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- [[WormBase Models]] == Model ==1 KB (104 words) - 10:38, 10 August 2010
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- [[WormBase Models]] == Model ==1 KB (104 words) - 10:38, 10 August 2010
- [[WormBase Models]] Could poss use ?Analysis and remove this class?543 bytes (47 words) - 09:05, 5 October 2010
- * Can use text: "Compare with other model organisms at <AGR logo>" ...ne Set Enrichment Analysis" in (navigation) Tools menu [https://github.com/WormBase/website/issues/5565 #5565]2 KB (250 words) - 16:12, 19 October 2017
- [[WormBase Models]] ?Analysis700 bytes (98 words) - 09:44, 4 October 2010
- [[WormBase Models]] Updated model and unused tags for WS245 elegans data from pre-merged BUILD/elegans databa4 KB (394 words) - 08:39, 16 September 2014
- == Model Changes == RNASeq ?Analysis Int3 KB (306 words) - 10:00, 26 October 2011
- [[WormBase Models]] == Model ==2 KB (183 words) - 22:58, 6 December 2010
- == The A - Z of Ace Model and Redesign Page == ...ndex of available Ace classses; see the [https://spreadsheets.google.com/a/wormbase.org/ccc?key=tygSYCz49YW5hyCcYMHUZ1Q#gid=2 Google Doc] for migration status.12 KB (1,559 words) - 18:14, 15 June 2011
- 6 Oct 2010: The latest changes to the assembly are due to be added to WormBase in release WS221. ...this is done, we are happy to turn the ownership of the genome sequence to WormBase. - Paul Sternberg.3 KB (437 words) - 16:02, 15 December 2011
- New release of WormBase WS203, Wormpep203 and Wormrna203 Thu May 28 13:24:17 BST 2009 http://www.wormbase.org/wiki/index.php/Release_Schedule6 KB (662 words) - 16:50, 21 December 2011
- [[WormBase Models]] == Model ==3 KB (272 words) - 16:10, 4 October 2010
- [[WormBase Models]] == Model ==3 KB (318 words) - 00:53, 7 December 2010
- New release of WormBase WS181, Wormpep181 and Wormrna181 Fri Sep 7 11:40:20 BST 2007 http://www.wormbase.org/wiki/index.php/Release_notes8 KB (885 words) - 16:47, 21 December 2011
- [[WormBase Models]] == Model ==15 KB (1,645 words) - 18:54, 23 January 2014
- = The A - Z of WormBase Models = Document created from [http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?root=ensembl&view=markup&pathrev=WS218 WS218] models.16 KB (2,207 words) - 23:06, 9 January 2014
- [[WS241_Models.wrm | WS241 model details]] ...n - Microarray and Tiling_array now linking to ?Microarray_experiment and ?Analysis. Also added DB_INFO tag8 KB (1,246 words) - 15:52, 12 November 2013
- === Construct model/annotation === ...d to add "Construct" under list of "Detection methods" in the ?Interaction model4 KB (622 words) - 16:47, 6 August 2014
- This page contains information pertinent to employees of WormBase. ...VPuB__KmNs5tErO6VXDY/pub New Employee Orientation] -- ''Getting started at WormBase, for employees at any location. Read this first.''12 KB (1,638 words) - 18:25, 18 June 2014
- <pre>New release of WormBase WS199, Wormpep199 and Wormrna199 Tue Feb 3 12:09:54 GMT 2009 http://www.wormbase.org/wiki/index.php/Release_Schedule6 KB (661 words) - 16:51, 21 December 2011
- [[WormBase Models]] == Model ==12 KB (1,258 words) - 09:29, 5 October 2010
- [[WormBase Models]] == Model ==5 KB (471 words) - 16:07, 4 October 2010
- [[WormBase Models]] == Model ==8 KB (853 words) - 23:50, 16 April 2014
- * Should we provide an analysis of raw data to users to perform their own comparative analyses * David (Angeles) working on an expression data analysis pipeline9 KB (1,490 words) - 15:35, 6 October 2016
- Model in place, but data not yet migrated, but will be in place with WS221. [[Browser_Support_Statement|WormBase Browser Support statement]]1 KB (199 words) - 20:57, 3 November 2010
- WormBase staff can find this document in the "Documentation" directory and edit it t = About Groups at WormBase =5 KB (757 words) - 01:45, 2 June 2014
- = Proposed Model changes = Link to the model changes proposed for WS236 [[WS236_Models.wrm]]5 KB (752 words) - 18:55, 6 December 2012
- =WormBase Curated Data Types and Curation Methods= HMM - Hidden Markov Model9 KB (1,174 words) - 18:30, 29 August 2012
- Is there a link from WormBase to Alaska, and an announcement about its function? == WormBase resources for non-coding RNA ==3 KB (561 words) - 18:39, 6 February 2020
- ...ving model nematode ''Caenorhabditis elegans''. This makes it an important model of parasitic nematode biology that is commonly used for experimental studie The current assembly shown at WormBase is from August 2009 and provided by a collaboration of the Wellcome Trust S3 KB (493 words) - 16:03, 15 December 2011
- * Ontology term enrichment analysis, using ontologies other than gene ontology ** Would be good to have a single central tool/resource for enrichment analysis10 KB (1,464 words) - 17:09, 13 August 2015
- ...s are being dealt with or closed, except github ticket [https://github.com/WormBase/website/issues/8156| #8156] * https://github.com/WormBase/website/issues/8156 - - needs a reply from textpresso group -Valerio will t4 KB (709 words) - 13:27, 5 April 2021
- *We should be able to start configuring for WormBase at that point *Gary will propose appropriate model changes (e.g. Add "silencer" and "enhancer" to method for GBrowse display)7 KB (1,059 words) - 15:37, 1 August 2013
- ''This is a running list of proposed features at WormBase'' == New displays, analysis, and data integration ==6 KB (842 words) - 17:01, 21 October 2011
- == 1. Model changes (Hinxton) == 1a) Variation model sign off7 KB (1,182 words) - 13:50, 20 April 2012
- <pre>New release of WormBase WS117, Wormpep117 and Wormrna117 Tue Jan 20 10:22:06 GMT 2004 http://www.sanger.ac.uk/Projects/C_elegans/WORMBASE6 KB (695 words) - 11:17, 21 December 2011
- ** Should have a guide for users [http://www.wormbase.org/about/Frequently_asked_questions#f--10 Here] * User needs WormBase official response.3 KB (423 words) - 16:35, 7 September 2017
- * What implications does this have for the WormBase Ontology Browser? * A lot of GO protein interaction data to extract; might use ?Analysis objects to track attribution of curation8 KB (1,120 words) - 16:19, 5 March 2015
- ...gff3, transcripts from gff3 has been expanded to represent all species in wormbase (besides any of the "sp" species) ...a for each Ace type has been expanded. Wiki has been updated: http://wiki.wormbase.org/index.php/WormMine#Data_contained_in_WormMine2 KB (361 words) - 16:32, 17 October 2013
- * There shouldn't be model changes (that affect Caltech) for this next upload ...oogle.com/spreadsheets/d/1sS_uAjBJ2r5H90Lam62Ai0HunjwvfjnklkFNrDoNXeU/edit Analysis of current flags and numbers of entries]6 KB (921 words) - 16:52, 4 January 2018
- Curators checked their model proposals in this file: WS241 pre-WS241 tagged models [[http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?revision=1.396&root=ensembl&view=markup pre-WS241]]6 KB (909 words) - 21:56, 21 November 2013
- ...a of the model nematode ''Caenorhabditis elegans'' and related nematodes. WormBase is developed by an international consortium of researchers and computer sci *[[UserGuide:General_Description|Overview of WormBase]]4 KB (613 words) - 09:23, 30 June 2011
- ** For list of files, see: ftp://ftp.sanger.ac.uk/pub/consortia/wormbase/STAFF/mh6/nightly_geneace/ === WormBase Ontology Browser WS248 online on Dev ===8 KB (1,147 words) - 15:33, 7 May 2015
- "Proteomic and Bioinformatic Analysis of the Root-Knot Nematode Meloidogyne hapla: The Basis for Plant Parasitism ...his database, termed HapPep3, available from the Superfamily repository of model organism proteomes ([http://supfam.mrc-lmb.cam.ac.uk/SUPERFAMILY http://sup3 KB (462 words) - 16:11, 15 December 2011
- ...just know what are problematic URLs; should all be handled by main URL www.wormbase.org === Disease model annotation class display ===11 KB (1,703 words) - 15:27, 5 April 2018
- * ?Construct model === ?Construct model ===8 KB (1,218 words) - 17:46, 2 April 2014
- * Curators will likely need to work with a models "master" to make model changes * http://juancarlos.wormbase.org , look at a gene page, open Phenotype Graph widget5 KB (776 words) - 16:50, 7 January 2016
- New release of WormBase WS160, Wormpep160 and Wormrna160 Thu Jun 15 16:29:46 BST 2006 http://wwwdev.sanger.ac.uk/Projects/C_elegans/WORMBASE6 KB (706 words) - 10:50, 21 December 2011
- New release of WormBase WS214, Wormpep214 and Wormrna214 Tue Apr 27 15:37:39 BST 2010 http://www.wormbase.org/wiki/index.php/Release_Schedule6 KB (709 words) - 16:49, 21 December 2011
- * WormBook mirror: will move from wormbase.sanger.ac.uk to * WormBase mirror: will go offline next week Friday7 KB (1,220 words) - 15:50, 25 November 2011
- ...nique and powerful in worm, including single cell transcriptomics/sequence analysis, neural circuits, metabolomics, proteomics, ncRNA orthologs. ...inding site (for example, a schematic of promoter etc. on the current gene model).11 KB (1,649 words) - 16:10, 19 July 2018
- New release of WormBase WS208, Wormpep208 and Wormrna208 Tue Oct 27 13:31:22 GMT 2009 http://www.wormbase.org/wiki/index.php/Release_Schedule5 KB (581 words) - 16:50, 21 December 2011
- New release of WormBase WS226 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:21 KB (2,346 words) - 11:15, 21 December 2011
- *Should we take minutes of Caltech WormBase group meetings and send around? *WormBase-wide conference call twice per month8 KB (1,282 words) - 17:08, 7 July 2011
- * WormBase uses EnsemblCompara and other methods (not aggregate method like DIOPT) * Orthology synchrony is a challenge; WormBase and FlyBase may need to pay special attention to orthology calls and discre12 KB (1,809 words) - 16:33, 1 March 2018
- * I could not find an ontology that was ready built to adopt; few genetic model organisms, of those, FB has the most useful. Other mods use controlled voca ...in genotypes, to support genotype-to-phenotype (G2P) data aggregation and analysis across diverse research communities and sources)for a cross-species genetic6 KB (982 words) - 15:33, 2 July 2015
- * Further discussed capturing/registering when a curator has reviewed a gene model but not made a change ** New db puts #model annotation of the edges of the graph, so does not currently support this.5 KB (741 words) - 10:57, 21 August 2015
- * Eppendorf tube openers with WormBase logo? *[http://wiki.wormbase.org/index.php/First-pass_flagging_pipelines#Author_first-pass_form_revision12 KB (1,930 words) - 17:12, 1 February 2018
- ...r><br>Release notes on the web:<br>-------------------------<br>http://www.wormbase.org/wiki/index.php/Release_Schedule<br><br>Genome sequence composition:<br> ...open your database, e.g.<br> type 'xace /users/yourname/wormbase' at the command prompt.<br><br>5. See the acedb website for more informatio11 KB (1,614 words) - 16:52, 21 December 2011
- Main outline [https://docs.google.com/a/wormbase.org/document/d/1l6pExlCMI88pi_-djk8jt7IzNsMDV-nIEY9Z1gBNh-A/edit here]- not [https://docs.google.com/a/wormbase.org/document/d/1mAxrqVIhxDNpkTUBmtu12sAo58pEG763tgASlzy-3JU/ here]10 KB (1,453 words) - 18:52, 4 February 2015
- *Prepopulation: Display all (key?) experimental info on gene from WormBase, some Textpresso info like "ABC-1 encodes..." ***Model changes7 KB (1,047 words) - 15:34, 4 April 2013
- ***Integrated interaction model, genetic interaction ontology ***Need to update Gene expression model to accommodate Epic dataset (John Murray), 3D movies (Bill Mohler), and sin12 KB (1,878 words) - 15:55, 6 September 2012
- New release of WormBase WS223, Wormpep223 and Wormrna223 Mon Jan 24 12:12:08 GMT 2011 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data15 KB (1,610 words) - 11:20, 21 December 2011
- New release of WormBase WS221, Wormpep221 and Wormrna221 Tue Nov 23 12:32:16 GMT 2010 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data17 KB (1,758 words) - 16:47, 21 December 2011
- New release of WormBase WS228 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:14 KB (1,572 words) - 10:37, 11 November 2011
- New release of WormBase WS227 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:15 KB (1,738 words) - 11:20, 21 December 2011
- *We can make a special note for each gene page, but the people using batch analysis could not catch that easily. * Will work on GO-CAMs and build a relevant model(s)9 KB (1,369 words) - 22:47, 5 August 2020
- <pre>New release of WormBase WS122, Wormpep122 and Wormrna122 March 26th 2004 http://www.sanger.ac.uk/Projects/C_elegans/WORMBASE6 KB (721 words) - 11:18, 21 December 2011
- **Groups will switch to using common data model that works for all and common ontology/ontologies in the near future. ** Expression pattern curation needs genetic sex; needs a model at the Alliance for capturing sex5 KB (880 words) - 15:40, 3 September 2020
- * Testing at juancarlos.wormbase.org (from there go to Tools > Ontology Browser) ** Add a Reactome display to WormBase?10 KB (1,474 words) - 15:54, 30 April 2014
- *How to use annotation extensions for LEGO model? *WormBase workshop8 KB (1,161 words) - 16:34, 7 March 2013
- New release of WormBase WS225, Wormpep225 and Wormrna225 Tue Apr 5 11:57:03 BST 2011 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data16 KB (1,674 words) - 11:38, 20 April 2011
- New release of WormBase WS288 WS288 was built by Stavros Diamantakis with the input from the WormBase Community and Team. Thank you!16 KB (1,733 words) - 21:55, 11 May 2023
- New release of WormBase WS234 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:15 KB (1,653 words) - 10:13, 18 January 2013
- === Past meetings posted on the WormBase Meeting page === === 2020 - 2021 WormBase Webinars ===12 KB (1,663 words) - 16:28, 9 October 2023
- Title: WormBase 2019 - Data, Tools and Community Curation ...sitic worm genomic data, and guide participants on how to find data across model organisms at the Alliance of Genome Research.9 KB (1,364 words) - 15:39, 7 February 2019
- New release of WormBase WS231 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:16 KB (1,820 words) - 14:15, 13 September 2012
- ===WormBase Webinars=== === Proposal: Tie WormBase releases to the Alliance release schedule ===5 KB (890 words) - 18:36, 5 November 2020
- ** Some species (e.g. P. pac) have few/no gene model changes, but could do with being brought up to latest models and have newes ** MP to create summary of gene model changes for each species11 KB (1,714 words) - 11:04, 27 July 2015
- ...ZCX1hZ3b-vDdWB4KjIvieALc_GLnYqYCTqnMaJ7Rg/edit (Need to be logged in with WormBase google account to edit it). === WormBase Workshop roll call ===9 KB (1,431 words) - 23:32, 23 June 2015
- New release of WormBase WS284 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES)17 KB (1,841 words) - 21:54, 11 May 2023
- * Need to change "Tissue Enrichment Analysis" link title under WormBase Tools menu * There's a question about how we now handle model changes going forward7 KB (1,010 words) - 17:08, 4 May 2017
- http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?revision=1.404&root=ensembl&view=markup ...ata that only has person communication as evidence. How should users cite WormBase ? How should we make it clear to users that some is published and some isn15 KB (2,374 words) - 16:00, 17 July 2014
- ...LA group that wanted to look at nuclei data. It uses the tissue enrichment analysis code for the bottom 3 plots. ...hold for a few months to commit time to updating the phenotype annotation model to accommodate, e.g. double mutant phenotypes, multiple RNAi targets (inten5 KB (873 words) - 14:41, 4 February 2021
- New release of WormBase WS202, Wormpep202 and Wormrna202 Tue Apr 28 16:02:08 BST 2009 http://www.wormbase.org/wiki/index.php/Release_Schedule6 KB (770 words) - 11:06, 21 December 2011
- New release of WormBase WS220, Wormpep220 and Wormrna220 Mon Oct 25 13:22:36 BST 2010 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data16 KB (1,762 words) - 11:10, 21 December 2011
- New release of WormBase WS235 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:15 KB (1,708 words) - 10:14, 18 January 2013
- * Maybe have clade-specific descriptions based on the popular model (worms based on C. elegans); may be provided in MOD portal page(s) ...ki, EMBL-EBI, A whistle-stop tour of all the types of data you can find in WormBase5 KB (670 words) - 15:31, 3 June 2021
- [[WormBase-Caltech_Weekly_Calls_January_2022|January]] [[WormBase-Caltech_Weekly_Calls_February_2022|February]]10 KB (1,547 words) - 21:31, 2 January 2024
- === WormBase Ontology Browser (WOBr) === === ?Expr_pattern and ?Movie model changes ===13 KB (1,983 words) - 16:40, 7 November 2013
- ===WormBase Uploads=== ...produced weekly to the WormBase .ace file for upload: [[UniProtKB gpad to WormBase .ace]]30 KB (3,904 words) - 18:45, 13 May 2020
- New release of WormBase WS232 WS232 was built by Michael Paulini [michael.paulini@wormbase.org]15 KB (1,729 words) - 14:15, 13 September 2012
- Transgene Model *Kimberly working on Physical Interaction model7 KB (1,103 words) - 18:28, 5 May 2011
- == WormBase User's Survey == ...ll have a chance to win a WormBase mug with Thomas BoulinÕs award-winning WormBase Logo.7 KB (1,180 words) - 11:00, 21 December 2011
- New release of WormBase WS230 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:17 KB (1,950 words) - 09:37, 7 February 2012
- New release of WormBase WS233 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:17 KB (2,002 words) - 14:17, 13 September 2012
- New release of WormBase WS222, Wormpep222 and Wormrna222 Mon Dec 20 12:07:08 GMT 2010 WS222 was built by Michael Paulini (michael.paulini@wormbase.org)15 KB (1,647 words) - 10:06, 22 December 2010
- ...ators/users. we'll have to rely on juancarlos.wormbase.org as cost/benefit analysis is unfavourable to consider other options. * Awaiting model approval to move ahead6 KB (906 words) - 21:38, 30 September 2015
- * Wen needs a couple days from model tagging to prepare the final upload ** WormBase generated expression clusters (custom algorithm?)6 KB (857 words) - 16:01, 2 October 2014
- * Topics commonly studied in C. elegans due to its advantages as a model system *The ''C. elegans'' pharynx: a model for organogenesis10 KB (1,279 words) - 18:20, 18 October 2013
- New release of WormBase WS218, Wormpep218 and Wormrna218 Tue Aug 24 genomes DIR - contains a sub dir for each WormBase species with15 KB (1,756 words) - 11:21, 21 December 2011
- New release of WormBase WS224, Wormpep224 and Wormrna224 Fri Mar 4 14:58:13 GMT 2011 genomes DIR - contains a sub dir for each WormBase species with sequence, gff, and agp data15 KB (1,583 words) - 11:13, 21 December 2011
- * Changes requested here: https://github.com/WormBase/website/issues/7900 * Here's the FTP URL: ftp://ftp.wormbase.org/pub/wormbase/releases/WS280/ONTOLOGY/11 KB (1,782 words) - 17:55, 13 May 2021
- New release of WormBase WS229 species/ DIR - contains a sub dir for each WormBase species (G_SPECIES) with the following files:17 KB (1,988 words) - 11:15, 21 December 2011
- Karen Yook/wormbase- Caltech/@wbperson712 resources we used for innate immunity analysis and used by many researchers studying other things29 KB (4,082 words) - 19:15, 11 April 2014
- <pre>New release of WormBase WS215, Wormpep215 and Wormrna215 Thu May 27 18:15:29 BST 2010 http://www.wormbase.org/wiki/index.php/Release_Schedule19 KB (1,735 words) - 11:07, 21 December 2011
- == RNAi Data Model == This is the ?RNAi data model as of WormBase Release WS251:29 KB (4,152 words) - 20:29, 30 July 2019
- WormBase is updated with each new build of the database released from Sanger. The li ...g or troubleshooting. This is especially true during cycles where the data model changes significantly.34 KB (5,450 words) - 18:24, 17 August 2010
- * Issue for WBPaper00048704: https://wormbase.org/resources/paper/WBPaper00048704#0--10 * First author is "Li, C" as in PubMed (correct name) in WormBase as "Chun, L"8 KB (1,189 words) - 14:10, 5 July 2018
- Karen Yook/WormBase-Caltech/@wbperson712 financial reporting: business model before (subjective) - now quants (big data trends)37 KB (5,533 words) - 19:17, 11 April 2014
- Karen Yook/WormBase-Caltech/@wbperson712 financial reporting: business model before (subjective) - now quants (big data trends)37 KB (5,533 words) - 19:17, 11 April 2014
- ...y </nowiki>''C. elegans'' gene in the published literature can be found in WormBase, by reference either to genes or to cell or tissue types. There are results ...elopers group actively invites suggestions for improvement from users, and WormBase's source code is freely available for local installation and improvement.30 KB (4,765 words) - 20:03, 11 August 2010
- ** See github ticket 2867 https://github.com/WormBase/website/issues/2867#issuecomment-48041365 *** How many new objects did you add to WormBase23 KB (3,248 words) - 12:58, 22 September 2014
- [[http://www.wormbase.org/wiki/index.php?title=How_to_FirstPass&action=submit back]] | 4381||Sequence correction K08A8.1 St. Louis, see fig.2; Wormbase shows eight exons, paper shows five. ||48:45.740 KB (4,083 words) - 23:02, 13 August 2010
- **Documenting elements of WormBase workflow to ease transition for new staff and keep track of changes made **Added information and links for getting started with WormBase29 KB (4,254 words) - 20:25, 27 April 2012
- .../p><h2>Genomes, assemblies, clones and contigs</h2><p>Reference genomes in WormBase are given version names, for example <i>C. elegans</i> has the version name ...<b>AscSuum_1.0</b> and <b>ASU_2.0</b></p><p>The genomes of most species in WormBase are incompletely assembled, being left as various sizes of contig. Only <i>56 KB (9,520 words) - 11:51, 21 October 2015
- .../p><h2>Genomes, assemblies, clones and contigs</h2><p>Reference genomes in WormBase are given version names, for example <i>C. elegans</i> has the version name ...<b>AscSuum_1.0</b> and <b>ASU_2.0</b></p><p>The genomes of most species in WormBase are incompletely assembled, being left as various sizes of contig. Only <i>56 KB (9,514 words) - 09:48, 23 October 2015
- ...of similar or diverse nature which are used for high-throughput screening analysis of the gene function, protein interaction, cellular processing, biochemical ==Model==50 KB (6,966 words) - 19:15, 13 August 2020
- * Trained a small GPT model with C. elegans literature. Reporting some results. ** Current data model at the ABC has negated as a Boolean (true/false).36 KB (4,994 words) - 17:27, 14 February 2024
- ...ble mostly contains legacy information that was imported from the CGC when WormBase starting curating paper data, as PubMed currently does not curate all autho ...ation on editors of paper objects, mostly books. The current ACeDB ?Paper model dumps Editors as ?Text, but there is not a separate ?Editor class like ther25 KB (3,238 words) - 16:42, 8 November 2019
- == Model changes for WS244 == * This cycle we see 5 model changes in 4 classes:235 KB (23,325 words) - 10:33, 3 July 2014
- Current model (WS280) RNASeq ?Analysis104 KB (15,303 words) - 19:39, 11 May 2023
- ...ww.wormbase.org/about/Frequently_asked_questions FAQ pages] on the new www.wormbase.org site. === How should I cite WormBase? ===67 KB (10,954 words) - 09:22, 19 February 2013
- ==Picture Data Model== ...ta from the literature and individual laboratories and display them in the WormBase gene expression page.120 KB (19,719 words) - 16:44, 20 October 2023
- ...l traits such as gene expression patterns and neuronal connectivity. Also, WormBase contains sequence and gene structures of C. briggsae and C. remanei, two cl ...n of WormBase available in September, 2005 (WS147 release; BioPerl/Generic Model Organism Database software).103 KB (16,375 words) - 23:39, 30 November 2010
- ...ercontent.com/WormBase/wormbase-pipeline/master/wspec/models.wrm variation model]<br> *phenotype_ontology ftp://ftp.wormbase.org/pub/wormbase/releases/WS251/ONTOLOGY/phenotype_ontology.WS251.obo (correct for latest r36 KB (5,076 words) - 01:38, 2 March 2016
- http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/wormbase/wspec/models.wrm?root=ensembl&view=log ...ng the format Exprnnnn where n is a number; these values correspond to the WormBase ID of the Expr_pattern object; individual entries are comma-separated.47 KB (6,852 words) - 04:27, 8 December 2020
- ...u don't use it, is it in the emails you send out or in the submit forms in WormBase ? -- J answer Please keep form, must be the one linking to old papers asso http://www.wormbase.org/db/misc/person?name=WBPerson1823;class=Person119 KB (18,888 words) - 00:05, 2 May 2014