Difference between revisions of "Caltech documentation"
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==Ontology Annotator== | ==Ontology Annotator== | ||
*[[Ontology Annotator]] | *[[Ontology Annotator]] | ||
| + | **[[Ontology_Annotator#Batch_upload_to_OA_from_tab-delimited_file | Batch upload data to OA]] | ||
==Textpresso== | ==Textpresso== | ||
Revision as of 23:48, 9 December 2013
Contents
- 1 First-pass flagging
- 2 Automation and Text Mining Approaches
- 3 Citace
- 4 Datatype
- 5 Paper Categorization
- 6 Biological Topic Curation
- 7 Curation Progress
- 8 postgres
- 9 Caltech weekly meetings
- 10 Conference Calls
- 11 Phenote
- 12 Ontology Annotator
- 13 Textpresso
- 14 SVMs for First Pass Curation
- 15 GSA markup
- 16 User Guide 2010
- 17 Interesting, Not-yet-modelled Data Index
- 18 Release note requests from Caltech
First-pass flagging
- First-pass flagging pipelines
- Instructions for the first pass curator:
- Datatypes flagged through the first-pass forms: Datatypes flagged
Automation and Text Mining Approaches
Citace
Datatype
- Antibody
- Concise Descriptions
- Expression Pattern
- Gene Class Descriptions
- Gene Interaction
- Gene Ontology
- Gene-Paper Associations
- Gene Regulation
- Life_Stage
- Molecule
- Movie
- Paper Pipeline
- Phenotypes
- Physical Interactions
- Pictures
- RNAi
- Sequence Feature
- Topic_pages
- Transgenes
- Disease and Drugs
- Drugs
Paper Categorization
Biological Topic Curation
Curation Progress
postgres
- WBGene information and status pipeline
- Source and maintenance of non-WBGene info
- OA forms, tables, scripts, etc
- Postgres queries
- Updating Postgres with New WS Information
Caltech weekly meetings
Conference Calls
Phenote
Ontology Annotator
Textpresso
SVMs for First Pass Curation
GSA markup
- GSA Markup Workflow
- GSA Markup SOP
- GSA linking pipeline
- Entity classes and problems
- Future Entities for markup
- GSA Markup Meeting Notes
- GO entity markup
