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  • WormBase Model:Clone
    // ?Clone class ?Clone Evidence #Evidence
    10 KB (1,176 words) - 22:24, 18 March 2014

Page text matches

  • WormBase Model:Grid row
    ?Grid_row UNIQUE Clone UNIQUE ?Clone XREF Gridded REPEAT ?Mixed_grid_row UNIQUE Clone UNIQUE ?Clone XREF Gridded #Mixed_grid_row
    320 bytes (41 words) - 13:36, 4 October 2010
  • WormBase Model:Grid data
    Positive Hybridizes_to ?Clone Positive_product ?Clone
    679 bytes (66 words) - 13:28, 4 October 2010
  • WormBase Model:Mixed grid row
    ?Mixed_grid_row UNIQUE Clone UNIQUE ?Clone XREF Gridded #Mixed_grid_row
    196 bytes (24 words) - 14:45, 4 October 2010
  • WormBase Model:Contig
    Clone ?Clone XREF pMap
    265 bytes (31 words) - 09:35, 4 October 2010
  • WBConfCall 2012.05.17-Agenda and Minutes
    == 2. RNAi clone mapping efforts == What is the current status of clone mapping efforts for RNAi objects at Hinxton?
    1 KB (205 words) - 16:55, 17 May 2012
  • WBConfCall 2014.05.01-Agenda and Minutes
    2. Add a "Clone" tag to the ?RNAi model and a "Used_in_RNAi" tag to the ?Clone model (Chris) Clone
    868 bytes (139 words) - 15:56, 1 May 2014
  • Reporting sequence for RNAi
    '''Use of cDNA/EST/OST Clone names''' Reporting the cDNA/EST/OST clone names (e.g. AF071375, yk275g9, OSTR215B4_1)
    998 bytes (156 words) - 18:56, 16 August 2010
  • WBConfCall 2012.03.15-Agenda and Minutes
    === RNAi clone mapping === Hinxton is almost set up to take the RNAi clone mapping over from Caltech.
    1 KB (240 words) - 09:37, 16 March 2012
  • WormBase Model:Pos neg data
    Clone_1 UNIQUE ?Clone XREF Pos_neg_data Clone_2 UNIQUE ?Clone XREF Pos_neg_data
    1 KB (146 words) - 08:38, 5 October 2010
  • WormBase Model:Strain
    Clone ?Clone XREF In_strain
    1 KB (119 words) - 16:43, 11 April 2013
  • WormBase Model:Accession number
    Clone ?Clone // added [031120 krb]
    1 KB (141 words) - 10:05, 15 November 2011
  • User Guide:WBNavigation
    *[[UserGuide:Clone | Clone/Plasmid Page]]
    1 KB (146 words) - 06:23, 12 August 2010
  • WormBase Model:Clone
    // ?Clone class ?Clone Evidence #Evidence
    10 KB (1,176 words) - 22:24, 18 March 2014
  • WormBase Source Code
    $ hg clone http://bitbucket.org/tharris/wormbase/ $ hg clone https://username@bitbucket.org/tharris/wormbase
    4 KB (664 words) - 13:20, 2 June 2014
  • WormBase Model:PCR product
    Clone ?Clone XREF PCR_product // added [krb 031126]
    2 KB (176 words) - 16:09, 4 October 2010
  • WormBase Model:Map
    Clone ?Clone XREF Map
    2 KB (208 words) - 14:36, 4 October 2010
  • WormBase Model:Map position
    With_clone UNIQUE ?Clone #Map_offset
    611 bytes (58 words) - 14:40, 4 October 2010
  • WormBase Model:Rearrangement
    Clone_inside ?Clone XREF Inside_rearr ?Author Clone_outside ?Clone XREF Outside_rearr ?Author
    3 KB (265 words) - 08:51, 5 October 2010
  • Source and maintenance of non-WBGene info
    Information for gene, variation, clone, strain, rearrangement, and laboratory are provided in a nightly json dump -populates obo_name/data_<datatype> tables where <datatype> is variation, clone, strain, or rearrangement
    8 KB (1,375 words) - 05:12, 21 April 2020
  • AceDB classes tutorial
    ! A Clone ! Clone
    2 KB (281 words) - 21:51, 11 August 2010
  • Cosmids/YACs
    ...sts_new.png|link=https://www.sanger.ac.uk/tool/c-elegans-and-pombes-clones|Clone Requests]] There are seven different types of "Clone" objects in WormBase:
    12 KB (1,857 words) - 16:21, 5 January 2021
  • WormBase Model:Database field
    ?Clone
    700 bytes (98 words) - 09:44, 4 October 2010
  • WS226 Models.wrm
    * ?Clone
    1 KB (124 words) - 11:01, 19 April 2011
  • (4 papers)
    ...to sequences reported in the Wormbase, except that the yk720e2 crn-6 cDNA clone contains a base substitution (A322G, Ile108Val).
    1 KB (193 words) - 18:58, 10 August 2010
  • Reagents
    *[http://www.lifesciences.sourcebioscience.com/clone-products/mirna--rnai-resources.aspx RNAi libraries (Source BioScience)] &lt;a href="ftp://caltech.wormbase.org/pub/annots/rnai/"&gt;RNAi clone mapping&lt;/a&gt;,
    2 KB (271 words) - 15:10, 22 September 2021
  • AceDB classes
    * [[WormBase Model:Clone|Clone]]
    4 KB (568 words) - 11:06, 23 May 2011
  • WS107
    ...7.gz - Latest set of ORF connections to each Yuji Kohara EST clone ...terpolated_map_positions.WS107.gz - Interpolated map positions for each clone
    6 KB (659 words) - 11:17, 21 December 2011
  • New Paper Model - Model and Changes to Pipeline
    Clone ?Clone XREF Reference #Evidence Clone ?Clone XREF Reference #Evidence
    10 KB (928 words) - 18:34, 2 May 2011
  • WormBase Model:Transgene
    Clone ?Clone XREF Transgene Text Clone ?Clone XREF Transgene Text
    13 KB (1,341 words) - 20:12, 22 September 2015
  • WormBase Model:Paper
    Clone ?Clone XREF Reference #Evidence
    5 KB (471 words) - 16:07, 4 October 2010
  • WormBase Model:Expr pattern
    Clone ?Clone XREF Expr_pattern //this is to record plasmid names for the study, not used
    4 KB (497 words) - 22:42, 6 December 2010
  • WebDev 2013.05.20-Agenda and Minutes
    * will clone intermine server ** TH: dns, email, will clone instance, add disk space
    2 KB (293 words) - 15:57, 24 May 2013
  • WebDev 2009.07.29-Agenda and Minutes
    * TH: Clone for every release, so that we have a checklist for each release, at a glanc
    1 KB (203 words) - 10:43, 29 July 2009
  • UserGuide:Interval Search
    ...t more than 2 cM apart, using the names of two genetically mapped mutants, clone names, identified genes, or predicted genes (for example, evl-7 to sup-23).
    1 KB (198 words) - 18:29, 17 August 2010
  • In vitro flagging
    ...rved particularly with older papers that describe an 'activity' but do not clone the gene. These papers would be SVM positive for in vitro training, but ar
    1 KB (178 words) - 00:04, 2 February 2011
  • UserGuide:ePCR
    ...GenBank accession may not precisely correspond to the insert of a physical clone in that object. Click on the hyper link for details at NCBI. ...ect. Again, these may not precisely correspond to the insert of a physical clone.
    3 KB (523 words) - 18:34, 17 August 2010
  • Site Map
    *[http://www.wormbase.org/db/seq/clone?name=JC8 Clone Report]
    3 KB (374 words) - 18:22, 9 March 2020
  • WebDev 2010.03.31-Agenda and Minutes
    '''API for Sequence, Protein, Clone, Variation, Strain (overseen by Norie with help from all)'''
    2 KB (216 words) - 16:54, 31 March 2010
  • UserGuide:Advanced Search
    ...select from, and you can view the whole list of each class, not only Cell, Clone and Strain, but also those that cannot be selected in Basic Searches, such
    2 KB (273 words) - 18:24, 17 August 2010
  • Example Pages
    <td>Clone</td> <td>[http://dev.wormbase.org:8023/species/c_elegans/clone/pC31 pC31]</td>
    8 KB (1,190 words) - 23:28, 12 March 2012
  • WormBase Model:Locus
    Negative_clone ?Clone XREF Negative_locus ?Author
    2 KB (193 words) - 14:28, 4 October 2010
  • WBConfCall 2013.08.01-Agenda and Minutes
    ...hand over to Hinxton: stlace is now taken over by Hinxton. All C. elegans clone, sequence and genes are now merged into a single database.
    2 KB (232 words) - 09:58, 2 August 2013
  • UserGuide:Display Tools
    ...ression Pattern", while in other places it may be called "Cell Report" or "Clone Report".
    2 KB (266 words) - 18:26, 17 August 2010
  • WebDev 2010.04.28-Agenda and Minutes
    * Abby looking to clone Zheng's VM to wb-biomart.oicr.on.ca
    2 KB (233 words) - 13:23, 29 April 2010
  • Downloads
    == RNAi clone mapping ==
    8 KB (1,219 words) - 22:33, 24 October 2011
  • WebDev 2011.05.25-Agenda and Minutes
    clone - - - -
    2 KB (243 words) - 20:29, 25 May 2011
  • WormBase Model:Gene
    Positive_clone ?Clone XREF Positive_gene #Evidence Negative_clone ?Clone XREF Negative_gene #Evidence
    7 KB (712 words) - 10:40, 4 October 2010
  • Linking To WormBase
    ...c/epic?name=X;class=Clone</code>, where X is replaced with the name of the clone. For example: &lt;a href="http://www.wormbase.org/db/misc/epic?name=F59E12;class=Clone"&gt;F59E12&lt;/a&gt;&lt;br&gt;
    6 KB (1,087 words) - 15:07, 19 June 2014
  • Mark up policy
    '''cDNA clone.''' ''yk1106g06.3'' → Sequence Summary page: '''Now looking to clone class? (see below and e-mail of 1 July 2009 and 29 July)'''<br>
    14 KB (2,365 words) - 21:14, 23 July 2013
  • Expression pattern remodel
    *‪ Sequence: 8 objects I could consolidate with other classes -e.g. clone‬ Clone ?Clone XREF Expr_pattern
    16 KB (1,695 words) - 08:29, 12 May 2014
  • Website:Data Structure (old page)
    ::'''Clone'''=>
    4 KB (358 words) - 17:11, 4 May 2010
  • WormBase-Caltech Weekly Calls February 2015
    === Clone Mapper Software === * We will adopt Clone Mapper for RNAi clone mapping
    8 KB (1,120 words) - 16:19, 5 March 2015
  • WormBase Model:Sequence
    Clone_left_end ?Clone XREF Clone_left_end UNIQUE Int Clone_right_end ?Clone XREF Clone_right_end UNIQUE Int
    12 KB (1,258 words) - 09:29, 5 October 2010
  • WS180
    ...nterpolated_map_positions.WS180.gz - Interpolated map positions for each clone Total number of bases has increased due to a sequence update for clone CTEL3X.
    7 KB (771 words) - 10:52, 21 December 2011
  • Updating ontology (.obo) files for the OA
    ...g/index.php/Source_and_maintenance_of_non-WBGene_info here] for variation, clone, strain, rearrangement, and laboratory obo table, basically these files are ===Clone info===
    10 KB (1,644 words) - 18:48, 13 August 2020
  • WebDev 2010.04.07-Agenda and Minutes
    '''API for Sequence, Protein, Clone, Variation, Strain (overseen by Norie with help from all)'''
    2 KB (313 words) - 16:52, 7 April 2010
  • WebDev 2010.10.20-Agenda and Minutes
    * Rich support for five classes (Gene, Variation, Sequence, Protein, Clone)
    2 KB (251 words) - 20:35, 20 October 2010
  • UserGuide:How to Obtain Reagents
    *How do I get a YK cDNA clone?
    2 KB (382 words) - 10:45, 1 August 2013
  • WormBase-Caltech Weekly Calls March 2014
    ...discussing how to handle plasmids/vectors, whether they should go in the ?Clone class (there is precedence) ...g including all plasmids and vectors (e.g. AddGene & Fire vectors) to the ?Clone class which can then be referenced within the ?Construct class
    8 KB (1,218 words) - 17:46, 2 April 2014
  • BASIC PROTOCOL 3: EXAMINING A GENE IN C. ELEGANS
    ...m, 1998), and "number" denotes an otherwise anonymous gene embedded in the clone).
    5 KB (855 words) - 19:57, 11 August 2010
  • WBConfCall 2018.05.17-Agenda and Minutes
    ...onfusion to users, though, who may need to validate the sequence against a clone they order from Don Moerman's group? **Karen has found some strain and clone names that are the same.
    5 KB (816 words) - 16:43, 17 May 2018
  • WS131
    ...31.gz - Latest set of ORF connections to each Yuji Kohara EST clone ...nterpolated_map_positions.WS131.gz - Interpolated map positions for each clone
    6 KB (669 words) - 11:18, 21 December 2011
  • WormBase Model:RNAi
    // such as yk clone; not UNIQUE anymore
    3 KB (312 words) - 15:14, 15 July 2010
  • WS117
    ...7.gz - Latest set of ORF connections to each Yuji Kohara EST clone ...terpolated_map_positions.WS117.gz - Interpolated map positions for each clone
    6 KB (695 words) - 11:17, 21 December 2011
  • WS122
    ...- Latest set of ORF connections to each Yuji Kohara EST clone ..._interpolated_map_positions.WS122.gz - Interpolated map positions for each clone
    6 KB (721 words) - 11:18, 21 December 2011
  • Unused Attributes
    | :clone/does-not-hybridize-to | ?Clone
    35 KB (4,174 words) - 10:52, 2 February 2015
  • WS112
    ...2.gz - Latest set of ORF connections to each Yuji Kohara EST clone ...terpolated_map_positions.WS112.gz - Interpolated map positions for each clone
    6 KB (735 words) - 11:17, 21 December 2011
  • WormBase Newsletter No. 2, February 2003
    == Genomic Clone Requests ==
    7 KB (1,180 words) - 11:00, 21 December 2011
  • WS154
    ...nterpolated_map_positions.WS154.gz - Interpolated map positions for each clone 2) The clone C24G6 had incorrect wublastx data in the previous release of WormBase
    7 KB (749 words) - 11:08, 21 December 2011
  • WS237 Models.wrm
    *Clone
    3 KB (475 words) - 14:53, 19 February 2013
  • Fosmids
    ...com/products/life-science-research/clones/genomic-clones/c-elegans-genomic-clone-collections/c-elegans-fosmid-library/ link] for their distribution of Don M [http://elegans.bcgsc.bc.ca/perl/fosmid/CloneSearch/ Search for your clone]
    3 KB (496 words) - 10:12, 15 September 2017
  • WormBase-Caltech Weekly Calls October 2012
    *Gene pages could then display "THE" RNAi clone for a gene per library (e.g. Vidal or Ahringer), along with resource addres *If multiple clones per gene, indicate which clone is unique to that gene
    5 KB (843 words) - 17:26, 1 November 2012
  • WormBase Model:Construct
    Clone ?Clone XREF Construct Clone "pGEM-5
    20 KB (2,339 words) - 18:04, 23 September 2015
  • Entity classes and problems
    *Clone '''Clone''' -> ''acedb on spica''; Sequence Summary page<br>
    10 KB (1,696 words) - 17:21, 25 July 2013
  • WS127
    ...7.gz - Latest set of ORF connections to each Yuji Kohara EST clone ...terpolated_map_positions.WS127.gz - Interpolated map positions for each clone
    7 KB (872 words) - 11:18, 21 December 2011
  • WBConfCall 2016.07.07-Agenda and Minutes
    ...equence objects that can be mapped and then associate these objects with a clone and then a construct (the latter 2 having metadata and connectivity). To b
    3 KB (457 words) - 19:24, 7 July 2016
  • WS179
    ...nterpolated_map_positions.WS179.gz - Interpolated map positions for each clone | Clone | Type | Flank | Change | Flank |
    8 KB (843 words) - 10:53, 21 December 2011
  • WBConfCall 2012.02.02-Agenda and Minutes
    Clone ?Clone // added [031120 krb]
    8 KB (879 words) - 09:32, 3 February 2012
  • UserGuide:Sequence Page
    ...gsae ortholog (where one is known to exist). Other data such as the source clone, sequencing center responsible for the data, microarray data, remarks on th
    3 KB (490 words) - 18:31, 17 August 2010
  • WormBase-Caltech Weekly Calls April 2021
    === OpenBiosystems RNAi clone IDs === * User looking to map Open Biosystems RNAi clone names to WB clone names
    11 KB (1,782 words) - 17:55, 13 May 2021
  • AceOjbect Redesign Page
    | [[WormBase Model:Clone|Clone]]
    12 KB (1,559 words) - 18:14, 15 June 2011
  • WS185
    ...nterpolated_map_positions.WS185.gz - Interpolated map positions for each clone
    6 KB (680 words) - 07:37, 11 January 2008
  • Issues-9/24/2013
    * #1644 - Error messages Sequence/Clone page - AC
    3 KB (416 words) - 18:30, 24 September 2013
  • WS186
    ...nterpolated_map_positions.WS186.gz - Interpolated map positions for each clone
    6 KB (683 words) - 05:51, 3 April 2008
  • DictyBase
    #[[Clone CCC curation form for dictyBase - Juancarlos, Kimberly]]
    3 KB (439 words) - 21:25, 6 November 2012
  • Software Life Cycle: 4. Updating The Production Servers
    # clone the repository git clone git://github.com/mishoo/UglifyJS.git
    8 KB (1,229 words) - 16:17, 30 December 2013
  • WBConfCall 2022.03.17-Agenda and Minutes
    ...NAi mapping criteria, which genes are predicted to be knocked down by each clone
    3 KB (563 words) - 03:27, 19 March 2022
  • WormBase Newsletter No. 3, October 2003
    ...been a 2.4% increase in the overall size of the genome, mainly due to the clone and sequence gaps being closed with the final gap closure in October 2002 f
    10 KB (1,509 words) - 15:40, 24 September 2007
  • Contributing Phenotype Connections
    ...ies fields for optional data, pertaining to the nature of the allele, RNAi clone, or transgene with respect to the observed phenotypes indicated in the form ...ll location (e.g. "Source BioScience II-6H13") or the sequence of the RNAi clone (e.g. "ACGTATGCTAG...."). Because RNA interference experiments can now be c
    26 KB (4,016 words) - 21:32, 8 April 2020
  • WormBase-Caltech Weekly Calls October 2014
    * We want meta-data, especially sequence data (dsRNA, allele, clone, etc.) ...gent rules? e.g. sequence submission for clones and dsRNA sequences versus clone names or more ambiguous identifiers
    7 KB (1,079 words) - 19:04, 6 November 2014
  • Transgene curation pipeline
    * Remark "Clone = " ** "Clone = "
    9 KB (1,321 words) - 21:59, 3 May 2020
  • WS183
    ...nterpolated_map_positions.WS183.gz - Interpolated map positions for each clone
    7 KB (800 words) - 10:01, 8 November 2007
  • Website:WormMine
    > git clone git@github.com:WormBase/website-intermine-master.git wormmine > git clone git://github.com/WormBase/website-intermine-sources.git wormmine
    9 KB (1,231 words) - 14:55, 19 June 2014
  • Construct
    |cns_publicname||Public Name||/Clone: values from trp_constructionsummary |cns_clone|| Clone|| copy from trp_clone NOTE: might have been deemed empty and deleted alread
    10 KB (1,537 words) - 17:05, 28 May 2021
  • WS184
    ...nterpolated_map_positions.WS184.gz - Interpolated map positions for each clone
    7 KB (831 words) - 07:36, 11 January 2008
  • Unused evidence
    :clone/evidence EMPTY
    7 KB (604 words) - 18:21, 11 November 2014
  • WBConfCall 2014.07.03-Agenda and Minutes
    2) Clone Class additional ?Sequence connections to remove ambiguity - Paul === Clone ===
    15 KB (2,374 words) - 16:00, 17 July 2014
  • WS208
    ...nterpolated_map_positions.WS208.gz - Interpolated map positions for each clone
    5 KB (581 words) - 16:50, 21 December 2011
  • WS212
    ...nterpolated_map_positions.WS212.gz - Interpolated map positions for each clone
    5 KB (582 words) - 11:16, 21 December 2011
  • Gene Expression micropublications
    and -> sequence (free text), reporter (ontology on reporters), clone (ontology on clones) ...nstruct OA clone field: id: D1001 name: "D1001"remark: "C. elegans genomic clone not used in the final reference genome, submitted by The C. elegans Genome
    21 KB (3,194 words) - 02:08, 17 May 2018

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