
| | | | ||
| | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 323: | Line 362: | ||
| Norie | | Norie | ||
| ? | | ? | ||
+ | | | ||
| | | | ||
|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
Line 331: | Line 371: | ||
| | | | ||
|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
+ | | | ||
| | | | ||
|- bgcolor="#D7D7D7" | |- bgcolor="#D7D7D7" | ||
Line 340: | Line 381: | ||
|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 42 | | 42 | ||
| [[WormBase Model:Lab_Location|Lab_Location]] | | [[WormBase Model:Lab_Location|Lab_Location]] | ||
Line 346: | Line 388: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time. | ||
| | | | ||
| | | | ||
Line 351: | Line 394: | ||
| 43 | | 43 | ||
| [[WormBase Model:Laboratory|Laboratory]] | | [[WormBase Model:Laboratory|Laboratory]] | ||
+ | | 90% | ||
| | | | ||
− | | | + | | Norie |
| | | | ||
| | | | ||
Line 360: | Line 404: | ||
| [[WormBase Model:Library|Library]] | | [[WormBase Model:Library|Library]] | ||
| | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 369: | Line 414: | ||
| | | | ||
| | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 376: | Line 422: | ||
| [[WormBase Model:Locus|Locus]] | | [[WormBase Model:Locus|Locus]] | ||
| | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 388: | Line 435: | ||
|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#D7D7D7" | ||
| 48 | | 48 | ||
| [[WormBase Model:Map|Map]] | | [[WormBase Model:Map|Map]] | ||
Line 394: | Line 442: | ||
| | | | ||
| | | | ||
+ | |No API necessary; AceDB internals. | ||
| | | | ||
| | | | ||
Line 403: | Line 452: | ||
| | | | ||
|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
+ | | | ||
| | | | ||
|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
Line 412: | Line 462: | ||
|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#FFF79A" | ||
| 51 | | 51 | ||
| [[WormBase Model:Map_position|Map_position]] | | [[WormBase Model:Map_position|Map_position]] | ||
Line 418: | Line 469: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; accessed through XREFed classes. | ||
| | | | ||
| | | | ||
Line 426: | Line 478: | ||
| | | | ||
| | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 436: | Line 489: | ||
| | | | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 54 | | 54 | ||
| [[WormBase Model:Method|Method]] | | [[WormBase Model:Method|Method]] | ||
Line 442: | Line 496: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time. | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#FFF79A" |
| 55 | | 55 | ||
| [[WormBase Model:Microarray|Microarray]] | | [[WormBase Model:Microarray|Microarray]] | ||
Line 450: | Line 505: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; support class of Microarray_results; display being shunted to SPELL at Caltech. | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#FFF79A" |
| 56 | | 56 | ||
| [[WormBase Model:Microarray_experiment|Microarray_experiment]] | | [[WormBase Model:Microarray_experiment|Microarray_experiment]] | ||
Line 458: | Line 514: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; support class of Microarray_results; display being shunted to SPELL at Caltech. | ||
| | | | ||
| | | | ||
Line 463: | Line 520: | ||
| 57 | | 57 | ||
| [[WormBase Model:Microarray_results|Microarray_results]] | | [[WormBase Model:Microarray_results|Microarray_results]] | ||
+ | | 5% | ||
| | | | ||
+ | | Abby | ||
+ | | Just enabled search results display and searching by gene | ||
| | | | ||
− | |||
− | |||
| | | | ||
|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
Line 476: | Line 534: | ||
|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#D7D7D7" | ||
| 59 | | 59 | ||
| [[WormBase Model:Molecule|Molecule]] | | [[WormBase Model:Molecule|Molecule]] | ||
Line 482: | Line 541: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; I don't think this class even exists. | ||
| | | | ||
| | | | ||
Line 491: | Line 551: | ||
| Norie | | Norie | ||
| ? | | ? | ||
+ | | | ||
| | | | ||
|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
Line 499: | Line 560: | ||
| | | | ||
|No API necessary; AceDB internals/accessed from XREFed classes. | |No API necessary; AceDB internals/accessed from XREFed classes. | ||
+ | | | ||
| | | | ||
|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
Line 507: | Line 569: | ||
| | | | ||
|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
+ | | | ||
| | | | ||
|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
Line 515: | Line 578: | ||
| | | | ||
|No API necessary; AceDB internals. | |No API necessary; AceDB internals. | ||
+ | | | ||
| | | | ||
|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
Line 522: | Line 586: | ||
| | | | ||
| | | | ||
− | |No API | + | |No API needed at this time; accessed from XREFed classes. |
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#FFF79A" | ||
| 65 | | 65 | ||
| [[WormBase Model:Neurodata|Neurodata]] | | [[WormBase Model:Neurodata|Neurodata]] | ||
Line 530: | Line 595: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time. Is this class deprecated? | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#FFF79A" |
| 66 | | 66 | ||
| [[WormBase Model:Neuro_location|Neuro_location]] | | [[WormBase Model:Neuro_location|Neuro_location]] | ||
Line 538: | Line 604: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time. Is this class deprecated? | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#F6989D" |
| 67 | | 67 | ||
| [[WormBase Model:Oligo|Oligo]] | | [[WormBase Model:Oligo|Oligo]] | ||
Line 546: | Line 613: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; accessed through XREFed classes like PCR_product. | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#F6989D" |
| 68 | | 68 | ||
| [[WormBase Model:Oligo_set|Oligo_set]] | | [[WormBase Model:Oligo_set|Oligo_set]] | ||
Line 554: | Line 622: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; accessed through XREFed classes. | ||
| | | | ||
| | | | ||
Line 559: | Line 628: | ||
| 69 | | 69 | ||
| [[WormBase Model:Operon|Operon]] | | [[WormBase Model:Operon|Operon]] | ||
− | | | + | | 90 % |
| | | | ||
− | | | + | | Norie |
+ | | Work with XS on data needed for image | ||
| | | | ||
| | | | ||
Line 572: | Line 642: | ||
| ? | | ? | ||
| http://beta.wormbase.org/reports/paper/WBPaper00015392 | | http://beta.wormbase.org/reports/paper/WBPaper00015392 | ||
+ | | | ||
|- | |- | ||
| 71 | | 71 | ||
Line 577: | Line 648: | ||
| | | | ||
| | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 587: | Line 659: | ||
| Norie | | Norie | ||
| ? | | ? | ||
+ | | | ||
| | | | ||
|-bgcolor="#F6989D" | |-bgcolor="#F6989D" | ||
Line 595: | Line 668: | ||
| | | | ||
|No API needed at this time; support class for searching the Person class. | |No API needed at this time; support class for searching the Person class. | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 604: | Line 678: | ||
| will schedule a call soon | | will schedule a call soon | ||
| http://beta.wormbase.org/reports/phenotype/WBPhenotype:0000039 | | http://beta.wormbase.org/reports/phenotype/WBPhenotype:0000039 | ||
− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 75 | | 75 | ||
| [[WormBase Model:Phenotype_Assay|Phenotype_Assay]] | | [[WormBase Model:Phenotype_Assay|Phenotype_Assay]] | ||
Line 610: | Line 685: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; support class of Phenotype; accessed through XREFed classes. | ||
| | | | ||
| | | | ||
Line 619: | Line 695: | ||
| | | | ||
|No API needed at this time; support class for searching Phenotype. | |No API needed at this time; support class for searching Phenotype. | ||
+ | | | ||
| | | | ||
|-bgcolor="#D7D7D7" | |-bgcolor="#D7D7D7" | ||
Line 627: | Line 704: | ||
| | | | ||
|No API needed; AceDB internals. | |No API needed; AceDB internals. | ||
+ | | | ||
| | | | ||
|- | |- | ||
Line 636: | Line 714: | ||
| | | | ||
| | | | ||
− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 79 | | 79 | ||
| [[WormBase Model:Pos_neg_data|Pos_neg_data]] | | [[WormBase Model:Pos_neg_data|Pos_neg_data]] | ||
Line 642: | Line 721: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; accessed through XREFed classes. | ||
| | | | ||
| | | | ||
Line 652: | Line 732: | ||
| Content/UI call done on 07/08/10, rather simple model should be finish soon. | | Content/UI call done on 07/08/10, rather simple model should be finish soon. | ||
| http://beta.wormbase.org/reports/protein/WP:CE28239 | | http://beta.wormbase.org/reports/protein/WP:CE28239 | ||
− | |- | + | | |
+ | |-bgcolor="#FFF79A" | ||
| 81 | | 81 | ||
| [[WormBase Model:Pseudogene|Pseudogene]] | | [[WormBase Model:Pseudogene|Pseudogene]] | ||
Line 658: | Line 739: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; support class of Gene; *possibly* needed for future enhancements. | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#FFF79A" |
| 82 | | 82 | ||
| [[WormBase Model:Rearrangement|Rearrangement]] | | [[WormBase Model:Rearrangement|Rearrangement]] | ||
Line 666: | Line 748: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; support class of Variation. *POSSIBLY* needed for future enhancements. | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#FFF79A" |
| 83 | | 83 | ||
| [[WormBase Model:ReconCellInfo|ReconCellInfo]] | | [[WormBase Model:ReconCellInfo|ReconCellInfo]] | ||
Line 674: | Line 757: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time. | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#FFF79A" |
| 84 | | 84 | ||
| [[WormBase Model:Reconstruction|Reconstruction]] | | [[WormBase Model:Reconstruction|Reconstruction]] | ||
Line 682: | Line 766: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time. Ask Raymond about this class. | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#F6989D" |
| 85 | | 85 | ||
| [[WormBase Model:Reference|Reference]] | | [[WormBase Model:Reference|Reference]] | ||
Line 690: | Line 775: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time; this seems to be a helper class of Paper anyways. | ||
| | | | ||
| | | | ||
Line 695: | Line 781: | ||
| 86 | | 86 | ||
| [[WormBase Model:RNAi|RNAi]] | | [[WormBase Model:RNAi|RNAi]] | ||
− | | | + | | 80% |
| | | | ||
− | | | + | | Norie |
+ | | Work with XS on references | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#F6989D" |
| 87 | | 87 | ||
| [[WormBase Model:SAGE_experiment|SAGE_experiment]] | | [[WormBase Model:SAGE_experiment|SAGE_experiment]] | ||
Line 706: | Line 793: | ||
| | | | ||
| | | | ||
+ | |No API needed at this time. Support class of Sage_tag. | ||
| | | | ||
| | | | ||
Line 713: | Line 801: | ||
| | | | ||
| | | | ||
+ | | | ||
| | | | ||
| | | | ||
Line 724: | Line 813: | ||
| Content/UI call on 07/10/10, lots of feedback | | Content/UI call on 07/10/10, lots of feedback | ||
| http://beta.wormbase.org/reports/sequence/JC8.10a | | http://beta.wormbase.org/reports/sequence/JC8.10a | ||
+ | | | ||
|- | |- | ||
| 90 | | 90 | ||
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− | |- | + | | |
+ | |-bgcolor="#D7D7D7" | ||
| 91 | | 91 | ||
| [[WormBase Model:SO_term|SO_term]] | | [[WormBase Model:SO_term|SO_term]] | ||
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+ | |No API necessary; AceDB internals. | ||
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− | |- | + | |-bgcolor="#F6989D" |
| 92 | | 92 | ||
| [[WormBase Model:Species|Species]] | | [[WormBase Model:Species|Species]] | ||
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+ | |No API needed at this time. We will link Taxonomy to a (likely hand-coded) page describing that species and available resources. | ||
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| Norie | | Norie | ||
| ? | | ? | ||
+ | | | ||
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|- | |- | ||
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| | | | ||
− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 95 | | 95 | ||
| [[WormBase Model:Timepoint|Timepoint]] | | [[WormBase Model:Timepoint|Timepoint]] | ||
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+ | |No API needed at this time. | ||
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− | |- | + | |-bgcolor="#F6989D" |
| 96 | | 96 | ||
| [[WormBase Model:Transcript|Transcript]] | | [[WormBase Model:Transcript|Transcript]] | ||
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+ | |No API needed at this time; support class of Gene and Sequence; accessed through XREFed classes. | ||
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| ? | | ? | ||
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− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 98 | | 98 | ||
| [[WormBase Model:Transposon|Transposon]] | | [[WormBase Model:Transposon|Transposon]] | ||
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+ | |No API needed at this time; support class of Transposon and Variation; accessed through XREFed classes. | ||
| | | | ||
| | | | ||
− | |- | + | |-bgcolor="#F6989D" |
| 99 | | 99 | ||
| [[WormBase Model:Transposon_family|Transposon_family]] | | [[WormBase Model:Transposon_family|Transposon_family]] | ||
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+ | |No API needed at this time; support class of Transposon & variation; accessed through XREFed classes. | ||
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| content/UI call finish on 06/25/10, will schedule another follow up call | | content/UI call finish on 06/25/10, will schedule another follow up call | ||
| http://beta.wormbase.org/reports/variation/WBVar00182432 | | http://beta.wormbase.org/reports/variation/WBVar00182432 | ||
− | |- | + | | |
+ | |-bgcolor="#F6989D" | ||
| 101 | | 101 | ||
| [[WormBase Model:Variation_name|Variation_name]] | | [[WormBase Model:Variation_name|Variation_name]] | ||
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+ | |No API needed at this time; support class for Variation. | ||
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|} | |} | ||
+ | |||
+ | |||
+ | [[Category:Developer documentation]] | ||
+ | [[Category:WormBase 2.0]] |
Latest revision as of 18:14, 15 June 2011
The A - Z of Ace Model and Redesign Page
This page serves as an index of available Ace classses; see the Google Doc for migration status.
No. | Name | API | Template | People | Comment/Brief Description | Link | Replaces |
---|---|---|---|---|---|---|---|
1 | 2_point_data | No API needed at this time; partner class of Gene and possibly Variation, Rearrangement, Locus | |||||
2 | 3d_data | No API needed. I think this class has been superceded by Structure_data. | |||||
3 | Accession_number | No API needed at this time; accessed through XREFed classes. | |||||
4 | Analysis | No API needed at this time; Should probably be incorporated into Evidence template display. | |||||
5 | Anatomy_function | ||||||
6 | Anatomy_name | No API needed at this time; support class for Anatomy_term. | |||||
7 | Anatomy_term | 80% | Norie | ||||
8 | Antibody | Almost done, work with XS on references | Norie | ||||
9 | AO_code | ||||||
10 | Atlas | No API needed at this time. | |||||
11 | Author | Person class takes precendence. | |||||
12 | Balancer | No API needed at this time | |||||
13 | CDS | No API needed at this time; support class of Gene and Sequence; accessed through XREFed classes. | |||||
14 | Cell | No API needed at this time. Class is deprecated and no longer maintained. | |||||
15 | Cell_group | No API needed at this time. Class is deprecated and no longer maintained. | |||||
16 | Clone | ||||||
17 | Condition | ||||||
18 | Contig | ||||||
19 | Database | No API needed at this time; accessed from XREFed classes. | |||||
20 | Database_field | No API needed at this time; accessed from XREFed classes. | |||||
21 | Expression_cluster | 5% | Abby | just getting search working | |||
22 | Expr_pattern | ||||||
23 | Expr_profile | 90% | Norie | Work with Template czar to get other necessary data for details | |||
24 | Feature | ||||||
25 | Feature_data | ||||||
26 | Gene | mostly done | in progress | Norie and Abby | will schedule a content/UI call soon | http://beta.wormbase.org/reports/gene/WBGene00006763 | |
27 | Gene_class | on going | Norie | ||||
28 | Gene_cluster | ||||||
29 | Gene_name | No API needed at this time; support class for Gene. | |||||
30 | Gene_regulation | ||||||
31 | Genetic_code | No API needed at this time. | |||||
32 | GO_code | ||||||
33 | GO_term | Mostly done | Norie | ||||
34 | Grid | No API necessary; AceDB internals. | |||||
35 | Grid_data | No API necessary; AceDB internals. | |||||
36 | Grid_row | No API necessary; AceDB internals. | |||||
37 | Homol_data | No API needed at this time; accessed from XREFed classes. | |||||
38 | Homology_group | ||||||
39 | Interaction | 80%? | ? | Norie | ? | ||
40 | Interval_col_conf | No API necessary; AceDB internals. | |||||
41 | Jade | No API necessary; AceDB internals. | |||||
42 | Lab_Location | No API needed at this time. | |||||
43 | Laboratory | 90% | Norie | ||||
44 | Library | ||||||
45 | Life_stage | ||||||
46 | Locus | ||||||
47 | ManyMap | No API necessary; AceDB internals. | |||||
48 | Map | No API necessary; AceDB internals. | |||||
49 | Map_error | No API necessary; AceDB internals. | |||||
50 | Map_offset | No API necessary; AceDB internals. | |||||
51 | Map_position | No API needed at this time; accessed through XREFed classes. | |||||
52 | Mass_spec_experiment | ||||||
53 | Mass_spec_peptide | ||||||
54 | Method | No API needed at this time. | |||||
55 | Microarray | No API needed at this time; support class of Microarray_results; display being shunted to SPELL at Caltech. | |||||
56 | Microarray_experiment | No API needed at this time; support class of Microarray_results; display being shunted to SPELL at Caltech. | |||||
57 | Microarray_results | 5% | Abby | Just enabled search results display and searching by gene | |||
58 | Mixed_grid_row | No API necessary; AceDB internals. | |||||
59 | Molecule | No API needed at this time; I don't think this class even exists. | |||||
60 | Motif | 80%? | ? | Norie | ? | ||
61 | Movie | No API necessary; AceDB internals/accessed from XREFed classes. | |||||
62 | Multi_counts | No API necessary; AceDB internals. | |||||
63 | MultiMap | No API necessary; AceDB internals. | |||||
64 | Multi_pt_data | No API needed at this time; accessed from XREFed classes. | |||||
65 | Neurodata | No API needed at this time. Is this class deprecated? | |||||
66 | Neuro_location | No API needed at this time. Is this class deprecated? | |||||
67 | Oligo | No API needed at this time; accessed through XREFed classes like PCR_product. | |||||
68 | Oligo_set | No API needed at this time; accessed through XREFed classes. | |||||
69 | Operon | 90 % | Norie | Work with XS on data needed for image | |||
70 | Paper | 50% | 50% | Xiaoqi | ? | http://beta.wormbase.org/reports/paper/WBPaper00015392 | |
71 | PCR_product | ||||||
72 | Person | 80%? | ? | Norie | ? | ||
73 | Person_name | No API needed at this time; support class for searching the Person class. | |||||
74 | Phenotype | 85% | 85% | Xiaoqi | will schedule a call soon | http://beta.wormbase.org/reports/phenotype/WBPhenotype:0000039 | |
75 | Phenotype_Assay | No API needed at this time; support class of Phenotype; accessed through XREFed classes. | |||||
76 | Phenotype_name | No API needed at this time; support class for searching Phenotype. | |||||
77 | Picture | No API needed; AceDB internals. | |||||
78 | Position_Matrix | ||||||
79 | Pos_neg_data | No API needed at this time; accessed through XREFed classes. | |||||
80 | Protein | 90% | 90% | Xiaoqi | Content/UI call done on 07/08/10, rather simple model should be finish soon. | http://beta.wormbase.org/reports/protein/WP:CE28239 | |
81 | Pseudogene | No API needed at this time; support class of Gene; *possibly* needed for future enhancements. | |||||
82 | Rearrangement | No API needed at this time; support class of Variation. *POSSIBLY* needed for future enhancements. | |||||
83 | ReconCellInfo | No API needed at this time. | |||||
84 | Reconstruction | No API needed at this time. Ask Raymond about this class. | |||||
85 | Reference | No API needed at this time; this seems to be a helper class of Paper anyways. | |||||
86 | RNAi | 80% | Norie | Work with XS on references | |||
87 | SAGE_experiment | No API needed at this time. Support class of Sage_tag. | |||||
88 | SAGE_tag | ||||||
89 | Sequence | 80% | 80% | Xiaoqi | Content/UI call on 07/10/10, lots of feedback | http://beta.wormbase.org/reports/sequence/JC8.10a | |
90 | SK_map | ||||||
91 | SO_term | No API necessary; AceDB internals. | |||||
92 | Species | No API needed at this time. We will link Taxonomy to a (likely hand-coded) page describing that species and available resources. | |||||
93 | Strain | 80%? | ? | Norie | ? | ||
94 | Structure_data | ||||||
95 | Timepoint | No API needed at this time. | |||||
96 | Transcript | No API needed at this time; support class of Gene and Sequence; accessed through XREFed classes. | |||||
97 | Transgene | 80%? | ? | Norie | ? | ||
98 | Transposon | No API needed at this time; support class of Transposon and Variation; accessed through XREFed classes. | |||||
99 | Transposon_family | No API needed at this time; support class of Transposon & variation; accessed through XREFed classes. | |||||
100 | Variation | 85% | 85% | Todd | content/UI call finish on 06/25/10, will schedule another follow up call | http://beta.wormbase.org/reports/variation/WBVar00182432 | |
101 | Variation_name | No API needed at this time; support class for Variation. | |||||
102 | YH |